fix: dashboard bugs and clean up build artifacts (#145)

* chore: stop tracking runtime-generated self-modify reports

These 65 files in data/self_modify_reports/ are auto-generated at
runtime and already listed in .gitignore. Tracking them caused
conflicts when pulling from main.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

* fix: resolve 8 dashboard bugs from Round 4 testing report

- Fix Ollama timeout regression: request_timeout → timeout (agno API)
- Add Bootstrap JS to base.html (fixes creative UI tab switching)
- Send initial_state on Swarm Live WebSocket connect
- Add /api/queue/status endpoint (stops 404 log spam from chat panel)
- Populate agent tools from registry on /tools page
- Add notification bell dropdown with /api/notifications endpoint
- All 1157 tests pass

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

---------

Co-authored-by: Trip T <trip@local>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>

src/timmy/agents/base.py

@@ -63,7 +63,7 @@ class BaseAgent(ABC):
         
         return Agent(
             name=self.name,
-            model=Ollama(id=settings.ollama_model, host=settings.ollama_url, request_timeout=300),
+            model=Ollama(id=settings.ollama_model, host=settings.ollama_url, timeout=300),
             description=system_prompt,
             tools=tool_instances if tool_instances else None,
             add_history_to_context=True,