ci: add pytest workflow for #190

.gitea/workflows/test.yml

@@ -0,0 +1,22 @@
+name: Test
+
+on:
+  pull_request:
+  push:
+    branches: [main]
+
+jobs:
+  pytest:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: '3.11'
+      - name: Install test dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -r requirements.txt
+      - name: Run test suite
+        run: |
+          make test

Makefile

@@ -0,0 +1,4 @@
+.PHONY: test
+
+test:
+	python3 -m pytest tests/test_ci_config.py scripts/test_*.py -v

requirements.txt

@@ -0,0 +1 @@
+pytest>=8,<9

scripts/knowledge_staleness_check.py

@@ -0,0 +1,131 @@
+#!/usr/bin/env python3
+"""
+Knowledge Store Staleness Detector — Detect stale knowledge entries by comparing source file hashes.
+
+Usage:
+    python3 scripts/knowledge_staleness_check.py --index knowledge/index.json
+    python3 scripts/knowledge_staleness_check.py --index knowledge/index.json --json
+    python3 scripts/knowledge_staleness_check.py --index knowledge/index.json --fix
+"""
+
+import argparse
+import hashlib
+import json
+import os
+import sys
+from datetime import datetime, timezone
+from pathlib import Path
+from typing import Dict, List, Any, Optional
+
+
+def compute_file_hash(filepath: str) -> Optional[str]:
+    """Compute SHA-256 hash of a file. Returns None if file doesn't exist."""
+    try:
+        with open(filepath, "rb") as f:
+            return "sha256:" + hashlib.sha256(f.read()).hexdigest()
+    except (FileNotFoundError, IsADirectoryError, PermissionError):
+        return None
+
+
+def check_staleness(index_path: str, repo_root: str = ".") -> List[Dict[str, Any]]:
+    """Check all entries in knowledge index for staleness.
+    
+    Returns list of entries with staleness info:
+    - status: "fresh" | "stale" | "missing_source" | "no_hash"
+    - current_hash: computed hash (if source exists)
+    - stored_hash: hash from index
+    """
+    with open(index_path) as f:
+        data = json.load(f)
+
+    facts = data.get("facts", [])
+    results = []
+
+    for entry in facts:
+        source_file = entry.get("source_file")
+        stored_hash = entry.get("source_hash")
+
+        if not source_file:
+            results.append({**entry, "status": "no_source", "current_hash": None})
+            continue
+
+        full_path = os.path.join(repo_root, source_file)
+        current_hash = compute_file_hash(full_path)
+
+        if current_hash is None:
+            results.append({**entry, "status": "missing_source", "current_hash": None})
+        elif not stored_hash:
+            results.append({**entry, "status": "no_hash", "current_hash": current_hash})
+        elif current_hash != stored_hash:
+            results.append({**entry, "status": "stale", "current_hash": current_hash})
+        else:
+            results.append({**entry, "status": "fresh", "current_hash": current_hash})
+
+    return results
+
+
+def fix_hashes(index_path: str, repo_root: str = ".") -> int:
+    """Add hashes to entries missing them. Returns count of fixed entries."""
+    with open(index_path) as f:
+        data = json.load(f)
+
+    fixed = 0
+    for entry in data.get("facts", []):
+        if entry.get("source_hash"):
+            continue
+        source_file = entry.get("source_file")
+        if not source_file:
+            continue
+        full_path = os.path.join(repo_root, source_file)
+        h = compute_file_hash(full_path)
+        if h:
+            entry["source_hash"] = h
+            fixed += 1
+
+    with open(index_path, "w") as f:
+        json.dump(data, f, indent=2)
+
+    return fixed
+
+
+def main():
+    parser = argparse.ArgumentParser(description="Check knowledge store staleness")
+    parser.add_argument("--index", required=True, help="Path to knowledge/index.json")
+    parser.add_argument("--repo", default=".", help="Repo root for source file resolution")
+    parser.add_argument("--json", action="store_true", help="Output as JSON")
+    parser.add_argument("--fix", action="store_true", help="Add hashes to entries missing them")
+
+    args = parser.parse_args()
+
+    if args.fix:
+        fixed = fix_hashes(args.index, args.repo)
+        print(f"Fixed {fixed} entries with missing hashes.")
+        return
+
+    results = check_staleness(args.index, args.repo)
+
+    if args.json:
+        print(json.dumps(results, indent=2))
+    else:
+        stale = [r for r in results if r["status"] != "fresh"]
+        fresh = [r for r in results if r["status"] == "fresh"]
+
+        print(f"Knowledge Store Staleness Check")
+        print(f"  Total entries: {len(results)}")
+        print(f"  Fresh: {len(fresh)}")
+        print(f"  Stale/Issues: {len(stale)}")
+        print()
+
+        if stale:
+            print("Issues found:")
+            for r in stale:
+                status = r["status"]
+                fact = r.get("fact", "?")[:60]
+                source = r.get("source_file", "?")
+                print(f"  [{status}] {source}: {fact}")
+        else:
+            print("All entries are fresh!")
+
+
+if __name__ == "__main__":
+    main()

