Two bugs in sync_skills():
1. Failed copytree poisons manifest: when shutil.copytree fails (disk
full, permission error), the skill is still recorded in the manifest.
On the next sync, the skill appears as "in manifest but not on disk"
which is interpreted as "user deliberately deleted it" — the skill
is never retried. Fix: only write to manifest on successful copy.
2. Failed update destroys user copy: rmtree deletes the existing skill
directory before copytree runs. If copytree then fails, the user's
skill is gone with no way to recover. Fix: move to .bak before
copying, restore from backup if copytree fails.
Both bugs are proven by new regression tests that fail on the old code
and pass on the fix.
Upgrade skills_sync manifest to v2 format (name:origin_hash). The origin
hash records the MD5 of the bundled skill at the time it was last synced.
On update, the user's copy is compared against the origin hash:
- User copy == origin hash → unmodified → safe to update from bundled
- User copy != origin hash → user customized → skip (preserve changes)
v1 manifests (plain names) are auto-migrated: the user's current hash
becomes the baseline, so future syncs can detect modifications.
Output now shows user-modified skills:
~ whisper (user-modified, skipping)
27 tests covering all scenarios including v1→v2 migration, user
modification detection, update after migration, and origin hash tracking.
2009 tests pass.
- Restored 21 skills removed in commits 757d012 and 740dd92:
accelerate, audiocraft, code-review, faiss, flash-attention, gguf,
grpo-rl-training, guidance, llava, nemo-curator, obliteratus, peft,
pytorch-fsdp, pytorch-lightning, simpo, slime, stable-diffusion,
tensorrt-llm, torchtitan, trl-fine-tuning, whisper
- Rewrote sync_skills() with proper update semantics:
* New skills (not in manifest): copied to user dir
* Existing skills (in manifest + on disk): updated via hash comparison
* User-deleted skills (in manifest, not on disk): respected, not re-added
* Stale manifest entries (removed from bundled): cleaned from manifest
- Added sync_skills() to CLI startup (cmd_chat) and gateway startup
(start_gateway) — previously only ran during 'hermes update'
- Updated cmd_update output to show new/updated/cleaned counts
- Rewrote tests: 20 tests covering manifest CRUD, dir hashing, fresh
install, user deletion respect, update detection, stale cleanup, and
name collision handling
75 bundled skills total. 2002 tests pass.
