feat(tools): add persistent shell mode to local and SSH backends

Cherry-picked from PR #1067 by alt-glitch.
Adds PersistentShellMixin with file-based IPC protocol for long-lived
bash shells. LocalEnvironment and SSHEnvironment gain persistent=True
option. Controlled via TERMINAL_LOCAL_PERSISTENT / TERMINAL_SSH_PERSISTENT
env vars. Fixes latent stderr pipe buffer deadlock.

Co-authored-by: alt-glitch <balyan.sid@gmail.com>

tests/tools/test_local_env_blocklist.py

@@ -26,8 +26,7 @@ def _make_fake_popen(captured: dict):
         proc = MagicMock()
         proc.poll.return_value = 0
         proc.returncode = 0
-        proc.stdout = iter([])
-        proc.stdout.close = lambda: None
+        proc.stdout = MagicMock(__iter__=lambda s: iter([]), __next__=lambda s: (_ for _ in ()).throw(StopIteration))
         proc.stdin = MagicMock()
         return proc
     return fake_popen

tests/tools/test_local_persistent.py

@@ -0,0 +1,152 @@
+"""Tests for the local persistent shell backend."""
+
+import glob as glob_mod
+
+import pytest
+
+from tools.environments.local import LocalEnvironment
+from tools.environments.persistent_shell import PersistentShellMixin
+
+
+class TestLocalConfig:
+    def test_local_persistent_default_false(self, monkeypatch):
+        monkeypatch.delenv("TERMINAL_LOCAL_PERSISTENT", raising=False)
+        from tools.terminal_tool import _get_env_config
+        assert _get_env_config()["local_persistent"] is False
+
+    def test_local_persistent_true(self, monkeypatch):
+        monkeypatch.setenv("TERMINAL_LOCAL_PERSISTENT", "true")
+        from tools.terminal_tool import _get_env_config
+        assert _get_env_config()["local_persistent"] is True
+
+    def test_local_persistent_yes(self, monkeypatch):
+        monkeypatch.setenv("TERMINAL_LOCAL_PERSISTENT", "yes")
+        from tools.terminal_tool import _get_env_config
+        assert _get_env_config()["local_persistent"] is True
+
+
+class TestMergeOutput:
+    def test_stdout_only(self):
+        assert PersistentShellMixin._merge_output("out", "") == "out"
+
+    def test_stderr_only(self):
+        assert PersistentShellMixin._merge_output("", "err") == "err"
+
+    def test_both(self):
+        assert PersistentShellMixin._merge_output("out", "err") == "out\nerr"
+
+    def test_empty(self):
+        assert PersistentShellMixin._merge_output("", "") == ""
+
+    def test_strips_trailing_newlines(self):
+        assert PersistentShellMixin._merge_output("out\n\n", "err\n") == "out\nerr"
+
+
+class TestLocalOneShotRegression:
+    def test_echo(self):
+        env = LocalEnvironment(persistent=False)
+        r = env.execute("echo hello")
+        assert r["returncode"] == 0
+        assert "hello" in r["output"]
+        env.cleanup()
+
+    def test_exit_code(self):
+        env = LocalEnvironment(persistent=False)
+        r = env.execute("exit 42")
+        assert r["returncode"] == 42
+        env.cleanup()
+
+    def test_state_does_not_persist(self):
+        env = LocalEnvironment(persistent=False)
+        env.execute("export HERMES_ONESHOT_LOCAL=yes")
+        r = env.execute("echo $HERMES_ONESHOT_LOCAL")
+        assert r["output"].strip() == ""
+        env.cleanup()
+
+
+class TestLocalPersistent:
+    @pytest.fixture
+    def env(self):
+        e = LocalEnvironment(persistent=True)
+        yield e
+        e.cleanup()
+
+    def test_echo(self, env):
+        r = env.execute("echo hello-persistent")
+        assert r["returncode"] == 0
+        assert "hello-persistent" in r["output"]
+
+    def test_env_var_persists(self, env):
+        env.execute("export HERMES_LOCAL_PERSIST_TEST=works")
+        r = env.execute("echo $HERMES_LOCAL_PERSIST_TEST")
+        assert r["output"].strip() == "works"
+
+    def test_cwd_persists(self, env):
+        env.execute("cd /tmp")
+        r = env.execute("pwd")
+        assert r["output"].strip() == "/tmp"
+
+    def test_exit_code(self, env):
+        r = env.execute("(exit 42)")
+        assert r["returncode"] == 42
+
+    def test_stderr(self, env):
+        r = env.execute("echo oops >&2")
+        assert r["returncode"] == 0
+        assert "oops" in r["output"]
+
+    def test_multiline_output(self, env):
+        r = env.execute("echo a; echo b; echo c")
+        lines = r["output"].strip().splitlines()
+        assert lines == ["a", "b", "c"]
+
+    def test_timeout_then_recovery(self, env):
+        r = env.execute("sleep 999", timeout=2)
+        assert r["returncode"] in (124, 130)
+        r = env.execute("echo alive")
+        assert r["returncode"] == 0
+        assert "alive" in r["output"]
+
+    def test_large_output(self, env):
+        r = env.execute("seq 1 1000")
+        assert r["returncode"] == 0
+        lines = r["output"].strip().splitlines()
+        assert len(lines) == 1000
+        assert lines[0] == "1"
+        assert lines[-1] == "1000"
+
+    def test_shell_variable_persists(self, env):
+        env.execute("MY_LOCAL_VAR=hello123")
+        r = env.execute("echo $MY_LOCAL_VAR")
+        assert r["output"].strip() == "hello123"
+
+    def test_cleanup_removes_temp_files(self, env):
+        env.execute("echo warmup")
+        prefix = env._temp_prefix
+        assert len(glob_mod.glob(f"{prefix}-*")) > 0
+        env.cleanup()
+        remaining = glob_mod.glob(f"{prefix}-*")
+        assert remaining == []
+
+    def test_state_does_not_leak_between_instances(self):
+        env1 = LocalEnvironment(persistent=True)
+        env2 = LocalEnvironment(persistent=True)
+        try:
+            env1.execute("export LEAK_TEST=from_env1")
+            r = env2.execute("echo $LEAK_TEST")
+            assert r["output"].strip() == ""
+        finally:
+            env1.cleanup()
+            env2.cleanup()
+
+    def test_special_characters_in_command(self, env):
+        r = env.execute("echo 'hello world'")
+        assert r["output"].strip() == "hello world"
+
+    def test_pipe_command(self, env):
+        r = env.execute("echo hello | tr 'h' 'H'")
+        assert r["output"].strip() == "Hello"
+
+    def test_multiple_commands_semicolon(self, env):
+        r = env.execute("X=42; echo $X")
+        assert r["output"].strip() == "42"

