- Updated the _SingularityEnvironment class to utilize a persistent Apptainer instance, allowing state (files, installs, environment changes) to persist across commands.
- Enhanced the initialization process to start a background instance with full isolation and writable filesystem.
- Modified the execute method to connect to the running instance, ensuring commands run within the same container context.
- Implemented cleanup functionality to stop the persistent instance on cleanup or destruction, improving resource management.
- Updated class documentation to reflect new features and usage of the persistent environment.
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