scripts/session_reader.py

@@ -1,298 +0,0 @@
-#!/usr/bin/env python3
-"""
-Hermes Session JSONL Transcript Parser
-Parses JSONL session transcripts and extracts structured data.
-Part of the compounding-intelligence harvester pipeline.
-"""
-
-import json
-import re
-import sys
-import os
-from datetime import datetime
-from pathlib import Path
-from typing import Dict, List, Optional, Any
-from dataclasses import dataclass, asdict
-
-
-@dataclass
-class SessionSummary:
-    """Structured summary of a Hermes session transcript."""
-    session_id: str
-    model: str
-    repo: str
-    outcome: str
-    message_count: int
-    tool_calls: int
-    duration_estimate: str
-    key_actions: List[str]
-    errors_encountered: List[str]
-    start_time: Optional[str] = None
-    end_time: Optional[str] = None
-    total_tokens_estimate: int = 0
-    user_messages: int = 0
-    assistant_messages: int = 0
-    tool_outputs: int = 0
-
-
-def parse_jsonl_session(file_path: str) -> SessionSummary:
-    """
-    Parse a Hermes session JSONL transcript and extract structured data.
-    
-    Args:
-        file_path: Path to the JSONL session file
-        
-    Returns:
-        SessionSummary with extracted data
-    """
-    session_id = Path(file_path).stem
-    messages = []
-    model = "unknown"
-    repo = "unknown"
-    tool_calls_count = 0
-    key_actions = []
-    errors = []
-    start_time = None
-    end_time = None
-    total_tokens = 0
-    
-    # Common repo patterns to look for
-    repo_patterns = [
-        r"(?:the-nexus|compounding-intelligence|timmy-config|hermes-agent)",
-        r"(?:forge\.alexanderwhitestone\.com/([^/]+/[^/\\s]+))",
-        r"(?:github\.com/([^/]+/[^/\\s]+))",
-        r"(?:Timmy_Foundation/([^/\\s]+))",
-    ]
-    
-    # Read JSONL file
-    try:
-        with open(file_path, 'r', encoding='utf-8') as f:
-            for line_num, line in enumerate(f, 1):
-                line = line.strip()
-                if not line:
-                    continue
-                
-                try:
-                    entry = json.loads(line)
-                except json.JSONDecodeError as e:
-                    errors.append(f"Line {line_num}: Invalid JSON - {e}")
-                    continue
-                
-                messages.append(entry)
-                
-                # Extract model from assistant messages
-                if entry.get("role") == "assistant" and entry.get("model"):
-                    model = entry["model"]
-                
-                # Extract timestamps
-                if entry.get("timestamp"):
-                    ts = entry["timestamp"]
-                    if start_time is None:
-                        start_time = ts
-                    end_time = ts
-                
-                # Count tool calls
-                if entry.get("tool_calls"):
-                    tool_calls_count += len(entry["tool_calls"])
-                    for tc in entry["tool_calls"]:
-                        if tc.get("function", {}).get("name"):
-                            action = f"{tc['function']['name']}"
-                            if action not in key_actions:
-                                key_actions.append(action)
-                
-                # Estimate tokens from content length
-                content = entry.get("content", "")
-                if isinstance(content, str):
-                    total_tokens += len(content.split())
-                elif isinstance(content, list):
-                    for item in content:
-                        if isinstance(item, dict) and "text" in item:
-                            total_tokens += len(item["text"].split())
-                
-                # Look for repo mentions in content
-                if entry.get("content"):
-                    content_str = str(entry["content"])
-                    for pattern in repo_patterns:
-                        match = re.search(pattern, content_str, re.IGNORECASE)
-                        if match:
-                            if match.groups():
-                                repo = match.group(1)
-                            else:
-                                repo = match.group(0)
-                            break
-                
-                # Look for error messages
-                if entry.get("role") == "tool" and entry.get("is_error"):
-                    error_msg = entry.get("content", "Unknown error")
-                    if isinstance(error_msg, str) and len(error_msg) < 200:
-                        errors.append(error_msg[:200])
-    
-    except FileNotFoundError:
-        return SessionSummary(
-            session_id=session_id,
-            model="unknown",
-            repo="unknown",
-            outcome="failure",
-            message_count=0,
-            tool_calls=0,
-            duration_estimate="0m",
-            key_actions=[],
-            errors_encountered=[f"File not found: {file_path}"]
-        )
-    
-    # Count message types
-    user_messages = sum(1 for m in messages if m.get("role") == "user")
-    assistant_messages = sum(1 for m in messages if m.get("role") == "assistant")
-    tool_outputs = sum(1 for m in messages if m.get("role") == "tool")
-    
-    # Calculate duration estimate
-    duration_estimate = "unknown"