tests/tools/test_ssh_environment.py

@@ -0,0 +1,167 @@
+"""Tests for the SSH remote execution environment backend."""
+
+import json
+import os
+import subprocess
+from unittest.mock import MagicMock
+
+import pytest
+
+from tools.environments.ssh import SSHEnvironment
+
+_SSH_HOST = os.getenv("TERMINAL_SSH_HOST", "")
+_SSH_USER = os.getenv("TERMINAL_SSH_USER", "")
+_SSH_PORT = int(os.getenv("TERMINAL_SSH_PORT", "22"))
+_SSH_KEY = os.getenv("TERMINAL_SSH_KEY", "")
+
+_has_ssh = bool(_SSH_HOST and _SSH_USER)
+
+requires_ssh = pytest.mark.skipif(
+    not _has_ssh,
+    reason="TERMINAL_SSH_HOST / TERMINAL_SSH_USER not set",
+)
+
+
+def _run(command, task_id="ssh_test", **kwargs):
+    from tools.terminal_tool import terminal_tool
+    return json.loads(terminal_tool(command, task_id=task_id, **kwargs))
+
+
+def _cleanup(task_id="ssh_test"):
+    from tools.terminal_tool import cleanup_vm
+    cleanup_vm(task_id)
+
+
+class TestBuildSSHCommand:
+
+    @pytest.fixture(autouse=True)
+    def _mock_connection(self, monkeypatch):
+        monkeypatch.setattr("tools.environments.ssh.subprocess.run",
+                            lambda *a, **k: subprocess.CompletedProcess([], 0))
+        monkeypatch.setattr("tools.environments.ssh.subprocess.Popen",
+                            lambda *a, **k: MagicMock(stdout=iter([]),
+                                                      stderr=iter([]),
+                                                      stdin=MagicMock()))
+        monkeypatch.setattr("tools.environments.ssh.time.sleep", lambda _: None)
+
+    def test_base_flags(self):
+        env = SSHEnvironment(host="h", user="u")
+        cmd = " ".join(env._build_ssh_command())
+        for flag in ("ControlMaster=auto", "ControlPersist=300",
+                      "BatchMode=yes", "StrictHostKeyChecking=accept-new"):
+            assert flag in cmd
+
+    def test_custom_port(self):
+        env = SSHEnvironment(host="h", user="u", port=2222)
+        cmd = env._build_ssh_command()
+        assert "-p" in cmd and "2222" in cmd
+
+    def test_key_path(self):
+        env = SSHEnvironment(host="h", user="u", key_path="/k")
+        cmd = env._build_ssh_command()
+        assert "-i" in cmd and "/k" in cmd
+
+    def test_user_host_suffix(self):
+        env = SSHEnvironment(host="h", user="u")
+        assert env._build_ssh_command()[-1] == "u@h"
+
+
+class TestTerminalToolConfig:
+    def test_ssh_persistent_default_false(self, monkeypatch):
+        monkeypatch.delenv("TERMINAL_SSH_PERSISTENT", raising=False)
+        from tools.terminal_tool import _get_env_config
+        assert _get_env_config()["ssh_persistent"] is False
+
+    def test_ssh_persistent_true(self, monkeypatch):
+        monkeypatch.setenv("TERMINAL_SSH_PERSISTENT", "true")
+        from tools.terminal_tool import _get_env_config
+        assert _get_env_config()["ssh_persistent"] is True
+
+
+def _setup_ssh_env(monkeypatch, persistent: bool):
+    monkeypatch.setenv("TERMINAL_ENV", "ssh")
+    monkeypatch.setenv("TERMINAL_SSH_HOST", _SSH_HOST)
+    monkeypatch.setenv("TERMINAL_SSH_USER", _SSH_USER)
+    monkeypatch.setenv("TERMINAL_SSH_PERSISTENT", "true" if persistent else "false")
+    if _SSH_PORT != 22:
+        monkeypatch.setenv("TERMINAL_SSH_PORT", str(_SSH_PORT))
+    if _SSH_KEY:
+        monkeypatch.setenv("TERMINAL_SSH_KEY", _SSH_KEY)
+
+
+@requires_ssh
+class TestOneShotSSH:
+
+    @pytest.fixture(autouse=True)
+    def _setup(self, monkeypatch):
+        _setup_ssh_env(monkeypatch, persistent=False)
+        yield
+        _cleanup()
+
+    def test_echo(self):
+        r = _run("echo hello")
+        assert r["exit_code"] == 0
+        assert "hello" in r["output"]
+
+    def test_exit_code(self):
+        r = _run("exit 42")
+        assert r["exit_code"] == 42
+
+    def test_state_does_not_persist(self):
+        _run("export HERMES_ONESHOT_TEST=yes")
+        r = _run("echo $HERMES_ONESHOT_TEST")
+        assert r["output"].strip() == ""
+
+
+@requires_ssh
+class TestPersistentSSH:
+
+    @pytest.fixture(autouse=True)
+    def _setup(self, monkeypatch):
+        _setup_ssh_env(monkeypatch, persistent=True)
+        yield
+        _cleanup()
+
+    def test_echo(self):
+        r = _run("echo hello-persistent")
+        assert r["exit_code"] == 0
+        assert "hello-persistent" in r["output"]
+
+    def test_env_var_persists(self):
+        _run("export HERMES_PERSIST_TEST=works")
+        r = _run("echo $HERMES_PERSIST_TEST")
+        assert r["output"].strip() == "works"
+
+    def test_cwd_persists(self):
+        _run("cd /tmp")
+        r = _run("pwd")
+        assert r["output"].strip() == "/tmp"
+
+    def test_exit_code(self):
+        r = _run("(exit 42)")
+        assert r["exit_code"] == 42
+
+    def test_stderr(self):
+        r = _run("echo oops >&2")
+        assert r["exit_code"] == 0
+        assert "oops" in r["output"]
+
+    def test_multiline_output(self):
+        r = _run("echo a; echo b; echo c")
+        lines = r["output"].strip().splitlines()
+        assert lines == ["a", "b", "c"]
+
+    def test_timeout_then_recovery(self):
+        r = _run("sleep 999", timeout=2)
+        assert r["exit_code"] == 124
+        r = _run("echo alive")
+        assert r["exit_code"] == 0
+        assert "alive" in r["output"]
+
+    def test_large_output(self):
+        r = _run("seq 1 1000")
+        assert r["exit_code"] == 0
+        lines = r["output"].strip().splitlines()
+        assert len(lines) == 1000
+        assert lines[0] == "1"
+        assert lines[-1] == "1000"

