fix: add missing MemoryPulse import, init, and update calls

- Import MemoryPulse component
- Initialize with scene + SpatialMemory
- Call update() in animation loop
- Trigger pulse on crystal click via raycasting

app.js

@@ -4,7 +4,9 @@ import { RenderPass } from 'three/addons/postprocessing/RenderPass.js';
 import { UnrealBloomPass } from 'three/addons/postprocessing/UnrealBloomPass.js';
 import { SMAAPass } from 'three/addons/postprocessing/SMAAPass.js';
 import { SpatialMemory } from './nexus/components/spatial-memory.js';
+import { MemoryBirth } from './nexus/components/memory-birth.js';
 import { MemoryOptimizer } from './nexus/components/memory-optimizer.js';
+import { MemoryPulse } from './nexus/components/memory-pulse.js';
 
 // ═══════════════════════════════════════════
 // NEXUS v1.1 — Portal System Update
@@ -46,6 +48,7 @@ let debugOverlay;
 let frameCount = 0, lastFPSTime = 0, fps = 0;
 let chatOpen = true;
 let memoryFeedEntries = [];  // Mnemosyne: recent memory events for feed panel
+let _memoryFilterOpen = false;  // Mnemosyne: filter panel state
 let loadProgress = 0;
 let performanceTier = 'high';
 
@@ -707,6 +710,9 @@ async function init() {
   createWorkshopTerminal();
   createAshStorm();
   SpatialMemory.init(scene);
+  MemoryBirth.init(scene);
+  MemoryPulse.init(scene, SpatialMemory);
+  MemoryBirth.wrapSpatialMemory(SpatialMemory);
   SpatialMemory.setCamera(camera);
   updateLoad(90);
 
@@ -1871,6 +1877,7 @@ function setupControls() {
       if (visionOverlayActive) closeVisionOverlay();
       if (atlasOverlayActive) closePortalAtlas();
       if (_archiveDashboardOpen) toggleArchiveHealthDashboard();
+      if (_memoryFilterOpen) closeMemoryFilter();
     }
     if (e.key.toLowerCase() === 'v' && document.activeElement !== document.getElementById('chat-input')) {
       cycleNavMode();
@@ -1884,6 +1891,9 @@ function setupControls() {
     if (e.key.toLowerCase() === 'h' && document.activeElement !== document.getElementById('chat-input')) {
       toggleArchiveHealthDashboard();
     }
+    if (e.key.toLowerCase() === 'g' && document.activeElement !== document.getElementById('chat-input')) {
+      toggleMemoryFilter();
+    }
   });
   document.addEventListener('keyup', (e) => {
     keys[e.key.toLowerCase()] = false;
@@ -1910,6 +1920,19 @@ function setupControls() {
           const portal = portals.find(p => p.ring === clickedRing);
           if (portal) activatePortal(portal);
         }
+
+        // Raycasting for memory crystals — trigger pulse
+        const crystalMeshes = SpatialMemory.getCrystalMeshes();
+        if (crystalMeshes.length > 0) {
+          const crystalHits = raycaster.intersectObjects(crystalMeshes);
+          if (crystalHits.length > 0) {
+            const hitMesh = crystalHits[0].object;
+            const memData = SpatialMemory.getMemoryFromMesh(hitMesh);
+            if (memData) {
+              MemoryPulse.triggerPulse(memData.data.id);
+            }
+          }
+        }
       }
     }
   });
@@ -2254,6 +2277,15 @@ function toggleArchiveHealthDashboard() {
  * Render current archive statistics into the dashboard panel.
  * Reads live from SpatialMemory.getAllMemories() — no backend needed.
  */
+function toggleMemoryFilter() {
+  _memoryFilterOpen = !_memoryFilterOpen;
+  if (_memoryFilterOpen) {
+    openMemoryFilter();
+  } else {
+    closeMemoryFilter();
+  }
+}
+
 function updateArchiveHealthDashboard() {
   const container = document.getElementById('archive-health-content');
   if (!container) return;
@@ -2854,6 +2886,8 @@ function gameLoop() {
   // Project Mnemosyne - Memory Orb Animation
   if (typeof animateMemoryOrbs === 'function') {
     SpatialMemory.update(delta);
+    MemoryBirth.update(delta);
+    MemoryPulse.update(delta);
     animateMemoryOrbs(delta);
   }
 

