- Added support for sudo commands in local, Docker, Singularity, and SSH environments by introducing the `SUDO_PASSWORD` environment variable.
- Updated terminal tool configurations in `.env.example` and `cli-config.yaml.example` to document the new sudo functionality.
- Enhanced the command execution process to handle sudo commands gracefully, preventing hangs on interactive prompts and providing clear error messages when no password is configured.
- Updated `README.md` to include instructions for using sudo support and SSH backend configuration.
- Revised `TODO.md` to reflect the completion of the sudo feature and outline future enhancements.
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