tools/environments/local.py

@@ -1,5 +1,6 @@
 """Local execution environment with interrupt support and non-blocking I/O."""
 
+import glob
 import os
 import platform
 import shutil
@@ -11,6 +12,8 @@ import time
 _IS_WINDOWS = platform.system() == "Windows"
 
 from tools.environments.base import BaseEnvironment
+from tools.environments.persistent_shell import PersistentShellMixin
+from tools.interrupt import is_interrupted
 
 # Unique marker to isolate real command output from shell init/exit noise.
 # printf (no trailing newline) keeps the boundaries clean for splitting.
@@ -244,6 +247,25 @@ def _clean_shell_noise(output: str) -> str:
     return result
 
 
+_SANE_PATH = "/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"
+
+
+def _make_run_env(env: dict) -> dict:
+    """Build a run environment with a sane PATH and provider-var stripping."""
+    merged = dict(os.environ | env)
+    run_env = {}
+    for k, v in merged.items():
+        if k.startswith(_HERMES_PROVIDER_ENV_FORCE_PREFIX):
+            real_key = k[len(_HERMES_PROVIDER_ENV_FORCE_PREFIX):]
+            run_env[real_key] = v
+        elif k not in _HERMES_PROVIDER_ENV_BLOCKLIST:
+            run_env[k] = v
+    existing_path = run_env.get("PATH", "")
+    if "/usr/bin" not in existing_path.split(":"):
+        run_env["PATH"] = f"{existing_path}:{_SANE_PATH}" if existing_path else _SANE_PATH
+    return run_env
+
+
 def _extract_fenced_output(raw: str) -> str:
     """Extract real command output from between fence markers.
 
@@ -268,7 +290,7 @@ def _extract_fenced_output(raw: str) -> str:
     return raw[start:last]
 
 
-class LocalEnvironment(BaseEnvironment):
+class LocalEnvironment(PersistentShellMixin, BaseEnvironment):
     """Run commands directly on the host machine.
 
     Features:
@@ -277,24 +299,66 @@ class LocalEnvironment(BaseEnvironment):
     - stdin_data support for piping content (bypasses ARG_MAX limits)
     - sudo -S transform via SUDO_PASSWORD env var
     - Uses interactive login shell so full user env is available
+    - Optional persistent shell mode (cwd/env vars survive across calls)
     """
 
-    def __init__(self, cwd: str = "", timeout: int = 60, env: dict = None):
+    def __init__(self, cwd: str = "", timeout: int = 60, env: dict = None,
+                 persistent: bool = False):
         super().__init__(cwd=cwd or os.getcwd(), timeout=timeout, env=env)
+        self.persistent = persistent
+        if self.persistent:
+            self._init_persistent_shell()
 
-    def execute(self, command: str, cwd: str = "", *,
-                timeout: int | None = None,
-                stdin_data: str | None = None) -> dict:
-        from tools.terminal_tool import _interrupt_event
+    @property
+    def _temp_prefix(self) -> str:
+        return f"/tmp/hermes-local-{self._session_id}"
 
+    def _spawn_shell_process(self) -> subprocess.Popen:
+        user_shell = _find_bash()
+        run_env = _make_run_env(self.env)
+        return subprocess.Popen(
+            [user_shell, "-l"],
+            stdin=subprocess.PIPE,
+            stdout=subprocess.PIPE,
+            stderr=subprocess.DEVNULL,
+            text=True,
+            env=run_env,
+            preexec_fn=None if _IS_WINDOWS else os.setsid,
+        )
+
+    def _read_temp_files(self, *paths: str) -> list[str]:
+        results = []
+        for path in paths:
+            if os.path.exists(path):
+                with open(path) as f:
+                    results.append(f.read())
+            else:
+                results.append("")
+        return results
+
+    def _kill_shell_children(self):
+        if self._shell_pid is None:
+            return
+        try:
+            subprocess.run(
+                ["pkill", "-P", str(self._shell_pid)],
+                capture_output=True, timeout=5,
+            )
+        except (subprocess.TimeoutExpired, FileNotFoundError):
+            pass
+
+    def _cleanup_temp_files(self):
+        for f in glob.glob(f"{self._temp_prefix}-*"):
+            if os.path.exists(f):
+                os.remove(f)
+
+    def _execute_oneshot(self, command: str, cwd: str = "", *,
+                         timeout: int | None = None,
+                         stdin_data: str | None = None) -> dict:
         work_dir = cwd or self.cwd or os.getcwd()
         effective_timeout = timeout or self.timeout
         exec_command, sudo_stdin = self._prepare_command(command)
 