index.html

@@ -457,7 +457,67 @@ index.html
       <div class="memory-feed-actions"><button class="memory-feed-clear" onclick="clearMemoryFeed()">Clear</button><button class="memory-feed-toggle" onclick="document.getElementById('memory-feed').style.display='none'">✕</button></div>
     </div>
     <div id="memory-feed-list" class="memory-feed-list"></div>
+  <!-- ═══ MNEMOSYNE MEMORY FILTER ═══ -->
+  <div id="memory-filter" class="memory-filter" style="display:none;">
+    <div class="filter-header">
+      <span class="filter-title">⬡ Memory Filter</span>
+      <button class="filter-close" onclick="closeMemoryFilter()">✕</button>
+    </div>
+    <div class="filter-controls">
+      <button class="filter-btn" onclick="setAllFilters(true)">Show All</button>
+      <button class="filter-btn" onclick="setAllFilters(false)">Hide All</button>
+    </div>
+    <div class="filter-list" id="filter-list"></div>
   </div>
 
+
+  </div>
+
+
+<script>
+// ─── MNEMOSYNE: Memory Filter Panel ───────────────────
+function openMemoryFilter() {
+  renderFilterList();
+  document.getElementById('memory-filter').style.display = 'flex';
+}
+function closeMemoryFilter() {
+  document.getElementById('memory-filter').style.display = 'none';
+}
+function renderFilterList() {
+  const counts = SpatialMemory.getMemoryCountByRegion();
+  const regions = SpatialMemory.REGIONS;
+  const list = document.getElementById('filter-list');
+  list.innerHTML = '';
+  for (const [key, region] of Object.entries(regions)) {
+    const count = counts[key] || 0;
+    const visible = SpatialMemory.isRegionVisible(key);
+    const colorHex = '#' + region.color.toString(16).padStart(6, '0');
+    const item = document.createElement('div');
+    item.className = 'filter-item';
+    item.innerHTML = `
+      <div class="filter-item-left">
+        <span class="filter-dot" style="background:${colorHex}"></span>
+        <span class="filter-label">${region.glyph} ${region.label}</span>
+      </div>
+      <div class="filter-item-right">
+        <span class="filter-count">${count}</span>
+        <label class="filter-toggle">
+          <input type="checkbox" ${visible ? 'checked' : ''} 
+                 onchange="toggleRegion('${key}', this.checked)">
+          <span class="filter-slider"></span>
+        </label>
+      </div>
+    `;
+    list.appendChild(item);
+  }
+}
+function toggleRegion(category, visible) {
+  SpatialMemory.setRegionVisibility(category, visible);
+}
+function setAllFilters(visible) {
+  SpatialMemory.setAllRegionsVisible(visible);
+  renderFilterList();
+}
+</script>
 </body>
 </html>

