Move 13 custom agent extension modules from local hermes-agent fork
into timmy-config's sidecar overlay as runtime patches. These files
are deployed into ~/.hermes/hermes-agent/agent/ by deploy.sh.
Files restructured:
- agent/conscience_mapping.py
- agent/evolution/{domain_distiller, self_correction_generator, world_modeler}.py
- agent/fallback_router.py
- agent/gemini_adapter.py
- agent/input_sanitizer.py
- agent/knowledge_ingester.py
- agent/meta_reasoning.py
- agent/nexus_architect.py
- agent/symbolic_memory.py
- agent/temporal_{knowledge_graph,reasoning}.py
This clears the way to reset hermes-agent to pure upstream.
Closes#339
