Alexander Whitestone 75e31bee27 feat(atlas): lossless context + memory subsystem from hermes-lcm and gbrain ...

Implements the ATLAS (Adaptive Turn-Lineage Archival System) lossless
memory subsystem as described in issue #985. All 183 fixture-backed
tests pass.

agent/atlas/ — modular ATLAS package:
- turns.py: RawTurnStore, immutable append-only turn records with stable
  lineage IDs (session_id:seq:06d format). Turns are never deleted.
- dag.py: SummaryDAGStore, compaction that creates summary nodes storing
  source_turn_ids — every compaction is traceable back to raw turns.
- stores.py: WorldKnowledgeStore, DurableMemoryStore, SessionStateStore
  with strict routing (no mixed bucket).
- extractor.py: TypedLinkExtractor, deterministic regex-based extraction
  of 7 typed relation types on every write (no LLM calls):
  DEFINES, MODIFIES, REFERENCES, DEPENDS_ON, CONTRADICTS, PREFERS, LOCATES
- recall.py: RecallEngine with 3 explicit recall ops: search/describe/expand
- db.py: AtlasDB SQLite connection/schema bootstrap

agent/atlas_memory.py — AtlasMemory facade (higher-level API)
agent/lossless_context.py — JSONL-based lossless context subsystem
plugins/memory/atlas/ — MemoryProvider plugin wiring into Hermes lifecycle
tools/lossless_recall_tool.py — lossless_recall tool (search/describe/expand)
tools/memory_tool.py — extended with world_knowledge store target

tests/ — 183 fixture-backed tests covering all acceptance criteria:
- Every turn persisted with stable lineage IDs ✅
- Compaction builds retrievable summary DAG nodes with source references ✅
- 3 explicit recall operations (search/describe/expand) ✅
- Writes route to explicit stores (no mixed bucket) ✅
- 7 typed relation types with fixture-backed tests ✅
- test_recover_fact_from_compacted_context proves fact recovery without
  re-injecting the full original transcript ✅

Fixes #985

2026-04-22 10:15:21 -04:00

..

browser_providers

feat: switch managed browser provider from Browserbase to Browser Use (#5750)

2026-04-07 08:40:22 -04:00

environments

feat: entry-level Podman support — find_docker() + rootless entrypoint (#10066)

2026-04-14 21:20:37 -07:00

neutts_samples

refactor(tts): replace NeuTTS optional skill with built-in provider + setup flow

2026-03-17 02:33:12 -07:00

shield

feat: add tools/shield/detector.py for SHIELD defense

2026-04-20 15:54:43 +00:00

__init__.py

Merge branch 'main' into rewbs/tool-use-charge-to-subscription

2026-03-31 08:48:54 +09:00

ansi_strip.py

fix: strip ANSI at the source — clean terminal output before it reaches the model

2026-03-23 07:43:12 -07:00

approval.py

feat: add Vitalik's threat model patterns to DANGEROUS_PATTERNS

2026-04-16 01:35:49 +00:00

batch_executor.py

feat: batch tool execution with parallel safety checks (#749)

2026-04-15 22:17:16 -04:00

binary_extensions.py

fix(tools): address PR review — remove _extract_raw_output, BudgetConfig everywhere, read_file hardening

2026-04-08 02:24:32 -07:00

browser_camofox_state.py

feat(browser): add persistent Camofox sessions and VNC URL discovery (salvage #4400) (#4419)

2026-04-01 04:18:50 -07:00

browser_camofox.py

fix: remove 115 verified dead code symbols across 46 production files

2026-04-10 03:44:43 -07:00

browser_harness.py

feat(#394): Self-healing browser CDP layer (browser-harness)

2026-04-21 05:33:32 +00:00

browser_tool.py

Merge pull request '[claude] Wire Gemma 4 vision into browser_tool for screenshot analysis (#816)' (#947) from claude/issue-816 into main

2026-04-22 13:36:20 +00:00

budget_config.py

fix: preserve existing thresholds, remove pre-read byte guard

2026-04-08 02:24:32 -07:00

checkpoint_manager.py

fix: normalize checkpoint manager home-relative paths

2026-04-11 14:50:44 -07:00

clarify_tool.py

refactor: add tool_error/tool_result helpers + read_raw_config, migrate 129 callsites

2026-04-07 13:36:38 -07:00

code_execution_tool.py

feat: Python syntax validation before execute_code (#913)

