Comprehensive cleanup across 80 files based on automated (ruff, pyflakes, vulture)
and manual analysis of the entire codebase.
Changes by category:
Unused imports removed (~95 across 55 files):
- Removed genuinely unused imports from all major subsystems
- agent/, hermes_cli/, tools/, gateway/, plugins/, cron/
- Includes imports in try/except blocks that were truly unused
(vs availability checks which were left alone)
Unused variables removed (~25):
- Removed dead variables: connected, inner, channels, last_exc,
source, new_server_names, verify, pconfig, default_terminal,
result, pending_handled, temperature, loop
- Dropped unused argparse subparser assignments in hermes_cli/main.py
(12 instances of add_parser() where result was never used)
Dead code removed:
- run_agent.py: Removed dead ternary (None if False else None) and
surrounding unreachable branch in identity fallback
- run_agent.py: Removed write-only attribute _last_reported_tool
- hermes_cli/providers.py: Removed dead @property decorator on
module-level function (decorator has no effect outside a class)
- gateway/run.py: Removed unused MCP config load before reconnect
- gateway/platforms/slack.py: Removed dead SessionSource construction
Undefined name bugs fixed (would cause NameError at runtime):
- batch_runner.py: Added missing logger = logging.getLogger(__name__)
- tools/environments/daytona.py: Added missing Dict and Path imports
Unnecessary global statements removed (14):
- tools/terminal_tool.py: 5 functions declared global for dicts
they only mutated via .pop()/[key]=value (no rebinding)
- tools/browser_tool.py: cleanup thread loop only reads flag
- tools/rl_training_tool.py: 4 functions only do dict mutations
- tools/mcp_oauth.py: only reads the global
- hermes_time.py: only reads cached values
Inefficient patterns fixed:
- startswith/endswith tuple form: 15 instances of
x.startswith('a') or x.startswith('b') consolidated to
x.startswith(('a', 'b'))
- len(x)==0 / len(x)>0: 13 instances replaced with pythonic
truthiness checks (not x / bool(x))
- in dict.keys(): 5 instances simplified to in dict
- Redefined unused name: removed duplicate _strip_mdv2 import in
send_message_tool.py
Other fixes:
- hermes_cli/doctor.py: Replaced undefined logger.debug() with pass
- hermes_cli/config.py: Consolidated chained .endswith() calls
Test results: 3934 passed, 17 failed (all pre-existing on main),
19 skipped. Zero regressions.
Shell injection via unquoted workdir interpolation in docker, singularity,
and SSH backends. When workdir contained shell metacharacters (e.g.
~/;id), arbitrary commands could execute.
Changes:
- Add shlex.quote() at each interpolation point in docker.py,
singularity.py, and ssh.py with tilde-aware quoting (keep ~
unquoted for shell expansion, quote only the subpath)
- Add _validate_workdir() allowlist in terminal_tool.py as
defense-in-depth before workdir reaches any backend
Original work by Mariano A. Nicolini (PR #5620). Salvaged with fixes
for tilde expansion (shlex.quote breaks cd ~/path) and replaced
incomplete deny-list with strict character allowlist.
Co-authored-by: Mariano A. Nicolini <entropidelic@users.noreply.github.com>
The config key skills.external_dirs and core resolution (get_all_skills_dirs,
get_external_skills_dirs in agent/skill_utils.py) already existed but several
code paths still only scanned SKILLS_DIR. Now external dirs are respected
everywhere:
- skills_categories(): scan all dirs for category discovery
- _get_category_from_path(): resolve categories against any skills root
- skill_manager_tool._find_skill(): search all dirs for edit/patch/delete
- credential_files.get_skills_directory_mount(): mount all dirs into
Docker/Singularity containers (external dirs at external_skills/<idx>)
- credential_files.iter_skills_files(): list files from all dirs for
Modal/Daytona upload
- tools/environments/ssh.py: rsync all skill dirs to remote hosts
- gateway _check_unavailable_skill(): check disabled skills across all dirs
Usage in config.yaml:
skills:
external_dirs:
- ~/repos/agent-skills/hermes
- /shared/team-skills
Skills with scripts/, templates/, and references/ subdirectories need
those files available inside sandboxed execution environments. Previously
the skills directory was missing entirely from remote backends.
Live sync — files stay current as credentials refresh and skills update:
- Docker/Singularity: bind mounts are inherently live (host changes
visible immediately)
- Modal: _sync_files() runs before each command with mtime+size caching,
pushing only changed credential and skill files (~13μs no-op overhead)
- SSH: rsync --safe-links before each command (naturally incremental)
- Daytona: _upload_if_changed() with mtime+size caching before each command
Security — symlink filtering:
- Docker/Singularity: sanitized temp copy when symlinks detected
- Modal/Daytona: iter_skills_files() skips symlinks
- SSH: rsync --safe-links skips symlinks pointing outside source tree
- Temp dir cleanup via atexit + reuse across calls
Non-root user support:
- SSH: detects remote home via echo $HOME, syncs to $HOME/.hermes/
- Daytona: detects sandbox home before sync, uploads to $HOME/.hermes/
- Docker/Modal/Singularity: run as root, /root/.hermes/ is correct
Also:
- credential_files.py: fix name/path key fallback in required_credential_files
- Singularity, SSH, Daytona: gained credential file support
- 14 tests covering symlink filtering, name/path fallback, iter_skills_files
When neither apptainer nor singularity is installed, the Singularity
backend silently defaults to "singularity" and fails with a cryptic
FileNotFoundError inside _start_instance(). Add a preflight check
that resolves the executable and verifies it responds, raising a
clear RuntimeError with install instructions on failure.
Closes#1511
- Added a new section in the README for Inference Providers, detailing setup instructions for Nous Portal, OpenRouter, and Custom Endpoints, improving user guidance for LLM connections.
- Updated messaging platform setup instructions to include Slack and WhatsApp, providing clearer steps for configuration.
- Introduced a new environment variable, TERMINAL_SANDBOX_DIR, to allow users to customize the sandbox storage location for Docker and Singularity environments.
- Refactored the Docker and Singularity environment classes to utilize the new sandbox directory for persistent workspaces, enhancing organization and usability.
- Improved handling of working directories across various environments, ensuring compatibility and clarity in execution paths.
- Introduced a shared interrupt signaling mechanism to allow tools to check for user interrupts during long-running operations.
- Updated the AIAgent to handle interrupts more effectively, ensuring in-progress tool calls are canceled and multiple interrupt messages are combined into one prompt.
- Enhanced the CLI configuration to include container resource limits (CPU, memory, disk) and persistence options for Docker, Singularity, and Modal environments.
- Improved documentation to clarify interrupt behaviors and container resource settings, providing users with better guidance on configuration and usage.
