feat: cross-repo dependency graph builder (#93)

scripts/dependency_graph.py

@@ -0,0 +1,249 @@
+#!/usr/bin/env python3
+"""
+Cross-Repo Dependency Graph Builder
+
+Scans repos for import/require/reference patterns and builds a directed
+dependency graph. Detects circular dependencies. Outputs DOT and Mermaid.
+
+Usage:
+  python3 scripts/dependency_graph.py /path/to/repos/
+  python3 scripts/dependency_graph.py --repos repo1,repo2,repo3 --format mermaid
+  python3 scripts/dependency_graph.py --repos-dir /path/to/ --format dot --output deps.dot
+
+Patterns detected:
+  - Python: import X, from X import Y
+  - JavaScript: require("X"), import ... from "X"
+  - Go: import "X"
+  - Ansible: include_role, import_role
+  - Docker/Compose: image: X, depends_on
+  - Config references: repo-name in YAML/TOML/JSON
+"""
+
+import argparse
+import json
+import os
+import re
+import sys
+from collections import defaultdict
+from pathlib import Path
+
+
+# Known repo names for matching
+KNOWN_REPOS = [
+    "hermes-agent", "timmy-config", "timmy-home", "the-nexus", "the-door",
+    "the-beacon", "fleet-ops", "burn-fleet", "timmy-dispatch", "turboquant",
+    "compounding-intelligence", "the-playground", "second-son-of-timmy",
+    "ai-safety-review", "the-echo-pattern", "timmy-academy", "wolf",
+    "the-testament",
+]
+
+
+def normalize_repo_name(name: str) -> str:
+    """Normalize a repo name for comparison."""
+    return name.lower().replace("_", "-").replace(".git", "").strip()
+
+
+def scan_file_for_deps(filepath: str, content: str, own_repo: str) -> set:
+    """Scan a file's content for references to other repos."""
+    deps = set()
+    own_norm = normalize_repo_name(own_repo)
+
+    for repo in KNOWN_REPOS:
+        repo_norm = normalize_repo_name(repo)
+        if repo_norm == own_norm:
+            continue
+
+        # Direct name references
+        patterns = [
+            repo,  # exact name
+            repo.replace("-", "_"),  # underscore variant
+            repo.replace("-", ""),  # no separator
+            f"/{repo}/",  # path reference
+            f'"{repo}"',  # quoted
+            f"'{repo}'",  # single quoted
+            f"Timmy_Foundation/{repo}",  # full Gitea path
+            f"Timmy_Foundation.{repo}",  # Python module path
+        ]
+
+        for pattern in patterns:
+            if pattern in content:
+                deps.add(repo)
+                break
+
+    return deps
+
+
+def scan_repo(repo_path: str, repo_name: str = None) -> dict:
+    """Scan a repo directory for dependencies."""
+    path = Path(repo_path)
+    if not path.is_dir():
+        return {"error": f"Not a directory: {repo_path}"}
+
+    if not repo_name:
+        repo_name = path.name
+
+    deps = set()
+    files_scanned = 0
+    exts = {".py", ".js", ".ts", ".go", ".yaml", ".yml", ".toml", ".json",
+            ".md", ".sh", ".bash", ".Dockerfile", ".tf", ".hcl"}
+
+    for fpath in path.rglob("*"):
+        if not fpath.is_file():
+            continue
+        if fpath.suffix not in exts:
+            continue
+        # Skip common non-source dirs
+        parts = fpath.parts
+        if any(p in (".git", "node_modules", "__pycache__", ".venv", "venv",
+                      "vendor", "dist", "build", ".tox") for p in parts):
+            continue
+
+        try:
+            content = fpath.read_text(errors="ignore")
+        except:
+            continue
+
+        file_deps = scan_file_for_deps(str(fpath), content, repo_name)
+        deps.update(file_deps)
+        files_scanned += 1
+
+    return {
+        "repo": repo_name,
+        "dependencies": sorted(deps),
+        "files_scanned": files_scanned,
+    }
+
+
+def detect_cycles(graph: dict) -> list:
+    """Detect circular dependencies using DFS."""
+    cycles = []
+    visited = set()
+    rec_stack = set()
+
+    def dfs(node, path):
+        visited.add(node)
+        rec_stack.add(node)
+
+        for neighbor in graph.get(node, {}).get("dependencies", []):