2026-04-20 15:46:23 +00:00

confirmation_daemon.py

feat: poka-yoke — prevent hardcoded ~/.hermes paths (closes #835)

2026-04-15 22:56:32 -04:00

credential_files.py

refactor: extract shared helpers to deduplicate repeated code patterns (#7917)

2026-04-11 13:59:52 -07:00

credential_redact.py

feat: Add credential redaction for tool outputs (#839)

2026-04-17 05:21:25 +00:00

crisis_tool.py

feat: add crisis detection tool — the-door integration (#141)

2026-04-15 21:00:06 -04:00

cronjob_tools.py

fix: replace hardcoded ~/.hermes with display_hermes_home() in agent-facing text (#10285)

2026-04-15 04:57:55 -07:00

debug_helpers.py

refactor: codebase-wide lint cleanup — unused imports, dead code, and inefficient patterns (#5821)

2026-04-07 10:25:31 -07:00

delegate_tool.py

fix: list all available toolsets in delegate_task schema description (#8231)

2026-04-12 00:54:35 -07:00

env_passthrough.py

refactor: remove dead code — 1,784 lines across 77 files (#9180)

2026-04-13 16:32:04 -07:00

file_operations.py

feat: improve file search UX — fuzzy @ completions, mtime sorting, better suggestions (#9467)

2026-04-13 23:54:45 -07:00

file_tools.py

feat: add Fleet-Wide File Concurrency Guard

2026-04-22 02:55:04 +00:00

fuzzy_match.py

fix(patch): harden V4A patch parser and fuzzy match — 9 correctness bugs

2026-04-10 16:47:44 -07:00

hardcoded_path_guard.py

feat: add hardcoded path guard module (#921)

2026-04-21 00:29:12 +00:00

homeassistant_tool.py

fix: clean up description escaping, add string-data tests

2026-04-13 04:45:07 -07:00

image_generation_tool.py

refactor: remove dead code — 1,784 lines across 77 files (#9180)

2026-04-13 16:32:04 -07:00

interrupt.py

fix: scope tool interrupt signal per-thread to prevent cross-session leaks (#7930)

2026-04-11 14:02:58 -07:00

local_inference_tool.py

feat: Local Inference Bridge — Bypassing cloud for local tasks

2026-04-22 03:01:37 +00:00

lossless_recall_tool.py

feat(atlas): lossless context + memory subsystem from hermes-lcm and gbrain

2026-04-22 10:15:21 -04:00

managed_tool_gateway.py

fix(tools): add debug logging for token refresh and tighten domain check

2026-04-02 12:40:03 +11:00

mcp_oauth.py

fix(approval,mcp): log silent exception handlers, narrow OAuth catches, close server on error

2026-04-10 03:05:04 -07:00

mcp_tool.py

docs: fix stale docstring reference to _discover_tools in mcp_tool.py

2026-04-14 21:12:29 -07:00

memory_tool.py

feat(atlas): lossless context + memory subsystem from hermes-lcm and gbrain

2026-04-22 10:15:21 -04:00

mixture_of_agents_tool.py

refactor: remove dead code — 1,784 lines across 77 files (#9180)

2026-04-13 16:32:04 -07:00

neutts_synth.py

fix(tts): document NeuTTS provider and align install guidance (#1903)

2026-03-18 02:55:30 -07:00

openrouter_client.py

refactor: route ad-hoc LLM consumers through centralized provider router

2026-03-11 20:02:36 -07:00

osv_check.py

feat: OSV malware check for MCP extension packages (#5305)

2026-04-05 12:46:07 -07:00

patch_parser.py

fix(patch): harden V4A patch parser and fuzzy match — 9 correctness bugs

2026-04-10 16:47:44 -07:00

path_guard.py

test: verify hardcoded-home path guard from burn/921 branch

2026-04-21 22:26:54 -04:00

path_security.py

refactor: extract shared helpers to deduplicate repeated code patterns (#7917)

2026-04-11 13:59:52 -07:00

poka_yoke.py

feat: poka-yoke tool call validation firewall (#922)

2026-04-21 11:59:25 +00:00

process_registry.py

fix: suppress duplicate completion notifications when agent already consumed output via wait/poll/log (#8228)

2026-04-12 00:36:22 -07:00

registry.py

feat: batch tool execution with parallel safety checks (#749)

2026-04-15 22:17:16 -04:00

rl_training_tool.py

refactor: codebase-wide lint cleanup — unused imports, dead code, and inefficient patterns (#5821)

2026-04-07 10:25:31 -07:00

scavenger_fixer.py

feat: Scavenger Fixer — Autonomous tech debt healing

2026-04-22 03:15:17 +00:00

send_message_tool.py

fix: file handle bug, warning text, and tests for Discord media send

2026-04-15 04:16:06 -07:00

session_search_tool.py

fix(session_search): improve truncation to center on actual query matches

2026-04-13 04:54:42 -07:00

session_templates.py

feat: add session templates

2026-04-20 15:56:26 +00:00

skill_manager_tool.py

feat: poka-yoke auto-revert for incomplete skill edits (#923)

2026-04-21 11:37:55 -04:00

skills_guard.py

refactor: remove dead code — 1,784 lines across 77 files (#9180)

2026-04-13 16:32:04 -07:00

skills_hub.py

feat(skills): centralized skills index — eliminate GitHub API calls for search/install

2026-04-12 16:39:04 -07:00

skills_sync.py

fix(skills): read name from SKILL.md frontmatter in skills_sync

2026-04-11 01:21:20 -07:00

skills_tool.py

fix: replace hardcoded ~/.hermes with display_hermes_home() in agent-facing text (#10285)

2026-04-15 04:57:55 -07:00

sovereign_router.py

feat: Budgetary Sovereign Router — Complexity-aware steering

2026-04-22 13:28:31 +00:00

sovereign_scavenger.py

feat: Sovereign Scavenger — Turning tech debt into actionable backlog

2026-04-22 03:07:40 +00:00

sovereign_teleport.py

feat: Sovereign Teleport — Cross-environment agent migration

2026-04-22 13:28:25 +00:00

static_analyzer.py

feat: Static Risk Analyzer (GOFAI) for execution safety

2026-04-22 03:02:02 +00:00

symbolic_verify.py

feat: Symbolic Sentry (GOFAI) for deterministic code audits

2026-04-22 03:00:44 +00:00

terminal_tool.py

refactor: remove dead code — 1,784 lines across 77 files (#9180)

2026-04-13 16:32:04 -07:00

tirith_security.py

chore: fix 154 f-strings, simplify getattr/URL patterns, remove dead code (#3119)

2026-03-25 19:47:58 -07:00

todo_tool.py

fix(tools): enforce ID uniqueness in TODO store during replace operations

2026-04-11 16:22:50 -07:00

tool_backend_helpers.py

Merge branch 'main' into rewbs/tool-use-charge-to-subscription

2026-03-31 08:48:54 +09:00

tool_pokayoke.py

feat: add tool hallucination prevention module (#836)

2026-04-16 02:10:39 +00:00

tool_result_storage.py

fix(tools): neutralize shell injection in _write_to_sandbox via path quoting (#7940)

2026-04-11 14:26:11 -07:00

tool_validator.py

fix(#922): Poka-yoke — detect and block tool hallucination

2026-04-21 05:38:22 +00:00

transcription_tools.py

refactor: remove dead code — 1,784 lines across 77 files (#9180)

2026-04-13 16:32:04 -07:00

tts_tool.py

fix: replace hardcoded ~/.hermes with display_hermes_home() in agent-facing text (#10285)

2026-04-15 04:57:55 -07:00

ultraplan.py

fix: Ultraplan Mode for daily autonomous planning (closes #840)

2026-04-15 22:14:16 -04:00

url_safety.py

fix: make safe_url_for_log public, add SSRF redirect guards to base.py cache helpers

2026-04-10 05:04:28 -07:00

verify_tool.py

feat: add verify_impact tool for regression guarding

2026-04-22 02:56:33 +00:00

vision_tools.py

refactor: remove dead code — 1,784 lines across 77 files (#9180)

2026-04-13 16:32:04 -07:00

voice_mode.py

refactor: remove dead code — 1,784 lines across 77 files (#9180)

2026-04-13 16:32:04 -07:00

web_cockpit.py

feat(#394): Hermes web UI operator cockpit

2026-04-21 05:34:22 +00:00

web_tools.py

refactor: remove dead code — 1,784 lines across 77 files (#9180)

2026-04-13 16:32:04 -07:00

website_policy.py

refactor: codebase-wide lint cleanup — unused imports, dead code, and inefficient patterns (#5821)

2026-04-07 10:25:31 -07:00