-        # Merge the sudo password (if any) with caller-supplied stdin_data.
-        # sudo -S reads exactly one line (the password) then passes the rest
-        # of stdin to the child, so prepending is safe even when stdin_data
-        # is also present.
         if sudo_stdin is not None and stdin_data is not None:
             effective_stdin = sudo_stdin + stdin_data
         elif sudo_stdin is not None:
@@ -302,110 +366,87 @@ class LocalEnvironment(BaseEnvironment):
         else:
             effective_stdin = stdin_data
 
-        try:
-            # The fence wrapper uses bash syntax (semicolons, $?, printf).
-            # Always use bash for the wrapper — NOT $SHELL which could be
-            # fish, zsh, or another shell with incompatible syntax.
-            # The -lic flags source rc files so tools like nvm/pyenv work.
-            user_shell = _find_bash()
-            # Wrap with output fences so we can later extract the real
-            # command output and discard shell init/exit noise.
-            fenced_cmd = (
-                f"printf '{_OUTPUT_FENCE}';"
-                f" {exec_command};"
-                f" __hermes_rc=$?;"
-                f" printf '{_OUTPUT_FENCE}';"
-                f" exit $__hermes_rc"
-            )
-            # Ensure PATH always includes standard dirs — systemd services
-            # and some terminal multiplexers inherit a minimal PATH.
-            _SANE_PATH = "/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin"
-            # Strip Hermes-managed provider/tool/gateway vars so external CLIs
-            # are not silently misrouted or handed Hermes secrets. Callers that
-            # truly need a blocked var can opt in by prefixing the key with
-            # _HERMES_FORCE_ in self.env (e.g. _HERMES_FORCE_OPENAI_API_KEY).
-            run_env = _sanitize_subprocess_env(os.environ, self.env)
-            existing_path = run_env.get("PATH", "")
-            if "/usr/bin" not in existing_path.split(":"):
-                run_env["PATH"] = f"{existing_path}:{_SANE_PATH}" if existing_path else _SANE_PATH
+        user_shell = _find_bash()
+        fenced_cmd = (
+            f"printf '{_OUTPUT_FENCE}';"
+            f" {exec_command};"
+            f" __hermes_rc=$?;"
+            f" printf '{_OUTPUT_FENCE}';"
+            f" exit $__hermes_rc"
+        )
+        run_env = _make_run_env(self.env)
 
-            proc = subprocess.Popen(
-                [user_shell, "-lic", fenced_cmd],
-                text=True,
-                cwd=work_dir,
-                env=run_env,
-                encoding="utf-8",
-                errors="replace",
-                stdout=subprocess.PIPE,
-                stderr=subprocess.STDOUT,
-                stdin=subprocess.PIPE if effective_stdin is not None else subprocess.DEVNULL,
-                preexec_fn=None if _IS_WINDOWS else os.setsid,
-            )
+        proc = subprocess.Popen(
+            [user_shell, "-lic", fenced_cmd],
+            text=True,
+            cwd=work_dir,
+            env=run_env,
+            encoding="utf-8",
+            errors="replace",
+            stdout=subprocess.PIPE,
+            stderr=subprocess.STDOUT,
+            stdin=subprocess.PIPE if effective_stdin is not None else subprocess.DEVNULL,
+            preexec_fn=None if _IS_WINDOWS else os.setsid,
+        )
 
-            if effective_stdin is not None:
-                def _write_stdin():
-                    try:
-                        proc.stdin.write(effective_stdin)
-                        proc.stdin.close()
-                    except (BrokenPipeError, OSError):
-                        pass
-                threading.Thread(target=_write_stdin, daemon=True).start()
-
-            _output_chunks: list[str] = []
-
-            def _drain_stdout():
+        if effective_stdin is not None:
+            def _write_stdin():
                 try:
-                    for line in proc.stdout:
-                        _output_chunks.append(line)
-                except ValueError:
+                    proc.stdin.write(effective_stdin)
+                    proc.stdin.close()
+                except (BrokenPipeError, OSError):
                     pass
-                finally:
-                    try:
-                        proc.stdout.close()
-                    except Exception:
-                        pass
+            threading.Thread(target=_write_stdin, daemon=True).start()
 
-            reader = threading.Thread(target=_drain_stdout, daemon=True)
-            reader.start()
-            deadline = time.monotonic() + effective_timeout
+        _output_chunks: list[str] = []
 
-            while proc.poll() is None:
-                if _interrupt_event.is_set():
-                    try:
-                        if _IS_WINDOWS:
-                            proc.terminate()
-                        else:
-                            pgid = os.getpgid(proc.pid)
-                            os.killpg(pgid, signal.SIGTERM)
-                            try:
-                                proc.wait(timeout=1.0)
-                            except subprocess.TimeoutExpired:
-                                os.killpg(pgid, signal.SIGKILL)
-                    except (ProcessLookupError, PermissionError):
-                        proc.kill()
-                    reader.join(timeout=2)
-                    return {
-                        "output": "".join(_output_chunks) + "\n[Command interrupted — user sent a new message]",
-                        "returncode": 130,
-                    }
-                if time.monotonic() > deadline:
-                    try:
-                        if _IS_WINDOWS:
-                            proc.terminate()
-                        else:
-                            os.killpg(os.getpgid(proc.pid), signal.SIGTERM)
-                    except (ProcessLookupError, PermissionError):
-                        proc.kill()
-                    reader.join(timeout=2)
-                    return self._timeout_result(effective_timeout)
-                time.sleep(0.2)
+        def _drain_stdout():
+            try:
+                for line in proc.stdout:
+                    _output_chunks.append(line)
+            except ValueError:
+                pass
+            finally:
+                try:
+                    proc.stdout.close()
+                except Exception:
+                    pass
 
-            reader.join(timeout=5)
-            output = _extract_fenced_output("".join(_output_chunks))
-            return {"output": output, "returncode": proc.returncode}
+        reader = threading.Thread(target=_drain_stdout, daemon=True)
+        reader.start()
+        deadline = time.monotonic() + effective_timeout
 