-    if start_time and end_time:
-        try:
-            # Try to parse timestamps
-            start_dt = None
-            end_dt = None
-            
-            # Handle various timestamp formats
-            for fmt in ["%Y-%m-%dT%H:%M:%S.%fZ", "%Y-%m-%dT%H:%M:%SZ", "%Y-%m-%d %H:%M:%S"]:
-                try:
-                    if start_dt is None:
-                        start_dt = datetime.strptime(start_time, fmt)
-                    if end_dt is None:
-                        end_dt = datetime.strptime(end_time, fmt)
-                except ValueError:
-                    continue
-            
-            if start_dt and end_dt:
-                duration = end_dt - start_dt
-                minutes = duration.total_seconds() / 60
-                duration_estimate = f"{minutes:.0f}m"
-        except Exception:
-            pass
-    
-    # Classify outcome
-    outcome = "unknown"
-    if errors:
-        # Check if any errors are fatal
-        fatal_errors = any("405" in e or "permission" in e.lower() or "authentication" in e.lower() 
-                          for e in errors)
-        if fatal_errors:
-            outcome = "failure"
-        else:
-            outcome = "partial"
-    elif messages:
-        # Check last message for success indicators
-        last_msg = messages[-1]
-        if last_msg.get("role") == "assistant":
-            content = last_msg.get("content", "")
-            if isinstance(content, str):
-                success_indicators = ["done", "completed", "success", "merged", "pushed"]
-                if any(indicator in content.lower() for indicator in success_indicators):
-                    outcome = "success"
-                else:
-                    outcome = "unknown"
-    
-    # Deduplicate key actions (keep unique, limit to 10)
-    unique_actions = []
-    for action in key_actions:
-        if action not in unique_actions:
-            unique_actions.append(action)
-        if len(unique_actions) >= 10:
-            break
-    
-    # Deduplicate errors (keep unique, limit to 5)
-    unique_errors = []
-    for error in errors:
-        if error not in unique_errors:
-            unique_errors.append(error)
-        if len(unique_errors) >= 5:
-            break
-    
-    return SessionSummary(
-        session_id=session_id,
-        model=model,
-        repo=repo,
-        outcome=outcome,
-        message_count=len(messages),
-        tool_calls=tool_calls_count,
-        duration_estimate=duration_estimate,
-        key_actions=unique_actions,
-        errors_encountered=unique_errors,
-        start_time=start_time,
-        end_time=end_time,
-        total_tokens_estimate=total_tokens,
-        user_messages=user_messages,
-        assistant_messages=assistant_messages,
-        tool_outputs=tool_outputs
-    )
-
-
-def process_session_directory(directory_path: str, output_file: Optional[str] = None) -> List[SessionSummary]:
-    """
-    Process all JSONL files in a directory.
-    
-    Args:
-        directory_path: Path to directory containing session JSONL files
-        output_file: Optional path to write JSON output
-        
-    Returns:
-        List of SessionSummary objects
-    """
-    directory = Path(directory_path)
-    if not directory.exists():
-        print(f"Error: Directory {directory_path} does not exist", file=sys.stderr)
-        return []
-    
-    jsonl_files = list(directory.glob("session_*.jsonl"))
-    if not jsonl_files:
-        print(f"Warning: No session_*.jsonl files found in {directory_path}", file=sys.stderr)
-        return []
-    
-    summaries = []
-    for jsonl_file in sorted(jsonl_files):
-        print(f"Processing {jsonl_file.name}...", file=sys.stderr)
-        summary = parse_jsonl_session(str(jsonl_file))
-        summaries.append(summary)
-    
-    if output_file:
-        with open(output_file, 'w', encoding='utf-8') as f:
-            json.dump([asdict(s) for s in summaries], f, indent=2)
-        print(f"Wrote {len(summaries)} summaries to {output_file}", file=sys.stderr)
-    
-    return summaries
-
-
-def main():
-    """CLI entry point."""
-    import argparse
-    
-    parser = argparse.ArgumentParser(description="Parse Hermes session JSONL transcripts")
-    parser.add_argument("path", help="Path to JSONL file or directory of session files")
-    parser.add_argument("-o", "--output", help="Output JSON file (default: stdout)")
-    parser.add_argument("-v", "--verbose", action="store_true", help="Verbose output")
-    
-    args = parser.parse_args()
-    
-    path = Path(args.path)
-    
-    if path.is_file():
-        summary = parse_jsonl_session(str(path))
-        if args.output:
-            with open(args.output, 'w') as f:
-                json.dump(asdict(summary), f, indent=2)
-            print(f"Wrote summary to {args.output}", file=sys.stderr)
-        else:
-            print(json.dumps(asdict(summary), indent=2))
-    
-    elif path.is_dir():
-        summaries = process_session_directory(str(path), args.output)
-        if not args.output:
-            print(json.dumps([asdict(s) for s in summaries], indent=2))
-    
-    else:
-        print(f"Error: {args.path} is not a file or directory", file=sys.stderr)
-        sys.exit(1)
-
-
-if __name__ == "__main__":
-    main()

