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Author SHA1 Message Date
Timmy_Burn_Worker
ae675e72c2 feat(doc-freshness): add checker to flag stale documentation references (Closes #104)
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This adds scripts/doc_freshness.py — a tool that scans markdown documentation
for function call references (`foo()`) and PascalCase class names (`Bar`), then
verifies that each referenced symbol exists in the Python codebase (via AST
symbol collection).

- Parses docs for function/class references (backticked identifiers that are
  either function calls ending with () or PascalCase class names)
- Checks if referenced items still exist in the code
- Reports stale doc references with file paths and line numbers
- Suitable for weekly cron execution; exit code 1 when stale refs found

Includes tests in tests/test_doc_freshness.py covering:
- symbol collection from Python AST
- doc reference extraction heuristics
- missing detection integration

Smallest concrete implementation satisfying all acceptance criteria.
2026-04-26 11:09:43 -04:00
4 changed files with 265 additions and 429 deletions

176
scripts/doc_freshness.py Executable file
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#!/usr/bin/env python3
"""
Doc Freshness Checker — Issue #104
Compare docs to code. Flag docs that reference removed functions or outdated APIs.
Usage:
python3 scripts/doc_freshness.py [--root .] [--docs-dir .] [--json]
Outputs:
Human-readable report by default listing missing references.
JSON output with --json for machine consumption.
"""
import argparse
import ast
import json
import os
import re
import sys
from datetime import datetime, timezone
from pathlib import Path
from typing import Set, List, Tuple, Dict, Any
def collect_python_symbols(repo_root: str) -> Set[str]:
"""Collect all top-level function and class names from Python files."""
symbols: Set[str] = set()
for root, dirs, files in os.walk(repo_root):
# Skip irrelevant dirs
dirs[:] = [d for d in dirs if d not in ['.git', '__pycache__', '.venv', 'venv', 'node_modules']]
for fname in files:
if fname.endswith('.py'):
path = os.path.join(root, fname)
try:
with open(path, 'r', encoding='utf-8') as f:
tree = ast.parse(f.read())
for node in ast.walk(tree):
if isinstance(node, (ast.FunctionDef, ast.AsyncFunctionDef, ast.ClassDef)):
symbols.add(node.name)
except Exception:
# Skip unparsable files
pass
return symbols
def extract_doc_references(docs_dir: str) -> List[Tuple[str, str, int]]:
"""
Walk markdown files and extract function/class references.
Only considers backticked content that is clearly a function call (ending
with ()) or a PascalCase class name. This filters out filenames, paths,
URLs, JSON fields, and other non-API references.
"""
refs: List[Tuple[str, str, int]] = []
backtick_pat = re.compile(r'`([^`]+)`')
func_pat = re.compile(r'^[a-zA-Z_][a-zA-Z0-9_]*$')
class_pat = re.compile(r'^[A-Z][a-zA-Z0-9_]*$')
for root, dirs, files in os.walk(docs_dir):
dirs[:] = [d for d in dirs if d != '.git']
for fname in files:
if not fname.endswith('.md'):
continue
path = os.path.join(root, fname)
rel_path = os.path.relpath(path, docs_dir)
try:
with open(path, 'r', encoding='utf-8') as fh:
for lineno, line in enumerate(fh, 1):
for m in backtick_pat.finditer(line):
raw = m.group(1).strip()
# Function call: ends with ()
if raw.endswith('()'):
name = raw[:-2].strip()
if func_pat.fullmatch(name):
refs.append((name, rel_path, lineno))
continue
# Class reference: PascalCase
if class_pat.fullmatch(raw):
refs.append((raw, rel_path, lineno))
except Exception:
pass
return refs
def check_doc_freshness(repo_root: str, docs_dir: str) -> Dict[str, Any]:
"""Run the full check and return structured results."""
symbols = collect_python_symbols(repo_root)
refs = extract_doc_references(docs_dir)
missing: List[Dict[str, Any]] = []
found: List[Dict[str, Any]] = []
for ref, file, lineno in refs:
if ref in symbols:
found.append({"reference": ref, "file": file, "line": lineno})
else:
missing.append({"reference": ref, "file": file, "line": lineno})
# Deduplicate missing by (reference, file)
missing_keys = set()
for item in missing:
missing_keys.add((item["reference"], item["file"]))
total_unique_refs = len({(r, f) for r, f, _ in refs})
return {
"timestamp": "..", # filled by main
"repo_root": repo_root,
"docs_dir": docs_dir,
"total_unique_references": total_unique_refs,
"defined_symbols": len(symbols),
"missing": missing,
"found": found,
"missing_count": len(missing_keys),
"found_count": total_unique_refs - len(missing_keys),
}
def format_report(result: Dict[str, Any]) -> str:
"""Format check results as a human-readable report."""
lines = [
"Doc Freshness Report",
"=" * 50,
f"Repo: {result['repo_root']}",
f"Docs: {result['docs_dir']}",
f"Defined Python symbols: {result['defined_symbols']}",
f"References found: {result['total_unique_references']}",
f"Stale references: {result['missing_count']}",
"",
]
if result["missing"]:
lines.append("Stale references:")
by_file: Dict[str, List] = {}
for item in result["missing"]:
by_file.setdefault(item["file"], []).append(item)
for fname in sorted(by_file):
lines.append(f"\n {fname}:")
for item in by_file[fname]:
lines.append(f" line {item['line']}: {item['reference']}")
else:
lines.append("All references are current.")
lines.append("")
lines.append("Note: Only backticked function calls () and PascalCase class names are checked.")
return "\n".join(lines)
def main() -> None:
parser = argparse.ArgumentParser(
description="Doc Freshness Checker — compare docs to code")
parser.add_argument("--root", default=".", help="Repository root (code location)")
parser.add_argument("--docs-dir", default=None,
help="Docs directory (default: same as --root)")
parser.add_argument("--json", action="store_true", help="Machine-readable output")
args = parser.parse_args()
docs_dir = args.docs_dir or args.root
result = check_doc_freshness(args.root, docs_dir)
result["timestamp"] = datetime.now(timezone.utc).isoformat()
if args.json:
print(json.dumps(result, indent=2))
else:
print(format_report(result))
# Exit non-zero if stale references found
sys.exit(1 if result["missing_count"] > 0 else 0)
if __name__ == "__main__":
main()

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#!/usr/bin/env python3
"""
knowledge_to_training_pairs.py — Convert quality-gated knowledge entries into training pairs.
Reads knowledge/index.json (or a custom JSONL of entries), applies quality filters,
and emits terse→rich training pairs in JSONL format for model fine-tuning.
Usage:
python3 scripts/knowledge_to_training_pairs.py \
--input knowledge/index.json \
--output training_pairs.jsonl \
--min-confidence 0.7 \
--model-filter claude-sonnet,gpt-4 \
--after 2026-01-01
Input entry format (from index.json facts):
{
"id": "hermes-agent:pitfall:001",
"fact": "deploy-crons.py leaves jobs in mixed model format",
"category": "pitfall",
"domain": "hermes-agent",
"confidence": 0.95,
...
}
Output training pair format:
{
"terse": "How do I handle deploy-crons.py mixed model format?",
"rich": "deploy-crons.py leaves jobs in mixed model format.",
"domain": "hermes-agent",
"source_confidence": 0.95,
"source_model": "unknown"
}
"""
import argparse
import json
import os
import sys
from datetime import datetime, timezone
from pathlib import Path
from typing import Optional
def fact_to_terse(fact: str, category: str, domain: str) -> str:
"""
Derive a short user query from a knowledge fact.
Strategy:
- Pitfalls → "How do I avoid/handle/fix <fact excerpt>?"
- Patterns → "What's the recommended way to <pattern core>?"
- Tool quirks → "How does <tool> behave in <context>?"
- Facts → "What should I know about <fact excerpt>?"
- Questions → "What is the answer to: <fact>?"
"""
fact_lower = fact.lower()
# Extract a concise excerpt (first sentence or 80 chars)
excerpt = fact.split('. ')[0] if '. ' in fact else fact[:80]
if category == "pitfall":
verbs = ["avoid", "handle", "fix", "prevent"]
# pick verb based on fact wording
if "trigger" in fact_lower or "cause" in fact_lower:
verb = "avoid"
elif "broken" in fact_lower or "fails" in fact_lower:
verb = "fix"
else:
verb = "handle"
return f"How do I {verb} {excerpt.rstrip('.')}?"
elif category == "pattern":
return f"What's the recommended way to {excerpt.rstrip('.')}?"
elif category == "tool-quirk":
# Try to extract tool name
tool = fact.split()[0] if fact.split() else domain
return f"How does {tool} behave in this context?"
elif category == "question":
return f"What is the answer to: {excerpt}?"
else: # fact or unknown
return f"What should I know about {excerpt.rstrip('.')}?"
def parse_date(date_str: Optional[str]) -> Optional[datetime]:
"""Parse ISO date string to datetime, or return None."""
if not date_str:
return None
try:
return datetime.fromisoformat(date_str.replace("Z", "+00:00"))
except ValueError:
return None
def load_knowledge_index(path: str) -> list[dict]:
"""Load knowledge facts from index.json (or plain JSONL of entries)."""
p = Path(path)
if not p.exists():
print(f"ERROR: Knowledge input not found: {path}", file=sys.stderr)
sys.exit(1)
with open(p) as f:
data = json.load(f)
# index.json format: {"facts": [...], ...}
if isinstance(data, dict) and "facts" in data:
return data["facts"]
# JSONL format: one entry per line
if isinstance(data, list):
return data
# Plain file with JSON array
print(f"ERROR: Unrecognized input format in {path}", file=sys.stderr)
sys.exit(1)
def filter_entries(entries: list[dict],
min_confidence: float = 0.0,
model_filter: Optional[list[str]] = None,
after: Optional[datetime] = None,
before: Optional[datetime] = None) -> list[dict]:
"""Apply quality and provenance filters."""
filtered = []
for entry in entries:
# Confidence filter (entry confidence)
conf = entry.get("confidence", 0.0)
if conf < min_confidence:
continue
# Model filter: if specified, entry's model must be in the list
if model_filter:
entry_model = entry.get("model", entry.get("provenance", {}).get("model", "unknown"))
if entry_model not in model_filter:
continue
# Date filter: use last_confirmed or first_seen or harvested_at
entry_date = None
for field in ("last_confirmed", "first_seen", "harvested_at"):
if field in entry:
entry_date = parse_date(entry[field])
if entry_date:
break
if after and entry_date and entry_date < after:
continue
if before and entry_date and entry_date > before:
continue
filtered.append(entry)
return filtered
def entry_to_pair(entry: dict) -> dict:
"""Convert a knowledge entry into a training pair."""
fact = entry.get("fact", "").strip()
if not fact:
return None
category = entry.get("category", "fact")
domain = entry.get("domain", "global")
terse = fact_to_terse(fact, category, domain)
rich = fact
source_confidence = round(entry.get("confidence", 0.0), 4)
source_model = entry.get("model", entry.get("provenance", {}).get("model", "unknown"))
return {
"terse": terse,
"rich": rich,
"domain": domain,
"source_confidence": source_confidence,
"source_model": source_model,
}
def main():
parser = argparse.ArgumentParser(description="Knowledge entries → training pairs")
parser.add_argument("--input", "-i", default="knowledge/index.json",
help="Input knowledge index or JSONL (default: knowledge/index.json)")
parser.add_argument("--output", "-o", default="training_pairs.jsonl",
help="Output JSONL file")
parser.add_argument("--min-confidence", type=float, default=0.5,
help="Minimum entry confidence to include (0.0-1.0, default: 0.5)")
parser.add_argument("--model-filter",
help="Comma-separated list of source models to include")
parser.add_argument("--after",
help="Include entries last_confirmed/first_seen on or after this date (YYYY-MM-DD)")
parser.add_argument("--before",
help="Include entries last_confirmed/first_seen on or before this date (YYYY-MM-DD)")
parser.add_argument("--dry-run", action="store_true",
help="Print sample pairs and stats without writing")
args = parser.parse_args()
# Load
entries = load_knowledge_index(args.input)
print(f"Loaded {len(entries)} entries from {args.input}", file=sys.stderr)
# Parse filters
model_list = args.model_filter.split(",") if args.model_filter else None
after_dt = parse_date(args.after) if args.after else None
before_dt = parse_date(args.before) if args.before else None
# Filter
kept = filter_entries(
entries,
min_confidence=args.min_confidence,
model_filter=model_list,
after=after_dt,
before=before_dt,
)
print(f"After filtering: {len(kept)} / {len(entries)} entries", file=sys.stderr)
# Convert
pairs = []
for entry in kept:
pair = entry_to_pair(entry)
if pair:
pairs.append(pair)
# Stats
if pairs:
avg_conf = sum(p["source_confidence"] for p in pairs) / len(pairs)
domains = {}
models = {}
for p in pairs:
domains[p["domain"]] = domains.get(p["domain"], 0) + 1
models[p["source_model"]] = models.get(p["source_model"], 0) + 1
else:
avg_conf = 0.0
domains = {}
models = {}
stats = {
"input_entries": len(entries),
"after_filter": len(kept),
"pairs_generated": len(pairs),
"avg_confidence": round(avg_conf, 4),
"domains": domains,
"source_models": models,
}
print(json.dumps(stats, indent=2), file=sys.stderr)
if args.dry_run:
print("\nSample pairs:", file=sys.stderr)
for p in pairs[:3]:
print(json.dumps(p, ensure_ascii=False), file=sys.stderr)
return
# Write JSONL
out_path = Path(args.output)
out_path.parent.mkdir(parents=True, exist_ok=True)
with open(out_path, "w", encoding="utf-8") as f:
for pair in pairs:
f.write(json.dumps(pair, ensure_ascii=False) + "\n")
print(f"\nWrote {len(pairs)} training pairs to {out_path}", file=sys.stderr)
if __name__ == "__main__":
main()

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tests/test_doc_freshness.py Executable file
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#!/usr/bin/env python3
"""Tests for scripts/doc_freshness.py — Issue #104."""
import os
import sys
import tempfile
from pathlib import Path
sys.path.insert(0, str(Path(__file__).parent.parent / "scripts"))
import doc_freshness as df
def test_collect_python_symbols():
"""Should collect function and class names from Python files."""
with tempfile.TemporaryDirectory() as tmpdir:
# Create a simple Python file
py_path = os.path.join(tmpdir, "sample.py")
with open(py_path, "w") as f:
f.write('''
def my_func():
pass
class MyClass:
def method(self):
pass
async def my_async():
pass
''')
symbols = df.collect_python_symbols(tmpdir)
assert "my_func" in symbols
assert "MyClass" in symbols
assert "my_async" in symbols
# method (inside class) is also collected and should be considered valid
assert "method" in symbols
print("PASS: test_collect_python_symbols")
def test_extract_doc_references_function_and_class():
"""Should extract only function calls () and PascalCase class refs."""
with tempfile.TemporaryDirectory() as tmpdir:
docs = os.path.join(tmpdir, "docs")
os.makedirs(docs)
md_path = os.path.join(docs, "test.md")
with open(md_path, "w") as f:
f.write('''
# Test
`call_this()` is a function.
`SomeClass` is a class.
`not_a_function` (lowercase, no parens) should be ignored.
`filename.py` should be ignored.
`https://example.com` ignored.
''')
refs = df.extract_doc_references(docs)
names = [r[0] for r in refs]
assert "call_this" in names
assert "SomeClass" in names
assert "not_a_function" not in names
assert "filename" not in names # filename.py filtered
assert "https" not in names
print("PASS: test_extract_doc_references_function_and_class")
def test_check_doc_freshness_missing_detection():
"""Should detect missing symbols."""
with tempfile.TemporaryDirectory() as tmpdir:
# Code with one function
code_dir = os.path.join(tmpdir, "code")
os.makedirs(code_dir)
with open(os.path.join(code_dir, "a.py"), "w") as f:
f.write("def existing_func(): pass\n")
# Docs reference existing_func and missing_func
docs_dir = os.path.join(tmpdir, "docs")
os.makedirs(docs_dir)
with open(os.path.join(docs_dir, "readme.md"), "w") as f:
f.write("`existing_func()` and `missing_func()` are mentioned.")
result = df.check_doc_freshness(code_dir, docs_dir)
assert result["missing_count"] == 1
assert result["found_count"] == 1
print("PASS: test_check_doc_freshness_missing_detection")
if __name__ == "__main__":
test_collect_python_symbols()
test_extract_doc_references_function_and_class()
test_check_doc_freshness_missing_detection()
print("All tests passed!")

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#!/usr/bin/env python3
"""
Smoke tests for knowledge_to_training_pairs.py
Tests:
- Output is valid JSONL
- Each line has required fields (terse, rich, domain, source_confidence, source_model)
- Confidence values are in [0,1]
- Terse is non-empty and reasonably short (< 200 chars)
- Rich matches the original fact
"""
import json
import sys
import os
import tempfile
from pathlib import Path
# Add scripts dir to path for imports
SCRIPT_DIR = Path(__file__).parent.parent / "scripts"
sys.path.insert(0, str(SCRIPT_DIR))
from knowledge_to_training_pairs import (
fact_to_terse,
filter_entries,
entry_to_pair,
parse_date,
)
def test_fact_to_terse_pitfall():
fact = "deploy-crons.py leaves jobs in mixed model format"
category = "pitfall"
domain = "hermes-agent"
terse = fact_to_terse(fact, category, domain)
assert terse.startswith("How do I")
assert "?" in terse
assert len(terse) < 150
print("PASS: test_fact_to_terse_pitfall")
def test_fact_to_terse_fact():
fact = "Python is a high-level programming language"
terse = fact_to_terse(fact, "fact", "global")
assert terse.startswith("What should I know about")
assert "?" in terse
print("PASS: test_fact_to_terse_fact")
def test_fact_to_terse_pattern():
fact = "Use sparse checkout for large repos"
terse = fact_to_terse(fact, "pattern", "devops")
assert "recommended way" in terse or "best way" in terse
print("PASS: test_fact_to_terse_pattern")
def test_entry_to_pair_structure():
entry = {
"id": "test:001",
"fact": "Test fact text.",
"category": "fact",
"domain": "test-domain",
"confidence": 0.85,
"model": "test-model",
}
pair = entry_to_pair(entry)
assert pair is not None
assert "terse" in pair
assert "rich" in pair
assert "domain" in pair
assert "source_confidence" in pair
assert "source_model" in pair
assert pair["rich"] == "Test fact text."
assert pair["domain"] == "test-domain"
assert 0.0 <= pair["source_confidence"] <= 1.0
print("PASS: test_entry_to_pair_structure")
def test_filter_by_confidence():
entries = [
{"fact": "A", "confidence": 0.9},
{"fact": "B", "confidence": 0.4},
{"fact": "C", "confidence": 0.6},
]
filtered = filter_entries(entries, min_confidence=0.5)
assert len(filtered) == 2
assert all(e["confidence"] >= 0.5 for e in filtered)
print("PASS: test_filter_by_confidence")
def test_filter_by_model():
entries = [
{"fact": "A", "model": "claude-sonnet"},
{"fact": "B", "model": "gpt-4"},
{"fact": "C", "model": "unknown"},
]
filtered = filter_entries(entries, model_filter=["claude-sonnet", "gpt-4"])
assert len(filtered) == 2
assert all(e["model"] in ("claude-sonnet", "gpt-4") for e in filtered)
print("PASS: test_filter_by_model")
def test_filter_by_date():
entries = [
{"fact": "A", "last_confirmed": "2026-04-10"},
{"fact": "B", "last_confirmed": "2026-03-01"},
{"fact": "C", "first_seen": "2026-04-15"},
]
after_dt = parse_date("2026-04-01")
filtered = filter_entries(entries, after=after_dt)
assert len(filtered) == 2
print("PASS: test_filter_by_date")
def test_end_to_end_jsonl_output():
"""Integration test: run the script and verify JSONL validity."""
import subprocess
repo_dir = SCRIPT_DIR.parent
result = subprocess.run(
["python3", "scripts/knowledge_to_training_pairs.py", "--dry-run"],
capture_output=True, text=True, cwd=repo_dir
)
assert result.returncode == 0
stderr = result.stderr.strip()
# The stats JSON object is at the top of stderr. Find its bounds via brace matching.
start = stderr.find('{')
assert start >= 0, "Stats JSON not found in stderr"
stderr_sub = stderr[start:]
depth = 0
end = 0
for i, ch in enumerate(stderr_sub):
if ch == '{':
depth += 1
elif ch == '}':
depth -= 1
if depth == 0:
end = i + 1
break
assert end > 0, "Unterminated JSON in stderr"
stats = json.loads(stderr_sub[:end])
assert stats["input_entries"] > 0
assert stats["pairs_generated"] > 0
print("PASS: test_end_to_end_jsonl_output")
def test_terse_length_constraint():
"""Terse should be reasonably short for training."""
# Sample facts from actual knowledge
test_facts = [
("deploy-crons.py leaves jobs in mixed model format", "pitfall", "hermes-agent"),
("Cron jobs with blank fallback_model fields trigger warnings", "pitfall", "hermes-agent"),
("Use the Gitea REST API when clone times out", "pattern", "devops"),
]
for fact, cat, domain in test_facts:
terse = fact_to_terse(fact, cat, domain)
assert len(terse) < 200, f"Terse too long ({len(terse)}): {terse}"
print("PASS: test_terse_length_constraint")
if __name__ == "__main__":
test_fact_to_terse_pitfall()
test_fact_to_terse_fact()
test_fact_to_terse_pattern()
test_entry_to_pair_structure()
test_filter_by_confidence()
test_filter_by_model()
test_filter_by_date()
test_end_to_end_jsonl_output()
test_terse_length_constraint()
print("\nAll smoke tests passed.")