-        except Exception as e:
-            return {"output": f"Execution error: {str(e)}", "returncode": 1}
+        while proc.poll() is None:
+            if is_interrupted():
+                try:
+                    if _IS_WINDOWS:
+                        proc.terminate()
+                    else:
+                        pgid = os.getpgid(proc.pid)
+                        os.killpg(pgid, signal.SIGTERM)
+                        try:
+                            proc.wait(timeout=1.0)
+                        except subprocess.TimeoutExpired:
+                            os.killpg(pgid, signal.SIGKILL)
+                except (ProcessLookupError, PermissionError):
+                    proc.kill()
+                reader.join(timeout=2)
+                return {
+                    "output": "".join(_output_chunks) + "\n[Command interrupted — user sent a new message]",
+                    "returncode": 130,
+                }
+            if time.monotonic() > deadline:
+                try:
+                    if _IS_WINDOWS:
+                        proc.terminate()
+                    else:
+                        os.killpg(os.getpgid(proc.pid), signal.SIGTERM)
+                except (ProcessLookupError, PermissionError):
+                    proc.kill()
+                reader.join(timeout=2)
+                return self._timeout_result(effective_timeout)
+            time.sleep(0.2)
 
-    def cleanup(self):
-        pass
+        reader.join(timeout=5)
+        output = _extract_fenced_output("".join(_output_chunks))
+        return {"output": output, "returncode": proc.returncode}

tools/environments/persistent_shell.py

@@ -0,0 +1,272 @@
+"""Persistent shell mixin: file-based IPC protocol for long-lived bash shells."""
+
+import logging
+import shlex
+import subprocess
+import threading
+import time
+import uuid
+from abc import abstractmethod
+
+from tools.interrupt import is_interrupted
+
+logger = logging.getLogger(__name__)
+
+
+class PersistentShellMixin:
+    """Mixin that adds persistent shell capability to any BaseEnvironment.
+
+    Subclasses must implement ``_spawn_shell_process()``, ``_read_temp_files()``,
+    ``_kill_shell_children()``, ``_execute_oneshot()``, and ``_cleanup_temp_files()``.
+    """
+
+    persistent: bool
+
+    @abstractmethod
+    def _spawn_shell_process(self) -> subprocess.Popen: ...
+
+    @abstractmethod
+    def _read_temp_files(self, *paths: str) -> list[str]: ...
+
+    @abstractmethod
+    def _kill_shell_children(self): ...
+
+    @abstractmethod
+    def _execute_oneshot(self, command: str, cwd: str, *,
+                         timeout: int | None = None,
+                         stdin_data: str | None = None) -> dict: ...
+
+    @abstractmethod
+    def _cleanup_temp_files(self): ...
+
+    _session_id: str = ""
+    _poll_interval: float = 0.01
+
+    @property
+    def _temp_prefix(self) -> str:
+        return f"/tmp/hermes-persistent-{self._session_id}"
+
+    # ------------------------------------------------------------------
+    # Lifecycle
+    # ------------------------------------------------------------------
+
+    def _init_persistent_shell(self):
+        self._shell_lock = threading.Lock()
+        self._shell_proc: subprocess.Popen | None = None
+        self._shell_alive: bool = False
+        self._shell_pid: int | None = None
+
+        self._session_id = uuid.uuid4().hex[:12]
+        p = self._temp_prefix
+        self._pshell_stdout = f"{p}-stdout"
+        self._pshell_stderr = f"{p}-stderr"
+        self._pshell_status = f"{p}-status"
+        self._pshell_cwd = f"{p}-cwd"
+        self._pshell_pid_file = f"{p}-pid"
+
+        self._shell_proc = self._spawn_shell_process()
+        self._shell_alive = True
+
+        self._drain_thread = threading.Thread(
+            target=self._drain_shell_output, daemon=True,
+        )
+        self._drain_thread.start()
+
+        init_script = (
+            f"export TERM=${{TERM:-dumb}}\n"
+            f"touch {self._pshell_stdout} {self._pshell_stderr} "
+            f"{self._pshell_status} {self._pshell_cwd} {self._pshell_pid_file}\n"
+            f"echo $$ > {self._pshell_pid_file}\n"
+            f"pwd > {self._pshell_cwd}\n"
+        )
+        self._send_to_shell(init_script)
+
+        deadline = time.monotonic() + 3.0
+        while time.monotonic() < deadline:
+            pid_str = self._read_temp_files(self._pshell_pid_file)[0].strip()
+            if pid_str.isdigit():
+                self._shell_pid = int(pid_str)
+                break
+            time.sleep(0.05)
+        else:
+            logger.warning("Could not read persistent shell PID")
+            self._shell_pid = None
+
+        if self._shell_pid:
+            logger.info(
+                "Persistent shell started (session=%s, pid=%d)",
+                self._session_id, self._shell_pid,
+            )
+
+        reported_cwd = self._read_temp_files(self._pshell_cwd)[0].strip()
+        if reported_cwd:
+            self.cwd = reported_cwd
+
+    def _cleanup_persistent_shell(self):
+        if self._shell_proc is None:
+            return
+
+        if self._session_id:
+            self._cleanup_temp_files()
+
+        try:
+            self._shell_proc.stdin.close()
+        except Exception:
+            pass
+        try:
+            self._shell_proc.terminate()
+            self._shell_proc.wait(timeout=3)
+        except subprocess.TimeoutExpired:
+            self._shell_proc.kill()
+
+        self._shell_alive = False
+        self._shell_proc = None
+
+        if hasattr(self, "_drain_thread") and self._drain_thread.is_alive():
+            self._drain_thread.join(timeout=1.0)
+
+    # ------------------------------------------------------------------
+    # execute() / cleanup() — shared dispatcher, subclasses inherit
+    # ------------------------------------------------------------------
+
+    def execute(self, command: str, cwd: str = "", *,
+                timeout: int | None = None,
+                stdin_data: str | None = None) -> dict:
+        if self.persistent:
+            return self._execute_persistent(
+                command, cwd, timeout=timeout, stdin_data=stdin_data,
+            )
+        return self._execute_oneshot(
+            command, cwd, timeout=timeout, stdin_data=stdin_data,
+        )
+
+    def cleanup(self):
+        if self.persistent:
+            self._cleanup_persistent_shell()
+
+    # ------------------------------------------------------------------
+    # Shell I/O
+    # ------------------------------------------------------------------
+
+    def _drain_shell_output(self):
+        try:
+            for _ in self._shell_proc.stdout:
+                pass
+        except Exception:
+            pass
+        self._shell_alive = False
+
+    def _send_to_shell(self, text: str):
+        if not self._shell_alive or self._shell_proc is None:
+            return
+        try:
+            self._shell_proc.stdin.write(text)
+            self._shell_proc.stdin.flush()
+        except (BrokenPipeError, OSError):
+            self._shell_alive = False
+
+    def _read_persistent_output(self) -> tuple[str, int, str]:
+        stdout, stderr, status_raw, cwd = self._read_temp_files(
+            self._pshell_stdout, self._pshell_stderr,
+            self._pshell_status, self._pshell_cwd,
+        )
+        output = self._merge_output(stdout, stderr)
+        status = status_raw.strip()
+        if ":" in status:
+            status = status.split(":", 1)[1]
+        try:
+            exit_code = int(status.strip())
+        except ValueError:
+            exit_code = 1
+        return output, exit_code, cwd.strip()
+
+    # ------------------------------------------------------------------
+    # Execution
+    # ------------------------------------------------------------------
+
+    def _execute_persistent(self, command: str, cwd: str, *,
+                            timeout: int | None = None,
+                            stdin_data: str | None = None) -> dict:
+        if not self._shell_alive:
+            logger.info("Persistent shell died, restarting...")
+            self._init_persistent_shell()
+
+        exec_command, sudo_stdin = self._prepare_command(command)
+        effective_timeout = timeout or self.timeout
+        if stdin_data or sudo_stdin:
+            return self._execute_oneshot(
+                command, cwd, timeout=timeout, stdin_data=stdin_data,
+            )
+
+        with self._shell_lock:
+            return self._execute_persistent_locked(
+                exec_command, cwd, effective_timeout,
+            )
+
+    def _execute_persistent_locked(self, command: str, cwd: str,
+                                   timeout: int) -> dict:
+        work_dir = cwd or self.cwd
+        cmd_id = uuid.uuid4().hex[:8]
+        truncate = (
+            f": > {self._pshell_stdout}\n"
+            f": > {self._pshell_stderr}\n"
+            f": > {self._pshell_status}\n"
+        )
+        self._send_to_shell(truncate)
+        escaped = command.replace("'", "'\\''")
+
+        ipc_script = (
+            f"cd {shlex.quote(work_dir)}\n"
+            f"eval '{escaped}' < /dev/null > {self._pshell_stdout} 2> {self._pshell_stderr}\n"
+            f"__EC=$?\n"
+            f"pwd > {self._pshell_cwd}\n"
+            f"echo {cmd_id}:$__EC > {self._pshell_status}\n"
+        )
+        self._send_to_shell(ipc_script)
+        deadline = time.monotonic() + timeout
+        poll_interval = self._poll_interval
+
+        while True:
+            if is_interrupted():
+                self._kill_shell_children()
+                output, _, _ = self._read_persistent_output()
+                return {
+                    "output": output + "\n[Command interrupted]",
+                    "returncode": 130,
+                }
+
+            if time.monotonic() > deadline:
+                self._kill_shell_children()
+                output, _, _ = self._read_persistent_output()
+                if output:
+                    return {
+                        "output": output + f"\n[Command timed out after {timeout}s]",
+                        "returncode": 124,
+                    }
+                return self._timeout_result(timeout)
+
+            if not self._shell_alive:
+                return {
+                    "output": "Persistent shell died during execution",
+                    "returncode": 1,
+                }
+
+            status_content = self._read_temp_files(self._pshell_status)[0].strip()
+            if status_content.startswith(cmd_id + ":"):
+                break
+
+            time.sleep(poll_interval)
+
+        output, exit_code, new_cwd = self._read_persistent_output()
+        if new_cwd:
+            self.cwd = new_cwd
+        return {"output": output, "returncode": exit_code}
+
+    @staticmethod
+    def _merge_output(stdout: str, stderr: str) -> str:
+        parts = []
+        if stdout.strip():
+            parts.append(stdout.rstrip("\n"))
+        if stderr.strip():
+            parts.append(stderr.rstrip("\n"))
+        return "\n".join(parts)

