Merge branch 'main' into fix/1336

- Remove duplicate atlas-toggle-btn button
- Fix button structure (all buttons properly closed)
- Fix mismatched button tags (31 opening, 31 closing)

Addresses issue #1336: fix: merge conflicts visible in index.html

Changes:
- Remove duplicate atlas-toggle-btn with title 'World Directory'
- Keep single atlas-toggle-btn with title 'Portal Atlas'
- Add missing closing tag for soul-toggle-btn
- Fix button nesting structure

Verification:
- Only 1 atlas-toggle-btn button found
- All 31 buttons properly closed
- test_index_html_integrity.py passes

GENOME.md

@@ -1,234 +0,0 @@
-# GENOME.md — The Nexus Codebase Architecture Map
-
-**Generated**: 2026-04-20
-**Repository**: Timmy_Foundation/the-nexus
-**Purpose**: Comprehensive map of the Nexus codebase for developers and AI agents.
-
----
-
-## Overview
-
-The Nexus is Timmy's canonical 3D/world repository — a sovereign AI agent visualization surface and local-first training ground. It combines a Three.js 3D browser world with Python cognition components, WebSocket bridges, and fleet orchestration tools.
-
-**Key Stats**:
-- ~357 source files
-- 201 Python files
-- 23 JavaScript files
-- 107 Markdown docs
-- 24 Shell scripts
-
----
-
-## Architecture
-
-```
-the-nexus/
-├── app.js                    # Main Three.js 3D world (frontend entry)
-├── index.html                # HTML shell
-├── style.css                 # Global styles
-├── server.py                 # WebSocket gateway
-├── gofai_worker.js           # GOFAI web worker
-├── portals.json              # Portal registry
-├── vision.json               # Vision points config
-├── provenance.json           # File integrity hashes
-│
-├── nexus/                    # Python cognition layer
-│   ├── components/           # Frontend JS modules
-│   ├── mnemosyne/            # Memory system
-│   ├── mempalace/            # Long-term memory
-│   └── symbolic-engine.js    # GOFAI rules
-│
-├── scripts/                  # Operational scripts
-├── bin/                      # CLI tools
-├── tests/                    # Test suite
-├── docs/                     # Documentation
-└── config/                   # Configuration files
-```
-
----
-
-## Frontend (Browser World)
-
-### Entry Points
-| File | Purpose |
-|------|---------|
-| `index.html` | HTML shell, HUD layout |
-| `app.js` | Main Three.js app (~141K lines) |
-| `style.css` | All styles (~61K) |
-| `gofai_worker.js` | Off-thread GOFAI reasoning |
-
-### Core Systems
-| System | File | Description |
-|--------|------|-------------|
-| 3D World | `app.js` | Three.js scene, camera, rendering |
-| GOFAI | `app.js` | Symbolic rules, blackboard, planner |
-| Memory | `nexus/components/spatial-memory.js` | 3D memory crystals |
-| Audio | `nexus/components/spatial-audio.js` | Spatial sound system |
-| Portals | `portals.json` | External service links |
-| Chat | `app.js` | Chat panel and messaging |
-| HUD | `app.js` + `style.css` | Heads-up display |
-
-### Components (`nexus/components/`)
-| Component | Purpose |
-|-----------|---------|
-| `spatial-memory.js` | 3D memory crystal visualization |
-| `spatial-audio.js` | Spatial sound for memories |
-| `memory-birth.js` | Memory creation animation |
-| `memory-pulse.js` | BFS pulse wave on click |
-| `memory-inspect.js` | Memory detail panel |
-| `memory-connections.js` | Connection graph |
-| `memory-particles.js` | Particle effects |
-| `memory-optimizer.js` | Memory cleanup |
-| `session-rooms.js` | Evennia room snapshots |
-| `timeline-scrubber.js` | Time navigation |
-| `resonance-visualizer.js` | Pattern visualization |
-| `portal-health-check.js` | Portal status monitoring |
-| `spatial-chat.js` | 3D audio chat notifications |
-
----
-
-## Backend (Python)
-