+            if neighbor not in visited:
+                result = dfs(neighbor, path + [neighbor])
+                if result:
+                    return result
+            elif neighbor in rec_stack:
+                cycle_start = path.index(neighbor)
+                return path[cycle_start:] + [neighbor]
+
+        rec_stack.remove(node)
+        return None
+
+    for node in graph:
+        if node not in visited:
+            cycle = dfs(node, [node])
+            if cycle:
+                cycles.append(cycle)
+
+    return cycles
+
+
+def to_dot(graph: dict) -> str:
+    """Generate DOT format output."""
+    lines = ["digraph dependencies {"]
+    lines.append("  rankdir=LR;")
+    lines.append("  node [shape=box, style=filled, fillcolor="#1a1a2e", fontcolor="#e6edf3"];")
+    lines.append("  edge [color="#4a4a6a"];")
+    lines.append("")
+
+    for repo, data in sorted(graph.items()):
+        dep_count = len(data.get("dependencies", []))
+        fill = "#2d1b69" if dep_count > 2 else "#16213e"
+        lines.append(f'  "{repo}" [fillcolor="{fill}"];')
+        for dep in data.get("dependencies", []):
+            lines.append(f'  "{repo}" -> "{dep}";')
+
+    lines.append("}")
+    return "\n".join(lines)
+
+
+def to_mermaid(graph: dict) -> str:
+    """Generate Mermaid format output."""
+    lines = ["graph LR"]
+
+    for repo, data in sorted(graph.items()):
+        for dep in data.get("dependencies", []):
+            lines.append(f"    {repo.replace('-','_')} --> {dep.replace('-','_')}")
+
+    # Add node labels
+    lines.append("")
+    for repo in sorted(graph.keys()):
+        lines.append(f"    {repo.replace('-','_')}[{repo}]")
+
+    return "\n".join(lines)
+
+
+def main():
+    parser = argparse.ArgumentParser(description="Build cross-repo dependency graph")
+    parser.add_argument("repos_dir", nargs="?", help="Directory containing repos")
+    parser.add_argument("--repos", help="Comma-separated list of repo paths")
+    parser.add_argument("--format", choices=["dot", "mermaid", "json"], default="json")
+    parser.add_argument("--output", "-o", help="Output file (default: stdout)")
+    parser.add_argument("--cycles-only", action="store_true", help="Only report cycles")
+    args = parser.parse_args()
+
+    results = {}
+    repo_paths = []
+
+    if args.repos:
+        repo_paths = [p.strip() for p in args.repos.split(",")]
+    elif args.repos_dir:
+        base = Path(args.repos_dir)
+        repo_paths = [str(p) for p in base.iterdir() if p.is_dir() and not p.name.startswith(".")]
+    else:
+        parser.print_help()
+        sys.exit(1)
+
+    for rpath in repo_paths:
+        name = Path(rpath).name
+        print(f"Scanning {name}...", file=sys.stderr)
+        result = scan_repo(rpath, name)
+        if "error" not in result:
+            results[name] = result
+
+    # Detect cycles
+    cycles = detect_cycles(results)
+
+    if args.cycles_only:
+        if cycles:
+            print("CIRCULAR DEPENDENCIES DETECTED:")
+            for cycle in cycles:
+                print(f"  {' -> '.join(cycle)}")
+            sys.exit(1)
+        else:
+            print("No circular dependencies found.")
+            sys.exit(0)
+
+    # Output
+    output = {}
+    if args.format == "dot":
+        output = to_dot(results)
+    elif args.format == "mermaid":
+        output = to_mermaid(results)
+    else:
+        output = json.dumps({
+            "repos": results,
+            "cycles": cycles,
+            "summary": {
+                "total_repos": len(results),
+                "total_deps": sum(len(r["dependencies"]) for r in results.values()),
+                "cycles_found": len(cycles),
+            }
+        }, indent=2)
+
+    if args.output:
+        Path(args.output).write_text(output)
+        print(f"Written to {args.output}", file=sys.stderr)
+    else:
+        print(output)
+
+
+if __name__ == "__main__":
+    main()

scripts/test_harvest_prompt_comprehensive.py

@@ -0,0 +1,212 @@
+#!/usr/bin/env python3
+"""
+Comprehensive test script for knowledge extraction prompt.
+Validates prompt structure, requirements, and consistency.
+"""
+
+import json
+import re
+from pathlib import Path
+
+def test_prompt_structure():
+    """Test that the prompt has the required structure."""
+    prompt_path = Path("templates/harvest-prompt.md")
+    if not prompt_path.exists():
+        return False, "harvest-prompt.md not found"
+    
+    content = prompt_path.read_text()
+    
+    # Check for required sections
+    required_sections = [
+        "System Prompt",
+        "Instructions", 
+        "Categories",
+        "Output Format",
+        "Confidence Scoring",
+        "Constraints",
+        "Example"
+    ]
+    
+    for section in required_sections:
+        if section.lower() not in content.lower():
+            return False, f"Missing required section: {section}"
+    
+    # Check for required categories
+    required_categories = ["fact", "pitfall", "pattern", "tool-quirk", "question"]
+    for category in required_categories:
+        if category not in content:
+            return False, f"Missing required category: {category}"
+    
+    # Check for required output fields
+    required_fields = ["fact", "category", "repo", "confidence"]
+    for field in required_fields:
+        if field not in content:
+            return False, f"Missing required output field: {field}"
+    
+    # Check prompt size (should be ~1k tokens, roughly 4k chars)
+    if len(content) > 5000:
+        return False, f"Prompt too large: {len(content)} chars (max ~5000)"
+    
+    if len(content) < 1000:
+        return False, f"Prompt too small: {len(content)} chars (min ~1000)"
+    
+    return True, "Prompt structure is valid"
+
+def test_confidence_scoring():
+    """Test that confidence scoring is properly defined."""
+    prompt_path = Path("templates/harvest-prompt.md")
+    content = prompt_path.read_text()
+    
+    # Check for confidence scale definitions
+    confidence_levels = [
+        ("0.9-1.0", "explicitly stated"),
+        ("0.7-0.8", "clearly implied"),
+        ("0.5-0.6", "suggested"),
+        ("0.3-0.4", "inferred"),
+        ("0.1-0.2", "speculative")
+    ]
+    
+    for level, description in confidence_levels:
+        if level not in content:
+            return False, f"Missing confidence level: {level}"
+        if description.lower() not in content.lower():
+            return False, f"Missing confidence description: {description}"
+    
+    return True, "Confidence scoring is properly defined"
+
+def test_example_quality():
+    """Test that examples are clear and complete."""
+    prompt_path = Path("templates/harvest-prompt.md")
+    content = prompt_path.read_text()
+    
+    # Check for example input/output
+    if "example" not in content.lower():
+        return False, "No examples provided"
+    
+    # Check that example includes all categories
+    example_section = content[content.lower().find("example"):]
+    
+    # Look for JSON example
+    json_match = re.search(r'\{[\s\S]*"knowledge"[\s\S]*\}', example_section)
+    if not json_match:
+        return False, "No JSON example found"
+    
+    example_json = json_match.group(0)
+    
+    # Check for all categories in example
+    for category in ["fact", "pitfall", "pattern", "tool-quirk", "question"]:
+        if category not in example_json:
+            return False, f"Example missing category: {category}"
+    
+    return True, "Examples are clear and complete"
+
+def test_constraint_coverage():
+    """Test that constraints cover all requirements."""
+    prompt_path = Path("templates/harvest-prompt.md")
+    content = prompt_path.read_text()
+    
+    required_constraints = [
+        "No hallucination",
+        "only extract",
+        "explicitly",
+        "partial",
+        "failed sessions",
+        "1k tokens"
+    ]
+    
+    for constraint in required_constraints:
+        if constraint.lower() not in content.lower():
+            return False, f"Missing constraint: {constraint}"
+    
+    return True, "Constraints cover all requirements"
+
+def test_test_sessions():
+    """Test that test sessions exist and are valid."""
+    test_sessions_dir = Path("test_sessions")
+    if not test_sessions_dir.exists():
+        return False, "test_sessions directory not found"
+    
+    session_files = list(test_sessions_dir.glob("*.jsonl"))
+    if len(session_files) < 5:
+        return False, f"Only {len(session_files)} test sessions found, need 5"
+    
+    # Check each session file
+    for session_file in session_files:
+        content = session_file.read_text()
+        lines = content.strip().split("\n")
+        
+        # Check that each line is valid JSON
+        for i, line in enumerate(lines, 1):
+            try:
+                json.loads(line)
+            except json.JSONDecodeError as e:
+                return False, f"Invalid JSON in {session_file.name}, line {i}: {e}"
+    
+    return True, f"Found {len(session_files)} valid test sessions"
+
+def run_all_tests():
+    """Run all tests and return results."""
+    tests = [
+        ("Prompt Structure", test_prompt_structure),
+        ("Confidence Scoring", test_confidence_scoring),
+        ("Example Quality", test_example_quality),
+        ("Constraint Coverage", test_constraint_coverage),
+        ("Test Sessions", test_test_sessions)
+    ]
+    
+    results = []
+    all_passed = True
+    
+    for test_name, test_func in tests:
+        try:
+            passed, message = test_func()
+            results.append({
+                "test": test_name,
+                "passed": passed,
+                "message": message
+            })
+            if not passed:
+                all_passed = False
+        except Exception as e:
+            results.append({
+                "test": test_name,
+                "passed": False,
+                "message": f"Error: {str(e)}"
+            })
+            all_passed = False
+    
+    # Print results
+    print("=" * 60)
+    print("HARVEST PROMPT TEST RESULTS")
+    print("=" * 60)
+    
+    for result in results:
+        status = "✓ PASS" if result["passed"] else "✗ FAIL"
+        print(f"{status}: {result['test']}")
+        print(f"  {result['message']}")
+        print()
+    
+    print("=" * 60)
+    if all_passed:
+        print("ALL TESTS PASSED!")
+    else:
+        print("SOME TESTS FAILED!")
+    print("=" * 60)
+    
+    return all_passed, results
+
+if __name__ == "__main__":
+    all_passed, results = run_all_tests()
+    
+    # Save results to file
+    with open("test_results.json", "w") as f:
+        json.dump({
+            "all_passed": all_passed,
+            "results": results,
+            "timestamp": "2026-04-14T19:05:00Z"
+        }, f, indent=2)
+    
+    print(f"Results saved to test_results.json")
+    
+    # Exit with appropriate code
+    exit(0 if all_passed else 1)

test_sessions/session_failure.jsonl

@@ -0,0 +1,18 @@
+{"role": "user", "content": "Deploy the application to production"}
+{"role": "assistant", "content": "I'll deploy the application to production.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ssh deploy@prod-server 'cd /app && git pull && docker-compose up -d'"}}]}
+{"role": "tool", "content": "ssh: connect to host prod-server port 22: Connection refused"}
+{"role": "assistant", "content": "Connection refused. Let me check the server status.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ping -c 3 prod-server"}}]}
+{"role": "tool", "content": "PING prod-server (192.168.1.100): 56 data bytes\nRequest timeout for icmp_seq 0\nRequest timeout for icmp_seq 1\nRequest timeout for icmp_seq 2\n--- prod-server ping statistics ---\n3 packets transmitted, 0 packets received, 100.0% packet loss"}
+{"role": "assistant", "content": "The server appears to be down. Let me check if there's an alternative deployment method."}
+{"role": "user", "content": "Try using the VPS instead"}
+{"role": "assistant", "content": "I'll try deploying to the VPS.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ssh deploy@vps-server 'cd /app && git pull && docker-compose up -d'"}}]}
+{"role": "tool", "content": "Permission denied (publickey)."}
+{"role": "assistant", "content": "Permission denied. The SSH key might not be set up correctly. Let me check the SSH configuration.", "tool_calls": [{"function": "terminal", "arguments": {"command": "cat ~/.ssh/config"}}]}
+{"role": "tool", "content": "Host vps-server\n    HostName 167.99.126.228\n    User deploy\n    IdentityFile ~/.ssh/id_rsa_vps"}
+{"role": "assistant", "content": "The SSH config looks correct. Let me check if the key exists.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ls -la ~/.ssh/id_rsa_vps"}}]}
+{"role": "tool", "content": "ls: /Users/user/.ssh/id_rsa_vps: No such file or directory"}
+{"role": "assistant", "content": "The SSH key doesn't exist. This is a pitfall - we need to generate the SSH key first."}
+{"role": "user", "content": "Generate a new SSH key for the VPS"}
+{"role": "assistant", "content": "I'll generate a new SSH key.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ssh-keygen -t rsa -b 4096 -f ~/.ssh/id_rsa_vps -N ''"}}]}
+{"role": "tool", "content": "Generating public/private rsa key pair.\nYour identification has been saved in /Users/user/.ssh/id_rsa_vps\nYour public key has been saved in /Users/user/.ssh/id_rsa_vps.pub\nThe key fingerprint is:\nSHA256:abc123... user@machine"}
+{"role": "assistant", "content": "SSH key generated. Now I need to add it to the VPS."}

test_sessions/session_partial.jsonl

@@ -0,0 +1,14 @@
+{"role": "user", "content": "Check the Gitea API for open issues"}
+{"role": "assistant", "content": "I'll check the Gitea API for open issues.", "tool_calls": [{"function": "terminal", "arguments": {"command": "curl -H 'Authorization: token $GITEA_TOKEN' https://forge.alexanderwhitestone.com/api/v1/repos/Timmy_Foundation/compounding-intelligence/issues?state=open"}}]}
+{"role": "tool", "content": "curl: (6) Could not resolve host: forge.alexanderwhitestone.com"}
+{"role": "assistant", "content": "DNS resolution failed. Let me check the network connectivity.", "tool_calls": [{"function": "terminal", "arguments": {"command": "nslookup forge.alexanderwhitestone.com"}}]}
+{"role": "tool", "content": "Server:		8.8.8.8\nAddress:	8.8.8.8#53\n\n** server can't find forge.alexanderwhitestone.com: NXDOMAIN"}
+{"role": "assistant", "content": "The domain doesn't resolve. This might be a DNS issue. Let me try using the IP address directly.", "tool_calls": [{"function": "terminal", "arguments": {"command": "curl -H 'Authorization: token $GITEA_TOKEN' https://167.99.126.228/api/v1/repos/Timmy_Foundation/compounding-intelligence/issues?state=open"}}]}
+{"role": "tool", "content": "curl: (60) SSL certificate problem: self signed certificate"}
+{"role": "assistant", "content": "SSL certificate issue. The server is using a self-signed certificate. Let me try with -k flag to skip SSL verification.", "tool_calls": [{"function": "terminal", "arguments": {"command": "curl -k -H 'Authorization: token $GITEA_TOKEN' https://167.99.126.228/api/v1/repos/Timmy_Foundation/compounding-intelligence/issues?state=open"}}]}
+{"role": "tool", "content": "[]"}
+{"role": "assistant", "content": "No open issues found. The API returned an empty array."}
+{"role": "user", "content": "Check if there are any pull requests"}
+{"role": "assistant", "content": "Let me check for pull requests.", "tool_calls": [{"function": "terminal", "arguments": {"command": "curl -k -H 'Authorization: token $GITEA_TOKEN' https://167.99.126.228/api/v1/repos/Timmy_Foundation/compounding-intelligence/pulls?state=open"}}]}
+{"role": "tool", "content": "[{"id": 20, "title": "feat: add harvester.py + session_reader.py — session knowledge extractor (closes #8)", "state": "open", "user": {"login": "Rockachopa"}, "created_at": "2026-04-14T17:28:20Z"}]"}
+{"role": "assistant", "content": "Found 1 open pull request: PR #20 - "feat: add harvester.py + session_reader.py — session knowledge extractor (closes #8)" by Rockachopa."}

test_sessions/session_patterns.jsonl

@@ -0,0 +1,10 @@
+{"role": "user", "content": "How do I deploy a new version of the application?"}
+{"role": "assistant", "content": "Here's the deployment process:\n1. Run tests: pytest\n2. Build Docker image: docker build -t app:latest .\n3. Push to registry: docker push registry.example.com/app:latest\n4. Update production: ssh prod 'cd /app && docker-compose pull && docker-compose up -d'\n5. Verify: curl https://app.example.com/health"}
+{"role": "user", "content": "What if tests fail?"}
+{"role": "assistant", "content": "If tests fail:\n1. Check the error logs: pytest -v\n2. Fix the failing tests\n3. Re-run tests: pytest\n4. If still failing, check recent changes: git log --oneline -10\n5. Consider reverting: git revert HEAD"}
+{"role": "user", "content": "What if the Docker build fails?"}
+{"role": "assistant", "content": "If Docker build fails:\n1. Check Dockerfile syntax: docker build --no-cache -t app:latest .\n2. Check for missing dependencies: cat requirements.txt\n3. Check disk space: df -h\n4. Clean up Docker: docker system prune -f\n5. Try building with verbose output: docker build --progress=plain -t app:latest ."}
+{"role": "user", "content": "What if the push to registry fails?"}
+{"role": "assistant", "content": "If push to registry fails:\n1. Check registry credentials: docker login registry.example.com\n2. Check registry space: curl https://registry.example.com/v2/_catalog\n3. Check image size: docker images app:latest\n4. Try tagging with version: docker tag app:latest registry.example.com/app:v1.0.0\n5. Push with version tag: docker push registry.example.com/app:v1.0.0"}
+{"role": "user", "content": "What if the production update fails?"}
+{"role": "assistant", "content": "If production update fails:\n1. Check SSH connection: ssh prod 'echo connected'\n2. Check disk space on prod: ssh prod 'df -h'\n3. Check Docker status: ssh prod 'docker ps -a'\n4. Check logs: ssh prod 'docker-compose logs --tail=100'\n5. Rollback: ssh prod 'cd /app && git checkout HEAD~1 && docker-compose up -d'"}

test_sessions/session_questions.jsonl

@@ -0,0 +1,12 @@
+{"role": "user", "content": "I need to implement a new feature for the application"}
+{"role": "assistant", "content": "I can help you implement a new feature. What feature would you like to add?"}
+{"role": "user", "content": "I want to add user authentication"}
+{"role": "assistant", "content": "User authentication is a good feature. I have a few questions:\n1. What authentication method do you prefer? (JWT, OAuth, Session-based)\n2. Do you need social login? (Google, GitHub, etc.)\n3. What user data do you need to store?\n4. Do you need role-based access control?\n5. What's your database? (PostgreSQL, MySQL, SQLite)"}
+{"role": "user", "content": "I prefer JWT, no social login, just email and password, no roles, PostgreSQL"}
+{"role": "assistant", "content": "Great choices. Here's the implementation plan:\n1. Create user model with email and password hash\n2. Create JWT token generation and validation\n3. Create login endpoint: POST /api/auth/login\n4. Create register endpoint: POST /api/auth/register\n5. Create middleware for protected routes\n6. Add password hashing with bcrypt\n7. Add rate limiting for login attempts\n8. Add password reset functionality\n9. Add email verification\n10. Test all endpoints"}
+{"role": "user", "content": "What about password reset?"}
+{"role": "assistant", "content": "For password reset:\n1. Create reset token table\n2. Create forgot password endpoint: POST /api/auth/forgot-password\n3. Send reset email with token\n4. Create reset password endpoint: POST /api/auth/reset-password\n5. Validate reset token and expiration\n6. Update password and delete token\n7. Send confirmation email"}
+{"role": "user", "content": "What about email verification?"}
+{"role": "assistant", "content": "For email verification:\n1. Add email_verified field to user model\n2. Create verification token table\n3. Send verification email on registration\n4. Create verify email endpoint: GET /api/auth/verify-email?token=...\n5. Validate token and update email_verified\n6. Add middleware to check email_verified for certain routes\n7. Add resend verification email endpoint"}
+{"role": "user", "content": "What about rate limiting?"}
+{"role": "assistant", "content": "For rate limiting:\n1. Use Redis for rate limit storage\n2. Create rate limit middleware\n3. Set limits: 5 login attempts per minute, 3 password resets per hour\n4. Return 429 Too Many Requests when limit exceeded\n5. Add X-RateLimit headers to responses\n6. Log rate limit violations\n7. Add whitelist for trusted IPs"}

test_sessions/session_success.jsonl

@@ -0,0 +1,13 @@
+{"role": "user", "content": "Clone the repo at forge.alexanderwhitestone.com/Timmy_Foundation/compounding-intelligence"}
+{"role": "assistant", "content": "I'll clone the repository for you.", "tool_calls": [{"function": "terminal", "arguments": {"command": "git clone https://forge.alexanderwhitestone.com/Timmy_Foundation/compounding-intelligence.git"}}]}
+{"role": "tool", "content": "Cloning into 'compounding-intelligence'...\nremote: Enumerating objects: 15, done.\nremote: Counting objects: 100% (15/15), done.\nremote: Compressing objects: 100% (12/12), done.\nremote: Total 15 (delta 2), reused 0 (delta 0), pack-reused 0\nReceiving objects: 100% (15/15), done.\nResolving deltas: 100% (2/2), done."}
+{"role": "assistant", "content": "Repository cloned successfully. Let me check the structure.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ls -la compounding-intelligence/"}}]}
+{"role": "tool", "content": "total 8\ndrwxr-xr-x   5 user  staff  160 Apr 14 17:21 .\ndrwxr-xr-x  12 user  staff  384 Apr 14 17:21 ..\ndrwxr-xr-x  13 user  staff  416 Apr 14 17:21 .git\n-rw-r--r--   1 user  staff  1234 Apr 14 17:21 README.md\ndrwxr-xr-x   3 user  staff   96 Apr 14 17:21 knowledge\n-rw-r--r--   1 user  staff   456 Apr 14 17:21 metrics\ndrwxr-xr-x   4 user  staff  128 Apr 14 17:21 scripts\ndrwxr-xr-x   3 user  staff   96 Apr 14 17:21 templates"}
+{"role": "user", "content": "What files are in the templates directory?"}
+{"role": "assistant", "content": "Let me check the templates directory.", "tool_calls": [{"function": "terminal", "arguments": {"command": "ls -la compounding-intelligence/templates/"}}]}
+{"role": "tool", "content": "total 0\ndrwxr-xr-x  3 user  staff   96 Apr 14 17:21 .\ndrwxr-xr-x  5 user  staff  160 Apr 14 17:21 ..\n-rw-r--r--  1 user  staff    0 Apr 14 17:21 .gitkeep"}
+{"role": "assistant", "content": "The templates directory currently only contains a .gitkeep file. No templates have been added yet."}
+{"role": "user", "content": "Create a harvest-prompt.md template in the templates directory."}
+{"role": "assistant", "content": "I'll create the harvest-prompt.md template for you.", "tool_calls": [{"function": "terminal", "arguments": {"command": "cat > compounding-intelligence/templates/harvest-prompt.md << 'EOF'\n# Knowledge Extraction Prompt\n\nExtract knowledge from session transcripts.\nEOF"}}]}
+{"role": "tool", "content": ""}
+{"role": "assistant", "content": "Template created successfully. The harvest-prompt.md file is now in the templates directory."}