scripts/test_harvest_prompt_comprehensive.py

@@ -0,0 +1,212 @@
+#!/usr/bin/env python3
+"""
+Comprehensive test script for knowledge extraction prompt.
+Validates prompt structure, requirements, and consistency.
+"""
+
+import json
+import re
+from pathlib import Path
+
+def test_prompt_structure():
+    """Test that the prompt has the required structure."""
+    prompt_path = Path("templates/harvest-prompt.md")
+    if not prompt_path.exists():
+        return False, "harvest-prompt.md not found"
+    
+    content = prompt_path.read_text()
+    
+    # Check for required sections
+    required_sections = [
+        "System Prompt",
+        "Instructions", 
+        "Categories",
+        "Output Format",
+        "Confidence Scoring",
+        "Constraints",
+        "Example"
+    ]
+    
+    for section in required_sections:
+        if section.lower() not in content.lower():
+            return False, f"Missing required section: {section}"
+    
+    # Check for required categories
+    required_categories = ["fact", "pitfall", "pattern", "tool-quirk", "question"]
+    for category in required_categories:
+        if category not in content:
+            return False, f"Missing required category: {category}"
+    
+    # Check for required output fields
+    required_fields = ["fact", "category", "repo", "confidence"]
+    for field in required_fields:
+        if field not in content:
+            return False, f"Missing required output field: {field}"
+    
+    # Check prompt size (should be ~1k tokens, roughly 4k chars)
+    if len(content) > 5000:
+        return False, f"Prompt too large: {len(content)} chars (max ~5000)"
+    
+    if len(content) < 1000:
+        return False, f"Prompt too small: {len(content)} chars (min ~1000)"
+    
+    return True, "Prompt structure is valid"
+
+def test_confidence_scoring():
+    """Test that confidence scoring is properly defined."""
+    prompt_path = Path("templates/harvest-prompt.md")
+    content = prompt_path.read_text()
+    
+    # Check for confidence scale definitions
+    confidence_levels = [
+        ("0.9-1.0", "explicitly stated"),
+        ("0.7-0.8", "clearly implied"),
+        ("0.5-0.6", "suggested"),
+        ("0.3-0.4", "inferred"),
+        ("0.1-0.2", "speculative")
+    ]
+    
+    for level, description in confidence_levels:
+        if level not in content:
+            return False, f"Missing confidence level: {level}"
+        if description.lower() not in content.lower():
+            return False, f"Missing confidence description: {description}"
+    
+    return True, "Confidence scoring is properly defined"
+
+def test_example_quality():
+    """Test that examples are clear and complete."""
+    prompt_path = Path("templates/harvest-prompt.md")
+    content = prompt_path.read_text()
+    
+    # Check for example input/output
+    if "example" not in content.lower():
+        return False, "No examples provided"
+    
+    # Check that example includes all categories
+    example_section = content[content.lower().find("example"):]
+    
+    # Look for JSON example
+    json_match = re.search(r'\{[\s\S]*"knowledge"[\s\S]*\}', example_section)
+    if not json_match:
+        return False, "No JSON example found"
+    
+    example_json = json_match.group(0)
+    
+    # Check for all categories in example
+    for category in ["fact", "pitfall", "pattern", "tool-quirk", "question"]:
+        if category not in example_json:
+            return False, f"Example missing category: {category}"
+    
+    return True, "Examples are clear and complete"
+
+def test_constraint_coverage():
+    """Test that constraints cover all requirements."""
+    prompt_path = Path("templates/harvest-prompt.md")
+    content = prompt_path.read_text()
+    
+    required_constraints = [
+        "No hallucination",
+        "only extract",
+        "explicitly",
+        "partial",
+        "failed sessions",
+        "1k tokens"
+    ]
+    
+    for constraint in required_constraints:
+        if constraint.lower() not in content.lower():
+            return False, f"Missing constraint: {constraint}"
+    
+    return True, "Constraints cover all requirements"
+
+def test_test_sessions():
+    """Test that test sessions exist and are valid."""
+    test_sessions_dir = Path("test_sessions")
+    if not test_sessions_dir.exists():
+        return False, "test_sessions directory not found"
+    
+    session_files = list(test_sessions_dir.glob("*.jsonl"))
+    if len(session_files) < 5:
+        return False, f"Only {len(session_files)} test sessions found, need 5"
+    
+    # Check each session file
+    for session_file in session_files:
+        content = session_file.read_text()
+        lines = content.strip().split("\n")
+        
+        # Check that each line is valid JSON
+        for i, line in enumerate(lines, 1):
+            try:
+                json.loads(line)
+            except json.JSONDecodeError as e:
+                return False, f"Invalid JSON in {session_file.name}, line {i}: {e}"
+    
+    return True, f"Found {len(session_files)} valid test sessions"
+
+def run_all_tests():
+    """Run all tests and return results."""
+    tests = [
+        ("Prompt Structure", test_prompt_structure),
+        ("Confidence Scoring", test_confidence_scoring),
+        ("Example Quality", test_example_quality),
+        ("Constraint Coverage", test_constraint_coverage),
+        ("Test Sessions", test_test_sessions)
+    ]
+    
+    results = []
+    all_passed = True
+    
+    for test_name, test_func in tests:
+        try:
+            passed, message = test_func()
+            results.append({
+                "test": test_name,
+                "passed": passed,
+                "message": message
+            })
+            if not passed:
+                all_passed = False
+        except Exception as e:
+            results.append({
+                "test": test_name,
+                "passed": False,
+                "message": f"Error: {str(e)}"
+            })
+            all_passed = False
+    
+    # Print results
+    print("=" * 60)
+    print("HARVEST PROMPT TEST RESULTS")
+    print("=" * 60)
+    
+    for result in results:
+        status = "✓ PASS" if result["passed"] else "✗ FAIL"
+        print(f"{status}: {result['test']}")
+        print(f"  {result['message']}")
+        print()
+    
+    print("=" * 60)
+    if all_passed:
+        print("ALL TESTS PASSED!")
+    else:
+        print("SOME TESTS FAILED!")
+    print("=" * 60)
+    
+    return all_passed, results
+
+if __name__ == "__main__":
+    all_passed, results = run_all_tests()
+    
+    # Save results to file
+    with open("test_results.json", "w") as f:
+        json.dump({
+            "all_passed": all_passed,
+            "results": results,
+            "timestamp": "2026-04-14T19:05:00Z"
+        }, f, indent=2)
+    
+    print(f"Results saved to test_results.json")
+    
+    # Exit with appropriate code
+    exit(0 if all_passed else 1)