-### Core Services
-| File | Purpose |
-|------|---------|
-| `server.py` | WebSocket gateway for real-time comms |
-| `multi_user_bridge.py` | Multi-user MUD bridge |
-| `gitea_api/` | Gitea API helpers |
-
-### Scripts (`scripts/`)
-| Script | Purpose |
-|--------|---------|
-| `cleanup-duplicate-prs.sh` | Close duplicate PRs |
-| `check-existing-prs.sh` | Pre-flight PR check |
-| `pr_backlog_analyzer.py` | PR backlog analysis |
-| `audit_mempalace_privacy.py` | Privacy audit |
-| `provision-runner.sh` | Runner setup |
-| `runner_health_probe.sh` | Health monitoring |
-
-### Bin Tools (`bin/`)
-| Tool | Purpose |
-|------|---------|
-| `enforce_branch_protection.py` | Branch protection enforcement |
-| `check_duplicate_milestones.py` | Milestone cleanup |
-| `generate_provenance.py` | Provenance hash generation |
-
----
-
-## Data Files
-
-| File | Format | Purpose |
-|------|--------|---------|
-| `portals.json` | JSON | Portal registry (8 portals) |
-| `vision.json` | JSON | Vision points |
-| `world_state.json` | JSON | World state snapshot |
-| `provenance.json` | JSON | File integrity hashes |
-| `manifest.json` | JSON | PWA manifest |
-
----
-
-## Configuration
-
-| File | Purpose |
-|------|---------|
-| `.gitea/branch-protection/` | Branch protection rules |
-| `.github/workflows/` | CI/CD workflows |
-| `config/` | Runtime configuration |
-| `pytest.ini` | Test configuration |
-
----
-
-## Testing
-
-| Directory | Coverage |
-|-----------|----------|
-| `tests/` | Unit and integration tests |
-| `tests/test_provenance.py` | File integrity tests |
-| `tests/test_spatial_search.js` | Spatial search tests |
-
-Run tests:
-```bash
-python3 -m pytest tests/ -v
-node --test tests/*.js
-```
-
----
-
-## Key Patterns
-
-### Component Pattern
-```javascript
-const ComponentName = (() => {
-  let _state = null;
-  
-  function init(config) { ... }
-  function update(delta) { ... }
-  
-  return { init, update };
-})();
-
-export { ComponentName };
-```
-
-### WebSocket Pattern
-```python
-async def handler(websocket):
-    async for message in websocket:
-        # Process and broadcast
-        pass
-```
-
-### Portal Schema
-```json
-{
-  "id": "portal-id",
-  "name": "Display Name",
-  "portal_type": "game-world",
-  "destination": { "url": "...", "type": "harness" }
-}
-```
-
----
-
-## Security
-
-- WebSocket gateway binds to `127.0.0.1` by default
-- Optional token authentication via `NEXUS_WS_TOKEN`
-- Rate limiting on connections and messages
-- Branch protection on `main`
-- Provenance hash verification
-
-See `SECURITY.md` for full details.
-
----
-
-## Related Repos
-
-| Repo | Relationship |
-|------|--------------|
-| `timmy-config` | Configuration and fleet management |
-| `hermes-agent` | Agent runtime |
-| `timmy-home` | SOUL.md and core docs |
-| `the-door` | Crisis detection system |
-
----
-
-## Quick Start
-
-```bash
-# Clone
-git clone https://forge.alexanderwhitestone.com/Timmy_Foundation/the-nexus.git
-
-# Run WebSocket gateway
-python3 server.py
-
-# Open browser world
-open index.html
-
-# Run tests
-python3 -m pytest tests/
-```
-
----
-
-*This GENOME.md is auto-maintained. Update when adding major new systems.*

index.html

@@ -165,10 +165,10 @@
 
   <!-- Top Right: Agent Log, Atlas & SOUL Toggle -->
   <div class="hud-top-right">
-    <button id="atlas-toggle-btn" class="hud-icon-btn" title="World Directory">
     <button id="soul-toggle-btn" class="hud-icon-btn" title="Timmy's SOUL">
       <span class="hud-icon">✦</span>
       <span class="hud-btn-label">SOUL</span>
+    </button>
     <button id="mode-toggle-btn" class="hud-icon-btn mode-toggle" title="Toggle Mode">
       <span class="hud-icon">👁</span>
       <span class="hud-btn-label" id="mode-label">VISITOR</span>