tools/environments/ssh.py

@@ -8,12 +8,13 @@ import time
 from pathlib import Path
 
 from tools.environments.base import BaseEnvironment
+from tools.environments.persistent_shell import PersistentShellMixin
 from tools.interrupt import is_interrupted
 
 logger = logging.getLogger(__name__)
 
 
-class SSHEnvironment(BaseEnvironment):
+class SSHEnvironment(PersistentShellMixin, BaseEnvironment):
     """Run commands on a remote machine over SSH.
 
     Uses SSH ControlMaster for connection persistence so subsequent
@@ -22,22 +23,33 @@ class SSHEnvironment(BaseEnvironment):
 
     Foreground commands are interruptible: the local ssh process is killed
     and a remote kill is attempted over the ControlMaster socket.
+
+    When ``persistent=True``, a single long-lived bash shell is kept alive
+    over SSH and state (cwd, env vars, shell variables) persists across
+    ``execute()`` calls.  Output capture uses file-based IPC on the remote
+    host (stdout/stderr/exit-code written to temp files, polled via fast
+    ControlMaster one-shot reads).
     """
 
     def __init__(self, host: str, user: str, cwd: str = "~",
-                 timeout: int = 60, port: int = 22, key_path: str = ""):
+                 timeout: int = 60, port: int = 22, key_path: str = "",
+                 persistent: bool = False):
         super().__init__(cwd=cwd, timeout=timeout)
         self.host = host
         self.user = user
         self.port = port
         self.key_path = key_path
+        self.persistent = persistent
 
         self.control_dir = Path(tempfile.gettempdir()) / "hermes-ssh"
         self.control_dir.mkdir(parents=True, exist_ok=True)
         self.control_socket = self.control_dir / f"{user}@{host}:{port}.sock"
         self._establish_connection()
 
