hermes-agent/website/docs/user-guide/features/batch-processing.md

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12	Batch Processing	Generate agent trajectories at scale — parallel processing, checkpointing, and toolset distributions

Batch Processing

Batch processing lets you run the Hermes agent across hundreds or thousands of prompts in parallel, generating structured trajectory data. This is primarily used for training data generation — producing ShareGPT-format trajectories with tool usage statistics that can be used for fine-tuning or evaluation.

Overview

The batch runner (batch_runner.py) processes a JSONL dataset of prompts, running each through a full agent session with tool access. Each prompt gets its own isolated environment. The output is structured trajectory data with full conversation history, tool call statistics, and reasoning coverage metrics.

Quick Start

# Basic batch run
python batch_runner.py \
    --dataset_file=data/prompts.jsonl \
    --batch_size=10 \
    --run_name=my_first_run \
    --model=anthropic/claude-sonnet-4.6 \
    --num_workers=4

# Resume an interrupted run
python batch_runner.py \
    --dataset_file=data/prompts.jsonl \
    --batch_size=10 \
    --run_name=my_first_run \
    --resume

# List available toolset distributions
python batch_runner.py --list_distributions

Dataset Format

The input dataset is a JSONL file (one JSON object per line). Each entry must have a prompt field:

{"prompt": "Write a Python function that finds the longest palindromic substring"}
{"prompt": "Create a REST API endpoint for user authentication using Flask"}
{"prompt": "Debug this error: TypeError: cannot unpack non-iterable NoneType object"}

Entries can optionally include:

• image or docker_image: A container image to use for this prompt's sandbox (works with Docker, Modal, and Singularity backends)
• cwd: Working directory override for the task's terminal session

Configuration Options

Parameter	Default	Description
--dataset_file	(required)	Path to JSONL dataset
--batch_size	(required)	Prompts per batch
--run_name	(required)	Name for this run (used for output dir and checkpointing)
--distribution	"default"	Toolset distribution to sample from
--model	claude-sonnet-4.6	Model to use
--base_url	https://openrouter.ai/api/v1	API base URL
--api_key	(env var)	API key for model
--max_turns	10	Maximum tool-calling iterations per prompt
--num_workers	4	Parallel worker processes
--resume	false	Resume from checkpoint
--verbose	false	Enable verbose logging
--max_samples	all	Only process first N samples from dataset
--max_tokens	model default	Maximum tokens per model response

Provider Routing (OpenRouter)

Parameter	Description
--providers_allowed	Comma-separated providers to allow (e.g., "anthropic,openai")
--providers_ignored	Comma-separated providers to ignore (e.g., "together,deepinfra")
--providers_order	Comma-separated preferred provider order
--provider_sort	Sort by "price", "throughput", or "latency"

Reasoning Control

Parameter	Description
--reasoning_effort	Effort level: xhigh, high, medium, low, minimal, none
--reasoning_disabled	Completely disable reasoning/thinking tokens

Advanced Options

Parameter	Description
--ephemeral_system_prompt	System prompt used during execution but NOT saved to trajectories
--log_prefix_chars	Characters to show in log previews (default: 100)
--prefill_messages_file	Path to JSON file with prefill messages for few-shot priming

Toolset Distributions

Each prompt gets a randomly sampled set of toolsets from a distribution. This ensures training data covers diverse tool combinations. Use --list_distributions to see all available distributions.

In the current implementation, distributions assign a probability to each individual toolset. The sampler flips each toolset independently, then guarantees that at least one toolset is enabled. This is different from a hand-authored table of prebuilt combinations.

Output Format

All output goes to data/<run_name>/:

data/my_run/
├── trajectories.jsonl    # Combined final output (all batches merged)
├── batch_0.jsonl         # Individual batch results
├── batch_1.jsonl
├── ...
├── checkpoint.json       # Resume checkpoint
└── statistics.json       # Aggregate tool usage stats

Trajectory Format

Each line in trajectories.jsonl is a JSON object:

{
  "prompt_index": 42,
  "conversations": [
    {"from": "human", "value": "Write a function..."},
    {"from": "gpt", "value": "I'll create that function...",
     "tool_calls": [...]},
    {"from": "tool", "value": "..."},
    {"from": "gpt", "value": "Here's the completed function..."}
  ],
  "metadata": {
    "batch_num": 2,
    "timestamp": "2026-01-15T10:30:00",
    "model": "anthropic/claude-sonnet-4.6"
  },
  "completed": true,
  "partial": false,
  "api_calls": 3,
  "toolsets_used": ["terminal", "file"],
  "tool_stats": {
    "terminal": {"count": 2, "success": 2, "failure": 0},
    "read_file": {"count": 1, "success": 1, "failure": 0}
  },
  "tool_error_counts": {
    "terminal": 0,
    "read_file": 0
  }
}

The conversations field uses a ShareGPT-like format with from and value fields. Tool stats are normalized to include all possible tools with zero defaults, ensuring consistent schema across entries for HuggingFace datasets compatibility.

Checkpointing

The batch runner has robust checkpointing for fault tolerance:

• Checkpoint file: Saved after each batch completes, tracking which prompt indices are done
• Content-based resume: On --resume, the runner scans existing batch files and matches completed prompts by their actual text content (not just indices), enabling recovery even if the dataset order changes
• Failed prompts: Only successfully completed prompts are marked as done — failed prompts will be retried on resume
• Batch merging: On completion, all batch files (including from previous runs) are merged into a single trajectories.jsonl

How Resume Works

1. Scan all batch_*.jsonl files for completed prompts (by content matching)
2. Filter the dataset to exclude already-completed prompts
3. Re-batch the remaining prompts
4. Process only the remaining prompts
5. Merge all batch files (old + new) into final output

Quality Filtering

The batch runner applies automatic quality filtering:

• No-reasoning filter: Samples where zero assistant turns contain reasoning (no <REASONING_SCRATCHPAD> or native thinking tokens) are discarded
• Corrupted entry filter: Entries with hallucinated tool names (not in the valid tool list) are filtered out during the final merge
• Reasoning statistics: Tracks percentage of turns with/without reasoning across the entire run

Statistics

After completion, the runner prints comprehensive statistics:

• Tool usage: Call counts, success/failure rates per tool
• Reasoning coverage: Percentage of assistant turns with reasoning
• Samples discarded: Count of samples filtered for lacking reasoning
• Duration: Total processing time

Statistics are also saved to statistics.json for programmatic analysis.

Use Cases

Training Data Generation

Generate diverse tool-use trajectories for fine-tuning:

python batch_runner.py \
    --dataset_file=data/coding_prompts.jsonl \
    --batch_size=20 \
    --run_name=coding_v1 \
    --model=anthropic/claude-sonnet-4.6 \
    --num_workers=8 \
    --distribution=default \
    --max_turns=15

Model Evaluation

Evaluate how well a model uses tools across standardized prompts:

python batch_runner.py \
    --dataset_file=data/eval_suite.jsonl \
    --batch_size=10 \
    --run_name=eval_gpt4 \
    --model=openai/gpt-4o \
    --num_workers=4 \
    --max_turns=10

Per-Prompt Container Images

For benchmarks requiring specific environments, each prompt can specify its own container image:

{"prompt": "Install numpy and compute eigenvalues of a 3x3 matrix", "image": "python:3.11-slim"}
{"prompt": "Compile this Rust program and run it", "image": "rust:1.75"}
{"prompt": "Set up a Node.js Express server", "image": "node:20-alpine", "cwd": "/app"}

The batch runner verifies Docker images are accessible before running each prompt.