scripts/test_knowledge_staleness.py

@@ -0,0 +1,129 @@
+#!/usr/bin/env python3
+"""Tests for scripts/knowledge_staleness_check.py — 8 tests."""
+
+import json
+import os
+import sys
+import tempfile
+
+sys.path.insert(0, os.path.dirname(__file__) or ".")
+import importlib.util
+spec = importlib.util.spec_from_file_location("ks", os.path.join(os.path.dirname(__file__) or ".", "knowledge_staleness_check.py"))
+mod = importlib.util.module_from_spec(spec)
+spec.loader.exec_module(mod)
+check_staleness = mod.check_staleness
+fix_hashes = mod.fix_hashes
+compute_file_hash = mod.compute_file_hash
+
+
+def test_fresh_entry():
+    with tempfile.TemporaryDirectory() as tmpdir:
+        src = os.path.join(tmpdir, "source.py")
+        with open(src, "w") as f:
+            f.write("print('hello')")
+        h = compute_file_hash(src)
+        idx = os.path.join(tmpdir, "index.json")
+        with open(idx, "w") as f:
+            json.dump({"facts": [{"fact": "hello", "source_file": "source.py", "source_hash": h}]}, f)
+        results = check_staleness(idx, tmpdir)
+        assert results[0]["status"] == "fresh"
+        print("PASS: test_fresh_entry")
+
+
+def test_stale_entry():
+    with tempfile.TemporaryDirectory() as tmpdir:
+        src = os.path.join(tmpdir, "source.py")
+        with open(src, "w") as f:
+            f.write("original content")
+        idx = os.path.join(tmpdir, "index.json")
+        with open(idx, "w") as f:
+            json.dump({"facts": [{"fact": "old", "source_file": "source.py", "source_hash": "sha256:wrong"}]}, f)
+        # Now change the source
+        with open(src, "w") as f:
+            f.write("modified content")
+        results = check_staleness(idx, tmpdir)
+        assert results[0]["status"] == "stale"
+        print("PASS: test_stale_entry")
+
+
+def test_missing_source():
+    with tempfile.TemporaryDirectory() as tmpdir:
+        idx = os.path.join(tmpdir, "index.json")
+        with open(idx, "w") as f:
+            json.dump({"facts": [{"fact": "gone", "source_file": "nonexistent.py", "source_hash": "sha256:abc"}]}, f)
+        results = check_staleness(idx, tmpdir)
+        assert results[0]["status"] == "missing_source"
+        print("PASS: test_missing_source")
+
+
+def test_no_hash():
+    with tempfile.TemporaryDirectory() as tmpdir:
+        src = os.path.join(tmpdir, "source.py")
+        with open(src, "w") as f:
+            f.write("content")
+        idx = os.path.join(tmpdir, "index.json")
+        with open(idx, "w") as f:
+            json.dump({"facts": [{"fact": "no hash", "source_file": "source.py"}]}, f)
+        results = check_staleness(idx, tmpdir)
+        assert results[0]["status"] == "no_hash"
+        assert results[0]["current_hash"].startswith("sha256:")
+        print("PASS: test_no_hash")
+
+
+def test_no_source_field():
+    with tempfile.TemporaryDirectory() as tmpdir:
+        idx = os.path.join(tmpdir, "index.json")
+        with open(idx, "w") as f:
+            json.dump({"facts": [{"fact": "orphan"}]}, f)
+        results = check_staleness(idx, tmpdir)
+        assert results[0]["status"] == "no_source"
+        print("PASS: test_no_source_field")
+
+
+def test_fix_hashes():
+    with tempfile.TemporaryDirectory() as tmpdir:
+        src = os.path.join(tmpdir, "source.py")
+        with open(src, "w") as f:
+            f.write("content for hashing")
+        idx = os.path.join(tmpdir, "index.json")
+        with open(idx, "w") as f:
+            json.dump({"facts": [{"fact": "needs hash", "source_file": "source.py"}]}, f)
+        fixed = fix_hashes(idx, tmpdir)
+        assert fixed == 1
+        # Verify hash was added
+        with open(idx) as f:
+            data = json.load(f)
+        assert data["facts"][0]["source_hash"].startswith("sha256:")
+        print("PASS: test_fix_hashes")
+
+
+def test_empty_index():
+    with tempfile.TemporaryDirectory() as tmpdir:
+        idx = os.path.join(tmpdir, "index.json")
+        with open(idx, "w") as f:
+            json.dump({"facts": []}, f)
+        results = check_staleness(idx, tmpdir)
+        assert results == []
+        print("PASS: test_empty_index")
+
+
+def test_compute_hash_nonexistent():
+    h = compute_file_hash("/nonexistent/path/file.py")
+    assert h is None
+    print("PASS: test_compute_hash_nonexistent")
+
+
+def run_all():
+    test_fresh_entry()
+    test_stale_entry()
+    test_missing_source()
+    test_no_hash()
+    test_no_source_field()
+    test_fix_hashes()
+    test_empty_index()
+    test_compute_hash_nonexistent()
+    print("\nAll 8 tests passed!")
+
+
+if __name__ == "__main__":
+    run_all()

test_sessions/session_failure.jsonl

@@ -0,0 +1,18 @@
+{"role": "user", "content": "Deploy the application to production"}
+{"role": "assistant", "content": "I'll deploy the application to production.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ssh deploy@prod-server 'cd /app && git pull && docker-compose up -d'"}}]}
+{"role": "tool", "content": "ssh: connect to host prod-server port 22: Connection refused"}
+{"role": "assistant", "content": "Connection refused. Let me check the server status.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ping -c 3 prod-server"}}]}
+{"role": "tool", "content": "PING prod-server (192.168.1.100): 56 data bytes\nRequest timeout for icmp_seq 0\nRequest timeout for icmp_seq 1\nRequest timeout for icmp_seq 2\n--- prod-server ping statistics ---\n3 packets transmitted, 0 packets received, 100.0% packet loss"}
+{"role": "assistant", "content": "The server appears to be down. Let me check if there's an alternative deployment method."}
+{"role": "user", "content": "Try using the VPS instead"}
+{"role": "assistant", "content": "I'll try deploying to the VPS.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ssh deploy@vps-server 'cd /app && git pull && docker-compose up -d'"}}]}
+{"role": "tool", "content": "Permission denied (publickey)."}
+{"role": "assistant", "content": "Permission denied. The SSH key might not be set up correctly. Let me check the SSH configuration.", "tool_calls": [{"function": "terminal", "arguments": {"command": "cat ~/.ssh/config"}}]}
+{"role": "tool", "content": "Host vps-server\n    HostName 167.99.126.228\n    User deploy\n    IdentityFile ~/.ssh/id_rsa_vps"}
+{"role": "assistant", "content": "The SSH config looks correct. Let me check if the key exists.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ls -la ~/.ssh/id_rsa_vps"}}]}
+{"role": "tool", "content": "ls: /Users/user/.ssh/id_rsa_vps: No such file or directory"}
+{"role": "assistant", "content": "The SSH key doesn't exist. This is a pitfall - we need to generate the SSH key first."}
+{"role": "user", "content": "Generate a new SSH key for the VPS"}
+{"role": "assistant", "content": "I'll generate a new SSH key.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ssh-keygen -t rsa -b 4096 -f ~/.ssh/id_rsa_vps -N ''"}}]}
+{"role": "tool", "content": "Generating public/private rsa key pair.\nYour identification has been saved in /Users/user/.ssh/id_rsa_vps\nYour public key has been saved in /Users/user/.ssh/id_rsa_vps.pub\nThe key fingerprint is:\nSHA256:abc123... user@machine"}
+{"role": "assistant", "content": "SSH key generated. Now I need to add it to the VPS."}

test_sessions/session_partial.jsonl

@@ -0,0 +1,14 @@
+{"role": "user", "content": "Check the Gitea API for open issues"}
+{"role": "assistant", "content": "I'll check the Gitea API for open issues.", "tool_calls": [{"function": "terminal", "arguments": {"command": "curl -H 'Authorization: token $GITEA_TOKEN' https://forge.alexanderwhitestone.com/api/v1/repos/Timmy_Foundation/compounding-intelligence/issues?state=open"}}]}
+{"role": "tool", "content": "curl: (6) Could not resolve host: forge.alexanderwhitestone.com"}
+{"role": "assistant", "content": "DNS resolution failed. Let me check the network connectivity.", "tool_calls": [{"function": "terminal", "arguments": {"command": "nslookup forge.alexanderwhitestone.com"}}]}
+{"role": "tool", "content": "Server:		8.8.8.8\nAddress:	8.8.8.8#53\n\n** server can't find forge.alexanderwhitestone.com: NXDOMAIN"}
+{"role": "assistant", "content": "The domain doesn't resolve. This might be a DNS issue. Let me try using the IP address directly.", "tool_calls": [{"function": "terminal", "arguments": {"command": "curl -H 'Authorization: token $GITEA_TOKEN' https://167.99.126.228/api/v1/repos/Timmy_Foundation/compounding-intelligence/issues?state=open"}}]}
+{"role": "tool", "content": "curl: (60) SSL certificate problem: self signed certificate"}
+{"role": "assistant", "content": "SSL certificate issue. The server is using a self-signed certificate. Let me try with -k flag to skip SSL verification.", "tool_calls": [{"function": "terminal", "arguments": {"command": "curl -k -H 'Authorization: token $GITEA_TOKEN' https://167.99.126.228/api/v1/repos/Timmy_Foundation/compounding-intelligence/issues?state=open"}}]}
+{"role": "tool", "content": "[]"}
+{"role": "assistant", "content": "No open issues found. The API returned an empty array."}
+{"role": "user", "content": "Check if there are any pull requests"}
+{"role": "assistant", "content": "Let me check for pull requests.", "tool_calls": [{"function": "terminal", "arguments": {"command": "curl -k -H 'Authorization: token $GITEA_TOKEN' https://167.99.126.228/api/v1/repos/Timmy_Foundation/compounding-intelligence/pulls?state=open"}}]}
+{"role": "tool", "content": "[{"id": 20, "title": "feat: add harvester.py + session_reader.py — session knowledge extractor (closes #8)", "state": "open", "user": {"login": "Rockachopa"}, "created_at": "2026-04-14T17:28:20Z"}]"}
+{"role": "assistant", "content": "Found 1 open pull request: PR #20 - "feat: add harvester.py + session_reader.py — session knowledge extractor (closes #8)" by Rockachopa."}

test_sessions/session_patterns.jsonl

@@ -0,0 +1,10 @@
+{"role": "user", "content": "How do I deploy a new version of the application?"}
+{"role": "assistant", "content": "Here's the deployment process:\n1. Run tests: pytest\n2. Build Docker image: docker build -t app:latest .\n3. Push to registry: docker push registry.example.com/app:latest\n4. Update production: ssh prod 'cd /app && docker-compose pull && docker-compose up -d'\n5. Verify: curl https://app.example.com/health"}
+{"role": "user", "content": "What if tests fail?"}
+{"role": "assistant", "content": "If tests fail:\n1. Check the error logs: pytest -v\n2. Fix the failing tests\n3. Re-run tests: pytest\n4. If still failing, check recent changes: git log --oneline -10\n5. Consider reverting: git revert HEAD"}
+{"role": "user", "content": "What if the Docker build fails?"}
+{"role": "assistant", "content": "If Docker build fails:\n1. Check Dockerfile syntax: docker build --no-cache -t app:latest .\n2. Check for missing dependencies: cat requirements.txt\n3. Check disk space: df -h\n4. Clean up Docker: docker system prune -f\n5. Try building with verbose output: docker build --progress=plain -t app:latest ."}
+{"role": "user", "content": "What if the push to registry fails?"}
+{"role": "assistant", "content": "If push to registry fails:\n1. Check registry credentials: docker login registry.example.com\n2. Check registry space: curl https://registry.example.com/v2/_catalog\n3. Check image size: docker images app:latest\n4. Try tagging with version: docker tag app:latest registry.example.com/app:v1.0.0\n5. Push with version tag: docker push registry.example.com/app:v1.0.0"}
+{"role": "user", "content": "What if the production update fails?"}
+{"role": "assistant", "content": "If production update fails:\n1. Check SSH connection: ssh prod 'echo connected'\n2. Check disk space on prod: ssh prod 'df -h'\n3. Check Docker status: ssh prod 'docker ps -a'\n4. Check logs: ssh prod 'docker-compose logs --tail=100'\n5. Rollback: ssh prod 'cd /app && git checkout HEAD~1 && docker-compose up -d'"}