-    def _build_ssh_command(self, extra_args: list = None) -> list:
+        if self.persistent:
+            self._init_persistent_shell()
+
+    def _build_ssh_command(self, extra_args: list | None = None) -> list:
         cmd = ["ssh"]
         cmd.extend(["-o", f"ControlPath={self.control_socket}"])
         cmd.extend(["-o", "ControlMaster=auto"])
@@ -65,15 +77,76 @@ class SSHEnvironment(BaseEnvironment):
         except subprocess.TimeoutExpired:
             raise RuntimeError(f"SSH connection to {self.user}@{self.host} timed out")
 
-    def execute(self, command: str, cwd: str = "", *,
-                timeout: int | None = None,
-                stdin_data: str | None = None) -> dict:
+    _poll_interval: float = 0.15
+
+    @property
+    def _temp_prefix(self) -> str:
+        return f"/tmp/hermes-ssh-{self._session_id}"
+
+    def _spawn_shell_process(self) -> subprocess.Popen:
+        cmd = self._build_ssh_command()
+        cmd.append("bash -l")
+        return subprocess.Popen(
+            cmd,
+            stdin=subprocess.PIPE,
+            stdout=subprocess.PIPE,
+            stderr=subprocess.DEVNULL,
+            text=True,
+        )
+
+    def _read_temp_files(self, *paths: str) -> list[str]:
+        if len(paths) == 1:
+            cmd = self._build_ssh_command()
+            cmd.append(f"cat {paths[0]} 2>/dev/null")
+            try:
+                result = subprocess.run(
+                    cmd, capture_output=True, text=True, timeout=10,
+                )
+                return [result.stdout]
+            except (subprocess.TimeoutExpired, OSError):
+                return [""]
+
+        delim = f"__HERMES_SEP_{self._session_id}__"
+        script = "; ".join(
+            f"cat {p} 2>/dev/null; echo '{delim}'" for p in paths
+        )
+        cmd = self._build_ssh_command()
+        cmd.append(script)
+        try:
+            result = subprocess.run(
+                cmd, capture_output=True, text=True, timeout=10,
+            )
+            parts = result.stdout.split(delim + "\n")
+            return [parts[i] if i < len(parts) else "" for i in range(len(paths))]
+        except (subprocess.TimeoutExpired, OSError):
+            return [""] * len(paths)
+
+    def _kill_shell_children(self):
+        if self._shell_pid is None:
+            return
+        cmd = self._build_ssh_command()
+        cmd.append(f"pkill -P {self._shell_pid} 2>/dev/null; true")
+        try:
+            subprocess.run(cmd, capture_output=True, timeout=5)
+        except (subprocess.TimeoutExpired, OSError):
+            pass
+
+    def _cleanup_temp_files(self):
+        cmd = self._build_ssh_command()
+        cmd.append(f"rm -f {self._temp_prefix}-*")
+        try:
+            subprocess.run(cmd, capture_output=True, timeout=5)
+        except (subprocess.TimeoutExpired, OSError):
+            pass
+
+    def _execute_oneshot(self, command: str, cwd: str = "", *,
+                         timeout: int | None = None,
+                         stdin_data: str | None = None) -> dict:
         work_dir = cwd or self.cwd
         exec_command, sudo_stdin = self._prepare_command(command)
         wrapped = f'cd {work_dir} && {exec_command}'
         effective_timeout = timeout or self.timeout
 
-        # Merge sudo password (if any) with caller-supplied stdin_data.
         if sudo_stdin is not None and stdin_data is not None:
             effective_stdin = sudo_stdin + stdin_data
         elif sudo_stdin is not None:
@@ -82,66 +155,60 @@ class SSHEnvironment(BaseEnvironment):
             effective_stdin = stdin_data
 
         cmd = self._build_ssh_command()
-        cmd.extend(["bash", "-c", wrapped])
+        cmd.append(wrapped)
 
-        try:
-            kwargs = self._build_run_kwargs(timeout, effective_stdin)
-            # Remove timeout from kwargs -- we handle it in the poll loop
-            kwargs.pop("timeout", None)
+        kwargs = self._build_run_kwargs(timeout, effective_stdin)
+        kwargs.pop("timeout", None)
+        _output_chunks = []
+        proc = subprocess.Popen(
+            cmd,
+            stdout=subprocess.PIPE,
+            stderr=subprocess.STDOUT,
+            stdin=subprocess.PIPE if effective_stdin else subprocess.DEVNULL,
+            text=True,
+        )
 
-            _output_chunks = []
+        if effective_stdin:
+            try:
+                proc.stdin.write(effective_stdin)
+                proc.stdin.close()
+            except (BrokenPipeError, OSError):
+                pass
 
-            proc = subprocess.Popen(
-                cmd,
-                stdout=subprocess.PIPE,
-                stderr=subprocess.STDOUT,
-                stdin=subprocess.PIPE if effective_stdin else subprocess.DEVNULL,
-                text=True,
-            )
+        def _drain():
+            try:
+                for line in proc.stdout:
+                    _output_chunks.append(line)
+            except Exception:
+                pass
 
