* refactor: suffix runtimeDeps PATH so apt-installed tools take priority
Changes makeWrapper from --prefix to --suffix. In container mode,
tools installed via apt in /usr/bin now win over read-only nix store
copies. Nix store versions become dead-letter fallbacks. Native NixOS
mode unaffected — tools in /run/current-system/sw/bin already precede
the suffix.
* feat(container): first-boot apt provisioning for agent tools
Installs nodejs, npm, curl via apt and uv via curl on first container
boot. Uses sentinel file so subsequent boots skip. Container recreation
triggers fresh install. Combined with --suffix PATH change, agents get
mutable tools that support npm i -g and uv without hitting read-only
nix store paths.
* docs: update nixosModules header for tool provisioning
* feat(container): consolidate first-boot provisioning + Python 3.11 venv
Merge sudo and tool apt installs into a single apt-get update call.
Move uv install outside the sentinel so transient failures retry on
next boot. Bootstrap a Python 3.11 venv via uv (--seed for pip) and
prepend ~/.venv/bin to PATH so agents get writable python/pip/node
out of the box.
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Co-authored-by: Hermes Agent <hermes@nousresearch.com>
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