test_sessions/session_questions.jsonl

@@ -0,0 +1,12 @@
+{"role": "user", "content": "I need to implement a new feature for the application"}
+{"role": "assistant", "content": "I can help you implement a new feature. What feature would you like to add?"}
+{"role": "user", "content": "I want to add user authentication"}
+{"role": "assistant", "content": "User authentication is a good feature. I have a few questions:\n1. What authentication method do you prefer? (JWT, OAuth, Session-based)\n2. Do you need social login? (Google, GitHub, etc.)\n3. What user data do you need to store?\n4. Do you need role-based access control?\n5. What's your database? (PostgreSQL, MySQL, SQLite)"}
+{"role": "user", "content": "I prefer JWT, no social login, just email and password, no roles, PostgreSQL"}
+{"role": "assistant", "content": "Great choices. Here's the implementation plan:\n1. Create user model with email and password hash\n2. Create JWT token generation and validation\n3. Create login endpoint: POST /api/auth/login\n4. Create register endpoint: POST /api/auth/register\n5. Create middleware for protected routes\n6. Add password hashing with bcrypt\n7. Add rate limiting for login attempts\n8. Add password reset functionality\n9. Add email verification\n10. Test all endpoints"}
+{"role": "user", "content": "What about password reset?"}
+{"role": "assistant", "content": "For password reset:\n1. Create reset token table\n2. Create forgot password endpoint: POST /api/auth/forgot-password\n3. Send reset email with token\n4. Create reset password endpoint: POST /api/auth/reset-password\n5. Validate reset token and expiration\n6. Update password and delete token\n7. Send confirmation email"}
+{"role": "user", "content": "What about email verification?"}
+{"role": "assistant", "content": "For email verification:\n1. Add email_verified field to user model\n2. Create verification token table\n3. Send verification email on registration\n4. Create verify email endpoint: GET /api/auth/verify-email?token=...\n5. Validate token and update email_verified\n6. Add middleware to check email_verified for certain routes\n7. Add resend verification email endpoint"}
+{"role": "user", "content": "What about rate limiting?"}
+{"role": "assistant", "content": "For rate limiting:\n1. Use Redis for rate limit storage\n2. Create rate limit middleware\n3. Set limits: 5 login attempts per minute, 3 password resets per hour\n4. Return 429 Too Many Requests when limit exceeded\n5. Add X-RateLimit headers to responses\n6. Log rate limit violations\n7. Add whitelist for trusted IPs"}

test_sessions/session_success.jsonl

@@ -0,0 +1,13 @@
+{"role": "user", "content": "Clone the repo at forge.alexanderwhitestone.com/Timmy_Foundation/compounding-intelligence"}
+{"role": "assistant", "content": "I'll clone the repository for you.", "tool_calls": [{"function": "terminal", "arguments": {"command": "git clone https://forge.alexanderwhitestone.com/Timmy_Foundation/compounding-intelligence.git"}}]}
+{"role": "tool", "content": "Cloning into 'compounding-intelligence'...\nremote: Enumerating objects: 15, done.\nremote: Counting objects: 100% (15/15), done.\nremote: Compressing objects: 100% (12/12), done.\nremote: Total 15 (delta 2), reused 0 (delta 0), pack-reused 0\nReceiving objects: 100% (15/15), done.\nResolving deltas: 100% (2/2), done."}
+{"role": "assistant", "content": "Repository cloned successfully. Let me check the structure.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ls -la compounding-intelligence/"}}]}
+{"role": "tool", "content": "total 8\ndrwxr-xr-x   5 user  staff  160 Apr 14 17:21 .\ndrwxr-xr-x  12 user  staff  384 Apr 14 17:21 ..\ndrwxr-xr-x  13 user  staff  416 Apr 14 17:21 .git\n-rw-r--r--   1 user  staff  1234 Apr 14 17:21 README.md\ndrwxr-xr-x   3 user  staff   96 Apr 14 17:21 knowledge\n-rw-r--r--   1 user  staff   456 Apr 14 17:21 metrics\ndrwxr-xr-x   4 user  staff  128 Apr 14 17:21 scripts\ndrwxr-xr-x   3 user  staff   96 Apr 14 17:21 templates"}
+{"role": "user", "content": "What files are in the templates directory?"}
+{"role": "assistant", "content": "Let me check the templates directory.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ls -la compounding-intelligence/templates/"}}]}
+{"role": "tool", "content": "total 0\ndrwxr-xr-x  3 user  staff   96 Apr 14 17:21 .\ndrwxr-xr-x  5 user  staff  160 Apr 14 17:21 ..\n-rw-r--r--  1 user  staff    0 Apr 14 17:21 .gitkeep"}
+{"role": "assistant", "content": "The templates directory currently only contains a .gitkeep file. No templates have been added yet."}
+{"role": "user", "content": "Create a harvest-prompt.md template in the templates directory."}
+{"role": "assistant", "content": "I'll create the harvest-prompt.md template for you.", "tool_calls": [{"function": "terminal", "arguments": {"command": "cat > compounding-intelligence/templates/harvest-prompt.md << 'EOF'\n# Knowledge Extraction Prompt\n\nExtract knowledge from session transcripts.\nEOF"}}]}
+{"role": "tool", "content": ""}
+{"role": "assistant", "content": "Template created successfully. The harvest-prompt.md file is now in the templates directory."}

tests/test_ci_config.py

@@ -0,0 +1,19 @@
+from pathlib import Path
+
+
+def test_requirements_makefile_and_workflow_exist() -> None:
+    assert Path("requirements.txt").exists()
+    assert Path("Makefile").exists()
+    assert Path(".gitea/workflows/test.yml").exists()
+
+
+def test_ci_workflow_runs_project_test_command() -> None:
+    workflow = Path(".gitea/workflows/test.yml").read_text(encoding="utf-8")
+    requirements = Path("requirements.txt").read_text(encoding="utf-8")
+    makefile = Path("Makefile").read_text(encoding="utf-8")
+
+    assert "pytest" in requirements
+    assert "test:" in makefile
+    assert "python3 -m pytest tests/test_ci_config.py scripts/test_*.py -v" in makefile
+    assert "pip install -r requirements.txt" in workflow
+    assert "make test" in workflow