-            if effective_stdin:
+        reader = threading.Thread(target=_drain, daemon=True)
+        reader.start()
+        deadline = time.monotonic() + effective_timeout
+
+        while proc.poll() is None:
+            if is_interrupted():
+                proc.terminate()
                 try:
-                    proc.stdin.write(effective_stdin)
-                    proc.stdin.close()
-                except Exception:
-                    pass
-
-            def _drain():
-                try:
-                    for line in proc.stdout:
-                        _output_chunks.append(line)
-                except Exception:
-                    pass
-
-            reader = threading.Thread(target=_drain, daemon=True)
-            reader.start()
-            deadline = time.monotonic() + effective_timeout
-
-            while proc.poll() is None:
-                if is_interrupted():
-                    proc.terminate()
-                    try:
-                        proc.wait(timeout=1)
-                    except subprocess.TimeoutExpired:
-                        proc.kill()
-                    reader.join(timeout=2)
-                    return {
-                        "output": "".join(_output_chunks) + "\n[Command interrupted]",
-                        "returncode": 130,
-                    }
-                if time.monotonic() > deadline:
+                    proc.wait(timeout=1)
+                except subprocess.TimeoutExpired:
                     proc.kill()
-                    reader.join(timeout=2)
-                    return self._timeout_result(effective_timeout)
-                time.sleep(0.2)
+                reader.join(timeout=2)
+                return {
+                    "output": "".join(_output_chunks) + "\n[Command interrupted]",
+                    "returncode": 130,
+                }
+            if time.monotonic() > deadline:
+                proc.kill()
+                reader.join(timeout=2)
+                return self._timeout_result(effective_timeout)
+            time.sleep(0.2)
 
-            reader.join(timeout=5)
-            return {"output": "".join(_output_chunks), "returncode": proc.returncode}
-
-        except Exception as e:
-            return {"output": f"SSH execution error: {str(e)}", "returncode": 1}
+        reader.join(timeout=5)
+        return {"output": "".join(_output_chunks), "returncode": proc.returncode}
 
     def cleanup(self):
+        super().cleanup()
         if self.control_socket.exists():
             try:
                 cmd = ["ssh", "-o", f"ControlPath={self.control_socket}",

tools/file_tools.py

@@ -114,12 +114,31 @@ def _get_file_ops(task_id: str = "default") -> ShellFileOperations:
                     "container_persistent": config.get("container_persistent", True),
                     "docker_volumes": config.get("docker_volumes", []),
                 }
+
+            ssh_config = None
+            if env_type == "ssh":
+                ssh_config = {
+                    "host": config.get("ssh_host", ""),
+                    "user": config.get("ssh_user", ""),
+                    "port": config.get("ssh_port", 22),
+                    "key": config.get("ssh_key", ""),
+                    "persistent": config.get("ssh_persistent", False),
+                }
+
+            local_config = None
+            if env_type == "local":
+                local_config = {
+                    "persistent": config.get("local_persistent", False),
+                }
+
             terminal_env = _create_environment(
                 env_type=env_type,
                 image=image,
                 cwd=cwd,
                 timeout=config["timeout"],
+                ssh_config=ssh_config,
                 container_config=container_config,
+                local_config=local_config,
                 task_id=task_id,
             )
 

tools/terminal_tool.py

@@ -471,6 +471,8 @@ def _get_env_config() -> Dict[str, Any]:
     # is running inside the container/remote).
     if env_type == "local":
         default_cwd = os.getcwd()
+    elif env_type == "ssh":
+        default_cwd = "~"
     else:
         default_cwd = "/root"
     
@@ -503,6 +505,8 @@ def _get_env_config() -> Dict[str, Any]:
         "ssh_user": os.getenv("TERMINAL_SSH_USER", ""),
         "ssh_port": _parse_env_var("TERMINAL_SSH_PORT", "22"),
         "ssh_key": os.getenv("TERMINAL_SSH_KEY", ""),
+        "ssh_persistent": os.getenv("TERMINAL_SSH_PERSISTENT", "false").lower() in ("true", "1", "yes"),
+        "local_persistent": os.getenv("TERMINAL_LOCAL_PERSISTENT", "false").lower() in ("true", "1", "yes"),
         # Container resource config (applies to docker, singularity, modal, daytona -- ignored for local/ssh)
         "container_cpu": _parse_env_var("TERMINAL_CONTAINER_CPU", "1", float, "number"),
         "container_memory": _parse_env_var("TERMINAL_CONTAINER_MEMORY", "5120"),     # MB (default 5GB)
@@ -514,6 +518,7 @@ def _get_env_config() -> Dict[str, Any]:
 
 def _create_environment(env_type: str, image: str, cwd: str, timeout: int,
                         ssh_config: dict = None, container_config: dict = None,
+                        local_config: dict = None,
                         task_id: str = "default"):
     """
     Create an execution environment from mini-swe-agent.
@@ -538,7 +543,9 @@ def _create_environment(env_type: str, image: str, cwd: str, timeout: int,
     volumes = cc.get("docker_volumes", [])
 
     if env_type == "local":
-        return _LocalEnvironment(cwd=cwd, timeout=timeout)
+        lc = local_config or {}
+        return _LocalEnvironment(cwd=cwd, timeout=timeout,
+                                 persistent=lc.get("persistent", False))
     
     elif env_type == "docker":
         return _DockerEnvironment(
@@ -594,6 +601,7 @@ def _create_environment(env_type: str, image: str, cwd: str, timeout: int,
             key_path=ssh_config.get("key", ""),
             cwd=cwd,
             timeout=timeout,
+            persistent=ssh_config.get("persistent", False),
         )
 
     else:
@@ -923,6 +931,7 @@ def terminal_tool(
                                 "user": config.get("ssh_user", ""),
                                 "port": config.get("ssh_port", 22),
                                 "key": config.get("ssh_key", ""),
+                                "persistent": config.get("ssh_persistent", False),
                             }
 
                         container_config = None
@@ -935,6 +944,12 @@ def terminal_tool(
                                 "docker_volumes": config.get("docker_volumes", []),
                             }
 
+                        local_config = None
+                        if env_type == "local":
+                            local_config = {
+                                "persistent": config.get("local_persistent", False),
+                            }
+
                         new_env = _create_environment(
                             env_type=env_type,
                             image=image,
@@ -942,6 +957,7 @@ def terminal_tool(
                             timeout=effective_timeout,
                             ssh_config=ssh_config,
                             container_config=container_config,
+                            local_config=local_config,
                             task_id=effective_task_id,
                         )
                     except ImportError as e: