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GENOME.md
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GENOME.md
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# GENOME.md — compounding-intelligence
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*Auto-generated codebase genome. See timmy-home#676.*
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---
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## Project Overview
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**What:** A system that turns 1B+ daily agent tokens into durable, compounding fleet intelligence.
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**Why:** Every agent session starts at zero. The same mistakes get made repeatedly — the same HTTP 405 is rediscovered as a branch protection issue, the same token path is searched for from scratch. Intelligence evaporates when the session ends.
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**How:** Three pipelines form a compounding loop:
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```
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SESSION ENDS → HARVESTER → KNOWLEDGE STORE → BOOTSTRAPPER → NEW SESSION STARTS SMARTER
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↓
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MEASURER → Prove it's working
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```
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**Status:** Early stage. Template and test scaffolding exist. Core pipeline scripts (harvester.py, bootstrapper.py, measurer.py, session_reader.py) are planned but not yet implemented. The knowledge extraction prompt is complete and validated.
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---
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## Architecture
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```mermaid
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graph TD
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A[Session Transcript<br/>.jsonl] --> B[Harvester]
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B --> C{Extract Knowledge}
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C --> D[knowledge/index.json]
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C --> E[knowledge/global/*.md]
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C --> F[knowledge/repos/{repo}.md]
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C --> G[knowledge/agents/{agent}.md]
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D --> H[Bootstrapper]
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H --> I[Bootstrap Context<br/>2k token injection]
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I --> J[New Session<br/>starts smarter]
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J --> A
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D --> K[Measurer]
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K --> L[metrics/dashboard.md]
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K --> M[Velocity / Hit Rate<br/>Error Reduction]
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```
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### Pipeline 1: Harvester
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**Status:** Prompt designed. Script not implemented.
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Reads finished session transcripts (JSONL). Uses `templates/harvest-prompt.md` to extract durable knowledge into five categories:
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| Category | Description | Example |
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|----------|-------------|---------|
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| `fact` | Concrete, verifiable information | "Repository X has 5 files" |
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| `pitfall` | Errors encountered, wrong assumptions | "Token is at ~/.config/gitea/token, not env var" |
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| `pattern` | Successful action sequences | "Deploy: test → build → push → webhook" |
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| `tool-quirk` | Environment-specific behaviors | "URL format requires trailing slash" |
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| `question` | Identified but unanswered | "Need optimal batch size for harvesting" |
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Output schema per knowledge item:
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```json
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{
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"fact": "One sentence description",
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"category": "fact|pitfall|pattern|tool-quirk|question",
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"repo": "repo-name or 'global'",
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"confidence": 0.0-1.0
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}
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```
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### Pipeline 2: Bootstrapper
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**Status:** Not implemented.
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Queries knowledge store before session start. Assembles a compact 2k-token context from relevant facts. Injects into session startup so the agent begins with full situational awareness.
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### Pipeline 3: Measurer
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**Status:** Not implemented.
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Tracks compounding metrics: knowledge velocity (facts/day), error reduction (%), hit rate (knowledge used / knowledge available), task completion improvement.
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---
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## Directory Structure
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```
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compounding-intelligence/
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├── README.md # Project overview and architecture
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├── GENOME.md # This file (codebase genome)
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├── knowledge/ # [PLANNED] Knowledge store
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│ ├── index.json # Machine-readable fact index
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│ ├── global/ # Cross-repo knowledge
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│ ├── repos/{repo}.md # Per-repo knowledge
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│ └── agents/{agent}.md # Agent-type notes
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├── scripts/
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│ ├── test_harvest_prompt.py # Basic prompt validation (2.5KB)
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│ └── test_harvest_prompt_comprehensive.py # Full prompt structure test (6.8KB)
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├── templates/
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│ └── harvest-prompt.md # Knowledge extraction prompt (3.5KB)
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├── test_sessions/
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│ ├── session_success.jsonl # Happy path test data
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│ ├── session_failure.jsonl # Failure path test data
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│ ├── session_partial.jsonl # Incomplete session test data
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│ ├── session_patterns.jsonl # Pattern extraction test data
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│ └── session_questions.jsonl # Question identification test data
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└── metrics/ # [PLANNED] Compounding metrics
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└── dashboard.md
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```
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---
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## Entry Points and Data Flow
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### Entry Point 1: Knowledge Extraction (Harvester)
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```
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Input: Session transcript (JSONL)
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↓
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templates/harvest-prompt.md (LLM prompt)
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↓
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Knowledge items (JSON array)
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↓
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Output: knowledge/index.json + per-repo/per-agent markdown files
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```
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### Entry Point 2: Session Bootstrap (Bootstrapper)
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```
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Input: Session context (repo, agent type, task type)
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↓
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knowledge/index.json (query relevant facts)
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↓
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2k-token bootstrap context
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↓
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Output: Injected into session startup
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```
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### Entry Point 3: Measurement (Measurer)
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```
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Input: knowledge/index.json + session history
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↓
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Velocity, hit rate, error reduction calculations
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↓
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Output: metrics/dashboard.md
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```
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---
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## Key Abstractions
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### Knowledge Item
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The atomic unit. One sentence, one category, one confidence score. Designed to be small enough that 1000 items fit in a 2k-token bootstrap context.
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### Knowledge Store
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A directory structure that mirrors the fleet's mental model:
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- `global/` — knowledge that applies everywhere (tool quirks, environment facts)
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- `repos/` — knowledge specific to each repo
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- `agents/` — knowledge specific to each agent type
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### Confidence Score
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0.0–1.0 scale. Defines how certain the harvester is about each extracted fact:
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- 0.9–1.0: Explicitly stated with verification
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- 0.7–0.8: Clearly implied by multiple data points
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- 0.5–0.6: Suggested but not fully verified
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- 0.3–0.4: Inferred from limited data
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- 0.1–0.2: Speculative or uncertain
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### Bootstrap Context
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The 2k-token injection that a new session receives. Assembled from the most relevant knowledge items for the current task, filtered by confidence > 0.7, deduplicated, and compressed.
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---
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## API Surface
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### Internal (scripts not yet implemented)
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| Script | Input | Output | Status |
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|--------|-------|--------|--------|
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| `harvester.py` | Session JSONL path | Knowledge items JSON | PLANNED |
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| `bootstrapper.py` | Repo + agent type | 2k-token context string | PLANNED |
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| `measurer.py` | Knowledge store path | Metrics JSON | PLANNED |
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| `session_reader.py` | Session JSONL path | Parsed transcript | PLANNED |
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### Prompt (templates/harvest-prompt.md)
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The extraction prompt is the core "API." It takes a session transcript and returns structured JSON. It defines:
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- Five extraction categories
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- Output format (JSON array of knowledge items)
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- Confidence scoring rubric
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- Constraints (no hallucination, specificity, relevance, brevity)
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- Example input/output pair
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---
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## Test Coverage
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### What Exists
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| File | Tests | Coverage |
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|------|-------|----------|
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| `scripts/test_harvest_prompt.py` | 2 tests | Prompt file existence, sample transcript |
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| `scripts/test_harvest_prompt_comprehensive.py` | 5 tests | Prompt structure, categories, fields, confidence scoring, size limits |
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| `test_sessions/*.jsonl` | 5 sessions | Success, failure, partial, patterns, questions |
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### What's Missing
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1. **Harvester integration test** — Does the prompt actually extract correct knowledge from real transcripts?
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2. **Bootstrapper test** — Does it assemble relevant context correctly?
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3. **Knowledge store test** — Does the index.json maintain consistency?
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4. **Confidence calibration test** — Do high-confidence facts actually prove true in later sessions?
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5. **Deduplication test** — Are duplicate facts across sessions handled?
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6. **Staleness test** — How does the system handle outdated knowledge?
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---
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## Security Considerations
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1. **No secrets in knowledge store** — The harvester must filter out API keys, tokens, and credentials from extracted facts. The prompt constraints mention this but there is no automated guard.
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2. **Knowledge poisoning** — A malicious or corrupted session could inject false facts. Confidence scoring partially mitigates this, but there is no verification step.
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3. **Access control** — The knowledge store has no access control. Any process that can read the directory can read all facts. In a multi-tenant setup, this is a concern.
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4. **Transcript privacy** — Session transcripts may contain user data. The harvester must not extract personally identifiable information into the knowledge store.
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---
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## The 100x Path (from README)
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```
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Month 1: 15,000 facts, sessions 20% faster
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Month 2: 45,000 facts, sessions 40% faster, first-try success up 30%
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Month 3: 90,000 facts, fleet measurably smarter per token
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```
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Each new session is better than the last. The intelligence compounds.
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---
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*Generated by codebase-genome pipeline. Ref: timmy-home#676.*
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353
scripts/sampler.py
Normal file
353
scripts/sampler.py
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#!/usr/bin/env python3
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"""
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sampler.py — Score and rank sessions by harvest value.
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With 20k+ sessions on disk, we can't harvest all at once. This script
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scores each session by how likely it is to contain valuable knowledge,
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so the harvester processes the best ones first.
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Scoring strategy:
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- Recency: last 7d=3pts, last 30d=2pts, older=1pt
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- Length: >50 messages=3pts, >20=2pts, <20=1pt
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- Repo uniqueness: first session for a repo=5pts, otherwise=1pt
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- Outcome: failure=3pts (most to learn), success=2pts, unknown=1pt
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- Tool calls: >10 tool invocations=2pts (complex sessions)
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Usage:
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python3 sampler.py --count 100 # Top 100 sessions
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python3 sampler.py --repo the-nexus --count 20 # Top 20 for a repo
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python3 sampler.py --since 2026-04-01 # All sessions since date
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python3 sampler.py --count 50 --min-score 8 # Only high-value sessions
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python3 sampler.py --count 100 --output sample.json # Save to file
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"""
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import argparse
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import json
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import os
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import sys
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import time
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from datetime import datetime, timedelta, timezone
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from pathlib import Path
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from typing import Optional
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# --- Fast session scanning (no full parse) ---
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def scan_session_fast(path: str) -> dict:
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"""Extract scoring metadata from a session without parsing the full JSONL.
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Reads only: first line, last ~20 lines, and line count. This processes
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20k sessions in seconds instead of minutes.
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"""
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meta = {
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'path': path,
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'message_count': 0,
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'has_tool_calls': False,
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'tool_call_count': 0,
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'first_timestamp': '',
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'last_timestamp': '',
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'is_failure': False,
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'repos_mentioned': set(),
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'first_role': '',
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'last_content_preview': '',
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}
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try:
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file_size = os.path.getsize(path)
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if file_size == 0:
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return meta
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with open(path, 'r', encoding='utf-8', errors='replace') as f:
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# Read first line for timestamp + role
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first_line = f.readline().strip()
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if first_line:
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try:
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first_msg = json.loads(first_line)
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meta['first_timestamp'] = first_msg.get('timestamp', '')
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meta['first_role'] = first_msg.get('role', '')
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except json.JSONDecodeError:
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pass
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# Fast line count + collect tail lines
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# For the tail, seek to near end of file
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tail_lines = []
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line_count = 1 # already read first
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if file_size > 8192:
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# Seek to last 8KB for tail sampling
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f.seek(max(0, file_size - 8192))
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f.readline() # skip partial line
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for line in f:
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line = line.strip()
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if line:
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tail_lines.append(line)
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line_count += 1
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# We lost the exact count for big files — estimate from file size
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# Average JSONL line is ~500 bytes
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if line_count < 100:
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line_count = max(line_count, file_size // 500)
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else:
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# Small file — read all
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for line in f:
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line = line.strip()
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if line:
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tail_lines.append(line)
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line_count += 1
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meta['message_count'] = line_count
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# Parse tail lines for outcome, tool calls, repos
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for line in tail_lines[-30:]: # last 30 non-empty lines
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try:
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msg = json.loads(line)
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# Track last timestamp
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ts = msg.get('timestamp', '')
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if ts:
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meta['last_timestamp'] = ts
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# Count tool calls
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if msg.get('tool_calls'):
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meta['has_tool_calls'] = True
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meta['tool_call_count'] += len(msg['tool_calls'])
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# Detect failure signals in content
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content = ''
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if isinstance(msg.get('content'), str):
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content = msg['content'].lower()
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elif isinstance(msg.get('content'), list):
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for part in msg['content']:
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if isinstance(part, dict) and part.get('type') == 'text':
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content += part.get('text', '').lower()
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if content:
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meta['last_content_preview'] = content[:200]
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failure_signals = ['error', 'failed', 'cannot', 'unable',
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'exception', 'traceback', 'rejected', 'denied']
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if any(sig in content for sig in failure_signals):
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meta['is_failure'] = True
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# Extract repo references from tool call arguments
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if msg.get('tool_calls'):
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for tc in msg['tool_calls']:
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args = tc.get('function', {}).get('arguments', '')
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if isinstance(args, str):
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# Look for repo patterns
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for pattern in ['Timmy_Foundation/', 'Rockachopa/', 'compounding-intelligence', 'the-nexus', 'timmy-home', 'hermes-agent', 'the-beacon', 'the-door']:
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if pattern in args:
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repo = pattern.rstrip('/')
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meta['repos_mentioned'].add(repo)
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||||
|
||||
except json.JSONDecodeError:
|
||||
continue
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||||
|
||||
except (IOError, OSError):
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pass
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meta['repos_mentioned'] = list(meta['repos_mentioned'])
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return meta
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||||
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# --- Filename timestamp parsing ---
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||||
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||||
def parse_session_timestamp(filename: str) -> Optional[datetime]:
|
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"""Parse timestamp from session filename.
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||||
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||||
Common formats:
|
||||
session_20260413_123456_hash.jsonl
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||||
20260413_123456_hash.jsonl
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||||
"""
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||||
stem = Path(filename).stem
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||||
parts = stem.split('_')
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||||
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||||
# Try session_YYYYMMDD_HHMMSS format
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||||
for i, part in enumerate(parts):
|
||||
if len(part) == 8 and part.isdigit():
|
||||
date_part = part
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||||
time_part = parts[i + 1] if i + 1 < len(parts) and len(parts[i + 1]) == 6 else '000000'
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||||
try:
|
||||
return datetime.strptime(f"{date_part}_{time_part}", '%Y%m%d_%H%M%S').replace(tzinfo=timezone.utc)
|
||||
except ValueError:
|
||||
continue
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||||
|
||||
# Fallback: use file modification time
|
||||
return None
|
||||
|
||||
|
||||
# --- Scoring ---
|
||||
|
||||
def score_session(meta: dict, now: datetime, seen_repos: set) -> tuple[int, dict]:
|
||||
"""Score a session for harvest value. Returns (score, breakdown)."""
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||||
score = 0
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||||
breakdown = {}
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||||
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||||
# 1. Recency
|
||||
ts = parse_session_timestamp(os.path.basename(meta['path']))
|
||||
if ts is None:
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||||
# Fallback to mtime
|
||||
try:
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||||
ts = datetime.fromtimestamp(os.path.getmtime(meta['path']), tz=timezone.utc)
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||||
except OSError:
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||||
ts = now - timedelta(days=365)
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||||
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||||
age_days = (now - ts).days
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||||
if age_days <= 7:
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||||
recency = 3
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||||
elif age_days <= 30:
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||||
recency = 2
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||||
else:
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||||
recency = 1
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||||
score += recency
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||||
breakdown['recency'] = recency
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||||
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||||
# 2. Length
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||||
count = meta['message_count']
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||||
if count > 50:
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||||
length = 3
|
||||
elif count > 20:
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||||
length = 2
|
||||
else:
|
||||
length = 1
|
||||
score += length
|
||||
breakdown['length'] = length
|
||||
|
||||
# 3. Repo uniqueness (first session mentioning a repo gets bonus)
|
||||
repo_score = 0
|
||||
for repo in meta.get('repos_mentioned', []):
|
||||
if repo not in seen_repos:
|
||||
seen_repos.add(repo)
|
||||
repo_score = max(repo_score, 5)
|
||||
else:
|
||||
repo_score = max(repo_score, 1)
|
||||
score += repo_score
|
||||
breakdown['repo_unique'] = repo_score
|
||||
|
||||
# 4. Outcome
|
||||
if meta.get('is_failure'):
|
||||
outcome = 3
|
||||
elif meta.get('last_content_preview', '').strip():
|
||||
outcome = 2 # has some content = likely completed
|
||||
else:
|
||||
outcome = 1
|
||||
score += outcome
|
||||
breakdown['outcome'] = outcome
|
||||
|
||||
# 5. Tool calls
|
||||
if meta.get('tool_call_count', 0) > 10:
|
||||
tool = 2
|
||||
else:
|
||||
tool = 0
|
||||
score += tool
|
||||
breakdown['tool_calls'] = tool
|
||||
|
||||
return score, breakdown
|
||||
|
||||
|
||||
# --- Main ---
|
||||
|
||||
def main():
|
||||
parser = argparse.ArgumentParser(description="Score and rank sessions for harvesting")
|
||||
parser.add_argument('--sessions-dir', default=os.path.expanduser('~/.hermes/sessions'),
|
||||
help='Directory containing session files')
|
||||
parser.add_argument('--count', type=int, default=100, help='Number of top sessions to return')
|
||||
parser.add_argument('--repo', default='', help='Filter to sessions mentioning this repo')
|
||||
parser.add_argument('--since', default='', help='Only score sessions after this date (YYYY-MM-DD)')
|
||||
parser.add_argument('--min-score', type=int, default=0, help='Minimum score threshold')
|
||||
parser.add_argument('--output', default='', help='Output file (JSON). Default: stdout')
|
||||
parser.add_argument('--format', choices=['json', 'paths', 'table'], default='table',
|
||||
help='Output format: json (full), paths (one per line), table (human)')
|
||||
parser.add_argument('--top-percent', type=float, default=0, help='Return top N%% instead of --count')
|
||||
|
||||
args = parser.parse_args()
|
||||
|
||||
sessions_dir = Path(args.sessions_dir)
|
||||
if not sessions_dir.is_dir():
|
||||
print(f"ERROR: Sessions directory not found: {sessions_dir}", file=sys.stderr)
|
||||
sys.exit(1)
|
||||
|
||||
# Find all JSONL files
|
||||
print(f"Scanning {sessions_dir}...", file=sys.stderr)
|
||||
t0 = time.time()
|
||||
|
||||
session_files = list(sessions_dir.glob('*.jsonl'))
|
||||
total = len(session_files)
|
||||
print(f"Found {total} session files", file=sys.stderr)
|
||||
|
||||
# Parse since date
|
||||
since_dt = None
|
||||
if args.since:
|
||||
since_dt = datetime.strptime(args.since, '%Y-%m-%d').replace(tzinfo=timezone.utc)
|
||||
|
||||
# Score all sessions
|
||||
now = datetime.now(timezone.utc)
|
||||
seen_repos = set() # Track repos for uniqueness scoring
|
||||
scored = []
|
||||
|
||||
for i, sf in enumerate(session_files):
|
||||
# Date filter (fast path: check filename first)
|
||||
if since_dt:
|
||||
ts = parse_session_timestamp(sf.name)
|
||||
if ts and ts < since_dt:
|
||||
continue
|
||||
|
||||
meta = scan_session_fast(str(sf))
|
||||
|
||||
# Repo filter
|
||||
if args.repo:
|
||||
repos = meta.get('repos_mentioned', [])
|
||||
if args.repo.lower() not in [r.lower() for r in repos]:
|
||||
# Also check filename
|
||||
if args.repo.lower() not in sf.name.lower():
|
||||
continue
|
||||
|
||||
score, breakdown = score_session(meta, now, seen_repos)
|
||||
|
||||
if score >= args.min_score:
|
||||
scored.append({
|
||||
'path': str(sf),
|
||||
'filename': sf.name,
|
||||
'score': score,
|
||||
'breakdown': breakdown,
|
||||
'message_count': meta['message_count'],
|
||||
'repos': meta['repos_mentioned'],
|
||||
'is_failure': meta['is_failure'],
|
||||
})
|
||||
|
||||
if (i + 1) % 5000 == 0:
|
||||
elapsed = time.time() - t0
|
||||
print(f" Scanned {i + 1}/{total} ({elapsed:.1f}s)", file=sys.stderr)
|
||||
|
||||
elapsed = time.time() - t0
|
||||
print(f"Scored {len(scored)} sessions in {elapsed:.1f}s", file=sys.stderr)
|
||||
|
||||
# Sort by score descending
|
||||
scored.sort(key=lambda x: x['score'], reverse=True)
|
||||
|
||||
# Apply count or percent
|
||||
if args.top_percent > 0:
|
||||
count = max(1, int(len(scored) * args.top_percent / 100))
|
||||
else:
|
||||
count = args.count
|
||||
scored = scored[:count]
|
||||
|
||||
# Output
|
||||
if args.output:
|
||||
with open(args.output, 'w', encoding='utf-8') as f:
|
||||
json.dump(scored, f, indent=2)
|
||||
print(f"Wrote {len(scored)} sessions to {args.output}", file=sys.stderr)
|
||||
elif args.format == 'json':
|
||||
json.dump(scored, sys.stdout, indent=2)
|
||||
elif args.format == 'paths':
|
||||
for s in scored:
|
||||
print(s['path'])
|
||||
else: # table
|
||||
print(f"{'SCORE':>5} {'MSGS':>5} {'REPOS':<25} {'FILE'}")
|
||||
print(f"{'-'*5} {'-'*5} {'-'*25} {'-'*40}")
|
||||
for s in scored:
|
||||
repos = ', '.join(s['repos'][:2]) if s['repos'] else '-'
|
||||
fail = ' FAIL' if s['is_failure'] else ''
|
||||
print(f"{s['score']:>5} {s['message_count']:>5} {repos:<25} {s['filename'][:40]}{fail}")
|
||||
|
||||
|
||||
if __name__ == '__main__':
|
||||
main()
|
||||
Reference in New Issue
Block a user