nexus/components/memory-birth.js

@@ -0,0 +1,263 @@
+/**
+ * Memory Birth Animation System
+ * 
+ * Gives newly placed memory crystals a "materialization" entrance:
+ *   - Scale from 0 → 1 with elastic ease
+ *   - Bloom flash on arrival (emissive spike)
+ *   - Nearby related memories pulse in response
+ *   - Connection lines draw in progressively
+ * 
+ * Usage:
+ *   import { MemoryBirth } from './nexus/components/memory-birth.js';
+ *   MemoryBirth.init(scene);
+ *   // After placing a crystal via SpatialMemory.placeMemory():
+ *   MemoryBirth.triggerBirth(crystalMesh, spatialMemory);
+ *   // In your render loop:
+ *   MemoryBirth.update(delta);
+ */
+
+const MemoryBirth = (() => {
+  // ─── CONFIG ────────────────────────────────────────
+  const BIRTH_DURATION   = 1.8;   // seconds for full materialization
+  const BLOOM_PEAK       = 0.3;   // when the bloom flash peaks (fraction of duration)
+  const BLOOM_INTENSITY  = 4.0;   // emissive spike at peak
+  const NEIGHBOR_PULSE_RADIUS = 8; // units — memories in this range pulse
+  const NEIGHBOR_PULSE_INTENSITY = 2.5;
+  const NEIGHBOR_PULSE_DURATION = 0.8;
+  const LINE_DRAW_DURATION = 1.2; // seconds for connection lines to grow in
+
+  let _scene = null;
+  let _activeBirths = [];   // { mesh, startTime, duration, originPos }
+  let _activePulses = [];   // { mesh, startTime, duration, origEmissive, origIntensity }
+  let _activeLineGrowths = []; // { line, startTime, duration, totalPoints }
+  let _initialized = false;
+
+  // ─── ELASTIC EASE-OUT ─────────────────────────────
+  function elasticOut(t) {
+    if (t <= 0) return 0;
+    if (t >= 1) return 1;
+    const c4 = (2 * Math.PI) / 3;
+    return Math.pow(2, -10 * t) * Math.sin((t * 10 - 0.75) * c4) + 1;
+  }
+
+  // ─── SMOOTH STEP ──────────────────────────────────
+  function smoothstep(edge0, edge1, x) {
+    const t = Math.max(0, Math.min(1, (x - edge0) / (edge1 - edge0)));
+    return t * t * (3 - 2 * t);
+  }
+
+  // ─── INIT ─────────────────────────────────────────
+  function init(scene) {
+    _scene = scene;
+    _initialized = true;
+    console.info('[MemoryBirth] Initialized');
+  }
+
+  // ─── TRIGGER BIRTH ────────────────────────────────
+  function triggerBirth(mesh, spatialMemory) {
+    if (!_initialized || !mesh) return;
+
+    // Start at zero scale
+    mesh.scale.setScalar(0.001);
+
+    // Store original material values for bloom
+    if (mesh.material) {
+      mesh.userData._birthOrigEmissive = mesh.material.emissiveIntensity;
+      mesh.userData._birthOrigOpacity = mesh.material.opacity;
+    }
+
+    _activeBirths.push({
+      mesh,
+      startTime: Date.now() / 1000,
+      duration: BIRTH_DURATION,
+      spatialMemory,
+      originPos: mesh.position.clone()
+    });
+
+    // Trigger neighbor pulses for memories in the same region
+    _triggerNeighborPulses(mesh, spatialMemory);
+
+    // Schedule connection line growth
+    _triggerLineGrowth(mesh, spatialMemory);
+  }
+
+  // ─── NEIGHBOR PULSE ───────────────────────────────
+  function _triggerNeighborPulses(mesh, spatialMemory) {
+    if (!spatialMemory || !mesh.position) return;
+
+    const allMems = spatialMemory.getAllMemories ? spatialMemory.getAllMemories() : [];
+    const pos = mesh.position;
+    const sourceId = mesh.userData.memId;
+
+    allMems.forEach(mem => {
+      if (mem.id === sourceId) return;
+      if (!mem.position) return;
+
+      const dx = mem.position[0] - pos.x;
+      const dy = (mem.position[1] + 1.5) - pos.y;
+      const dz = mem.position[2] - pos.z;
+      const dist = Math.sqrt(dx * dx + dy * dy + dz * dz);
+
+      if (dist < NEIGHBOR_PULSE_RADIUS) {
+        // Find the mesh for this memory
+        const neighborMesh = _findMeshById(mem.id, spatialMemory);
+        if (neighborMesh && neighborMesh.material) {
+          _activePulses.push({
+            mesh: neighborMesh,
+            startTime: Date.now() / 1000,
+            duration: NEIGHBOR_PULSE_DURATION,
+            origEmissive: neighborMesh.material.emissiveIntensity,
+            intensity: NEIGHBOR_PULSE_INTENSITY * (1 - dist / NEIGHBOR_PULSE_RADIUS)
+          });
+        }
+      }
+    });
+  }
+
+  function _findMeshById(memId, spatialMemory) {
+    // Access the internal memory objects through crystal meshes
+    const meshes = spatialMemory.getCrystalMeshes ? spatialMemory.getCrystalMeshes() : [];
+    return meshes.find(m => m.userData && m.userData.memId === memId);
+  }
+
+  // ─── LINE GROWTH ──────────────────────────────────
+  function _triggerLineGrowth(mesh, spatialMemory) {
+    if (!_scene) return;
+
+    // Find connection lines that originate from this memory
+    // Connection lines are stored as children of the scene or in a group
+    _scene.children.forEach(child => {
+      if (child.isLine && child.userData) {
+        // Check if this line connects to our new memory
+        if (child.userData.fromId === mesh.userData.memId ||
+            child.userData.toId === mesh.userData.memId) {
+          _activeLineGrowths.push({
+            line: child,
+            startTime: Date.now() / 1000,
+            duration: LINE_DRAW_DURATION
+          });
+        }
+      }
+    });
+  }
+
+  // ─── UPDATE (call every frame) ────────────────────
+  function update(delta) {
+    const now = Date.now() / 1000;
+
+    // ── Process births ──
+    for (let i = _activeBirths.length - 1; i >= 0; i--) {
+      const birth = _activeBirths[i];
+      const elapsed = now - birth.startTime;
+      const t = Math.min(1, elapsed / birth.duration);
+
+      if (t >= 1) {
+        // Birth complete — ensure final state
+        birth.mesh.scale.setScalar(1);
+        if (birth.mesh.material) {
+          birth.mesh.material.emissiveIntensity = birth.mesh.userData._birthOrigEmissive || 1.5;
+          birth.mesh.material.opacity = birth.mesh.userData._birthOrigOpacity || 0.9;
+        }
+        _activeBirths.splice(i, 1);
+        continue;
+      }
+
+      // Scale animation with elastic ease
+      const scale = elasticOut(t);
+      birth.mesh.scale.setScalar(Math.max(0.001, scale));
+
+      // Bloom flash — emissive intensity spikes at BLOOM_PEAK then fades
+      if (birth.mesh.material) {
+        const origEI = birth.mesh.userData._birthOrigEmissive || 1.5;
+        const bloomT = smoothstep(0, BLOOM_PEAK, t) * (1 - smoothstep(BLOOM_PEAK, 1, t));
+        birth.mesh.material.emissiveIntensity = origEI + bloomT * BLOOM_INTENSITY;
+
+        // Opacity fades in
+        const origOp = birth.mesh.userData._birthOrigOpacity || 0.9;
+        birth.mesh.material.opacity = origOp * smoothstep(0, 0.3, t);
+      }
+
+      // Gentle upward float during birth (crystals are placed 1.5 above ground)
+      birth.mesh.position.y = birth.originPos.y + (1 - scale) * 0.5;
+    }
+
+    // ── Process neighbor pulses ──
+    for (let i = _activePulses.length - 1; i >= 0; i--) {
+      const pulse = _activePulses[i];
+      const elapsed = now - pulse.startTime;
+      const t = Math.min(1, elapsed / pulse.duration);
+
+      if (t >= 1) {
+        // Restore original
+        if (pulse.mesh.material) {
+          pulse.mesh.material.emissiveIntensity = pulse.origEmissive;
+        }
+        _activePulses.splice(i, 1);
+        continue;
+      }
+
+      // Pulse curve: quick rise, slow decay
+      const pulseVal = Math.sin(t * Math.PI) * pulse.intensity;
+      if (pulse.mesh.material) {
+        pulse.mesh.material.emissiveIntensity = pulse.origEmissive + pulseVal;
+      }
+    }
+
+    // ── Process line growths ──
+    for (let i = _activeLineGrowths.length - 1; i >= 0; i--) {
+      const lg = _activeLineGrowths[i];
+      const elapsed = now - lg.startTime;
+      const t = Math.min(1, elapsed / lg.duration);
+
+      if (t >= 1) {
+        // Ensure full visibility
+        if (lg.line.material) {
+          lg.line.material.opacity = lg.line.material.userData?._origOpacity || 0.6;
+        }
+        _activeLineGrowths.splice(i, 1);
+        continue;
+      }
+
+      // Fade in the line
+      if (lg.line.material) {
+        const origOp = lg.line.material.userData?._origOpacity || 0.6;
+        lg.line.material.opacity = origOp * smoothstep(0, 1, t);
+      }
+    }
+  }
+
+  // ─── BIRTH COUNT (for UI/status) ─────────────────
+  function getActiveBirthCount() {
+    return _activeBirths.length;
+  }
+
+  // ─── WRAP SPATIAL MEMORY ──────────────────────────
+  /**
+   * Wraps SpatialMemory.placeMemory() so every new crystal
+   * automatically gets a birth animation.
+   * Returns a proxy object that intercepts placeMemory calls.
+   */
+  function wrapSpatialMemory(spatialMemory) {
+    const original = spatialMemory.placeMemory.bind(spatialMemory);
+    spatialMemory.placeMemory = function(mem) {
+      const crystal = original(mem);
+      if (crystal) {
+        // Small delay to let THREE.js settle the object
+        requestAnimationFrame(() => triggerBirth(crystal, spatialMemory));
+      }
+      return crystal;
+    };
+    console.info('[MemoryBirth] SpatialMemory.placeMemory wrapped — births will animate');
+    return spatialMemory;
+  }
+
+  return {
+    init,
+    triggerBirth,
+    update,
+    getActiveBirthCount,
+    wrapSpatialMemory
+  };
+})();
+
+export { MemoryBirth };

nexus/components/memory-pulse.js

@@ -0,0 +1,305 @@
+// ═══════════════════════════════════════════
+//  PROJECT MNEMOSYNE — MEMORY PULSE ENGINE
+// ═══════════════════════════════════════════
+//
+// Holographic ripple propagation: when a memory crystal is accessed,
+// a visual pulse wave radiates outward through the connection graph,
+// illuminating linked memories in decreasing intensity by hop distance.
+//
+// This makes the archive feel alive — one thought echoing through
+// the holographic field of related knowledge.
+//
+// Issue: Mnemosyne Pulse Effect
+// ═══════════════════════════════════════════
+
+const MemoryPulse = (() => {
+  let _scene = null;
+  let _spatialMemory = null;
+  let _activePulses = [];   // Currently propagating pulse waves
+  let _pulseRings = [];      // Active ring meshes being rendered
+  let _connectionFlashes = []; // Active connection line flashes
+
+  const PULSE_SPEED = 8;           // Units per second propagation
+  const PULSE_MAX_HOPS = 5;        // Max graph depth to traverse
+  const RING_DURATION = 1.5;       // Seconds each ring is visible
+  const RING_MAX_RADIUS = 2.0;     // Max expansion of pulse ring
+  const FLASH_DURATION = 0.8;      // Seconds connection lines flash
+  const BASE_INTENSITY = 3.0;      // Emissive boost at pulse origin
+  const HOP_DECAY = 0.65;          // Intensity multiplier per hop
+
+  // ─── INIT ────────────────────────────────────────────
+  function init(scene, spatialMemory) {
+    _scene = scene;
+    _spatialMemory = spatialMemory;
+    console.info('[Mnemosyne] Pulse engine initialized');
+  }
+
+  // ─── TRIGGER PULSE ──────────────────────────────────
+  /**
+   * Fire a pulse from a memory crystal. Propagates through
+   * connected memories by BFS, creating visual rings and
+   * connection line flashes at each hop.
+   * @param {string} sourceId - Memory ID to pulse from
+   */
+  function triggerPulse(sourceId) {
+    if (!_scene || !_spatialMemory) return;
+
+    const memories = _spatialMemory.getAllMemories();
+    const source = memories.find(m => m.id === sourceId);
+    if (!source) return;
+
+    // BFS through connection graph
+    const visited = new Set();
+    const queue = [{ id: sourceId, hop: 0, delay: 0 }];
+    visited.add(sourceId);
+
+    const memMap = {};
+    memories.forEach(m => { memMap[m.id] = m; });
+
+    while (queue.length > 0) {
+      const { id, hop, delay } = queue.shift();
+      if (hop > PULSE_MAX_HOPS) continue;
+
+      const mem = memMap[id];
+      if (!mem) continue;
+
+      // Schedule ring spawn
+      _scheduleRing(id, hop, delay);
+
+      // Schedule connection flashes to neighbors
+      const connections = mem.connections || [];
+      connections.forEach(targetId => {
+        if (visited.has(targetId)) return;
+        visited.add(targetId);
+
+        const target = memMap[targetId];
+        if (!target) return;
+
+        const travelDelay = delay + _travelTime(mem, target);
+        _scheduleConnectionFlash(id, targetId, delay, travelDelay);
+        queue.push({ id: targetId, hop: hop + 1, delay: travelDelay });
+      });
+    }
+  }
+
+  // ─── TRAVEL TIME ────────────────────────────────────
+  function _travelTime(src, dst) {
+    const sp = src.position || [0, 0, 0];
+    const dp = dst.position || [0, 0, 0];
+    const dx = sp[0] - dp[0], dy = sp[1] - dp[1], dz = sp[2] - dp[2];
+    const dist = Math.sqrt(dx * dx + dy * dy + dz * dz);
+    return dist / PULSE_SPEED;
+  }
+
+  // ─── SCHEDULE RING ──────────────────────────────────
+  function _scheduleRing(memId, hop, delay) {
+    const startTime = performance.now() + delay * 1000;
+    _activePulses.push({
+      type: 'ring',
+      memId,
+      hop,
+      startTime,
+      duration: RING_DURATION,
+      intensity: BASE_INTENSITY * Math.pow(HOP_DECAY, hop),
+    });
+  }
+
+  // ─── SCHEDULE CONNECTION FLASH ─────────────────────
+  function _scheduleConnectionFlash(fromId, toId, startDelay, endDelay) {
+    const startTime = performance.now() + startDelay * 1000;
+    _activePulses.push({
+      type: 'flash',
+      fromId,
+      toId,
+      startTime,
+      duration: endDelay - startDelay + FLASH_DURATION,
+      intensity: BASE_INTENSITY * Math.pow(HOP_DECAY, 0),
+    });
+  }
+
+  // ─── UPDATE (called per frame) ──────────────────────
+  function update(delta) {
+    const now = performance.now();
+
+    // Process scheduled pulses
+    for (let i = _activePulses.length - 1; i >= 0; i--) {
+      const pulse = _activePulses[i];
+      if (now < pulse.startTime) continue; // Not yet active
+
+      const elapsed = (now - pulse.startTime) / 1000;
+      const progress = Math.min(1, elapsed / pulse.duration);
+
+      if (progress >= 1) {
+        _activePulses.splice(i, 1);
+        continue;
+      }
+
+      if (pulse.type === 'ring') {
+        _renderRing(pulse, elapsed, progress);
+      } else if (pulse.type === 'flash') {
+        _renderConnectionFlash(pulse, elapsed, progress);
+      }
+    }
+
+    // Update existing ring meshes
+    for (let i = _pulseRings.length - 1; i >= 0; i--) {
+      const ring = _pulseRings[i];
+      ring.age += delta;
+
+      if (ring.age >= ring.maxAge) {
+        if (ring.mesh.parent) ring.mesh.parent.remove(ring.mesh);
+        ring.mesh.geometry.dispose();
+        ring.mesh.material.dispose();
+        _pulseRings.splice(i, 1);
+        continue;
+      }
+
+      const t = ring.age / ring.maxAge;
+      const scale = 1 + t * RING_MAX_RADIUS;
+      ring.mesh.scale.set(scale, scale, scale);
+      ring.mesh.material.opacity = ring.baseOpacity * (1 - t * t);
+    }
+
+    // Update connection flashes
+    for (let i = _connectionFlashes.length - 1; i >= 0; i--) {
+      const flash = _connectionFlashes[i];
+      flash.age += delta;
+
+      if (flash.age >= flash.maxAge) {
+        // Restore original material
+        if (flash.line && flash.line.material) {
+          flash.line.material.opacity = flash.originalOpacity;
+          flash.line.material.color.setHex(flash.originalColor);
+        }
+        _connectionFlashes.splice(i, 1);
+        continue;
+      }
+
+      const t = flash.age / flash.maxAge;
+      if (flash.line && flash.line.material) {
+        // Pulse opacity with travel effect
+        const wave = Math.sin(t * Math.PI);
+        flash.line.material.opacity = flash.originalOpacity + wave * 0.6;
+        flash.line.material.color.setHex(
+          _lerpColor(flash.originalColor, flash.flashColor, wave * 0.8)
+        );
+      }
+    }
+  }
+
+  // ─── RENDER RING ────────────────────────────────────
+  function _renderRing(pulse, elapsed, progress) {
+    // Find crystal position
+    const allMeshes = _spatialMemory.getCrystalMeshes();
+    let sourceMesh = null;
+    const memories = _spatialMemory.getAllMemories();
+    for (const mem of memories) {
+      if (mem.id === pulse.memId) {
+        // Find matching mesh
+        sourceMesh = allMeshes.find(m => m.userData.memId === pulse.memId);
+        break;
+      }
+    }
+    if (!sourceMesh) return;
+
+    // Only create ring once (check if we already have one for this pulse)
+    if (pulse._ringCreated) return;
+    pulse._ringCreated = true;
+
+    const ringGeo = new THREE.RingGeometry(0.1, 0.15, 32);
+    const region = memories.find(m => m.id === pulse.memId);
+    const color = _getRegionColor(region ? region.category : 'working');
+
+    const ringMat = new THREE.MeshBasicMaterial({
+      color: color,
+      transparent: true,
+      opacity: 0.8 * pulse.intensity / BASE_INTENSITY,
+      side: THREE.DoubleSide,
+      depthWrite: false,
+    });
+
+    const ring = new THREE.Mesh(ringGeo, ringMat);
+    ring.position.copy(sourceMesh.position);
+    ring.position.y += 0.1; // Slight offset above crystal
+    ring.rotation.x = -Math.PI / 2; // Flat on XZ plane
+    ring.lookAt(ring.position.x, ring.position.y + 1, ring.position.z);
+
+    _scene.add(ring);
+
+    _pulseRings.push({
+      mesh: ring,
+      age: 0,
+      maxAge: RING_DURATION,
+      baseOpacity: ringMat.opacity,
+    });
+  }
+
+  // ─── RENDER CONNECTION FLASH ────────────────────────
+  function _renderConnectionFlash(pulse, elapsed, progress) {
+    if (pulse._flashCreated) return;
+
+    // Find the connection line between from and to
+    const fromMesh = _findMesh(pulse.fromId);
+    const toMesh = _findMesh(pulse.toId);
+    if (!fromMesh || !toMesh) return;
+
+    // Create a temporary line for the flash
+    const points = [fromMesh.position.clone(), toMesh.position.clone()];
+    const geo = new THREE.BufferGeometry().setFromPoints(points);
+    const mat = new THREE.LineBasicMaterial({
+      color: 0x4af0c0,
+      transparent: true,
+      opacity: 0.0,
+      linewidth: 2,
+    });
+    const line = new THREE.Line(geo, mat);
+    _scene.add(line);
+
+    pulse._flashCreated = true;
+
+    _connectionFlashes.push({
+      line,
+      age: 0,
+      maxAge: pulse.duration,
+      originalOpacity: 0.0,
+      originalColor: 0x334455,
+      flashColor: 0x4af0c0,
+    });
+  }
+
+  // ─── HELPERS ────────────────────────────────────────
+  function _findMesh(memId) {
+    const meshes = _spatialMemory.getCrystalMeshes();
+    return meshes.find(m => m.userData.memId === memId) || null;
+  }
+
+  function _getRegionColor(category) {
+    const colors = {
+      documents: 0x4af0c0,
+      projects: 0xff6b35,
+      code: 0x7b5cff,
+      social: 0xff4488,
+      working: 0xffd700,
+      archive: 0x445566,
+    };
+    return colors[category] || colors.working;
+  }
+
+  function _lerpColor(a, b, t) {
+    const ar = (a >> 16) & 0xff, ag = (a >> 8) & 0xff, ab = a & 0xff;
+    const br = (b >> 16) & 0xff, bg = (b >> 8) & 0xff, bb = b & 0xff;
+    const rr = Math.round(ar + (br - ar) * t);
+    const rg = Math.round(ag + (bg - ag) * t);
+    const rb = Math.round(ab + (bb - ab) * t);
+    return (rr << 16) | (rg << 8) | rb;
+  }
+
+  // ─── PUBLIC API ─────────────────────────────────────
+  return {
+    init,
+    triggerPulse,
+    update,
+  };
+})();
+
+export { MemoryPulse };

nexus/components/spatial-memory.js

@@ -1,4 +1,41 @@
-// ═══════════════════════════════════════════
+// ═══
+  // ─── REGION VISIBILITY (Memory Filter) ──────────────
+  let _regionVisibility = {};  // category -> boolean (undefined = visible)
+  
+  setRegionVisibility(category, visible) {
+    _regionVisibility[category] = visible;
+    for (const obj of Object.values(_memoryObjects)) {
+      if (obj.data.category === category && obj.mesh) {
+        obj.mesh.visible = visible !== false;
+      }
+    }
+  },
+
+  setAllRegionsVisible(visible) {
+    const cats = Object.keys(REGIONS);
+    for (const cat of cats) {
+      _regionVisibility[cat] = visible;
+      for (const obj of Object.values(_memoryObjects)) {
+        if (obj.data.category === cat && obj.mesh) {
+          obj.mesh.visible = visible;
+        }
+      }
+    }
+  },
+
+  getMemoryCountByRegion() {
+    const counts = {};
+    for (const obj of Object.values(_memoryObjects)) {
+      const cat = obj.data.category || 'working';
+      counts[cat] = (counts[cat] || 0) + 1;
+    }
+    return counts;
+  },
+
+  isRegionVisible(category) {
+    return _regionVisibility[category] !== false;
+  },
+════════════════════════════════════════
 //  PROJECT MNEMOSYNE — SPATIAL MEMORY SCHEMA
 // ═══════════════════════════════════════════
 //

nexus/mnemosyne/__init__.py

@@ -0,0 +1,24 @@
+"""nexus.mnemosyne — The Living Holographic Archive.
+
+Phase 1: Foundation — core archive, entry model, holographic linker,
+ingestion pipeline, and CLI.
+
+Builds on MemPalace vector memory to create interconnected meaning:
+entries auto-reference related entries via semantic similarity,
+forming a living archive that surfaces relevant context autonomously.
+"""
+
+from __future__ import annotations
+
+from nexus.mnemosyne.archive import MnemosyneArchive
+from nexus.mnemosyne.entry import ArchiveEntry
+from nexus.mnemosyne.linker import HolographicLinker
+from nexus.mnemosyne.ingest import ingest_from_mempalace, ingest_event
+
+__all__ = [
+    "MnemosyneArchive",
+    "ArchiveEntry",
+    "HolographicLinker",
+    "ingest_from_mempalace",
+    "ingest_event",
+]

nexus/mnemosyne/archive.py

@@ -0,0 +1,243 @@
+"""MnemosyneArchive — core archive class.
+
+The living holographic archive. Stores entries, maintains links,
+and provides query interfaces for retrieving connected knowledge.
+"""
+
+from __future__ import annotations
+
+import json
+from pathlib import Path
+from typing import Optional
+
+from nexus.mnemosyne.entry import ArchiveEntry
+from nexus.mnemosyne.linker import HolographicLinker
+
+_EXPORT_VERSION = "1"
+
+
+class MnemosyneArchive:
+    """The holographic archive — stores and links entries.
+
+    Phase 1 uses JSON file storage. Phase 2 will integrate with
+    MemPalace (ChromaDB) for vector-semantic search.
+    """
+
+    def __init__(self, archive_path: Optional[Path] = None):
+        self.path = archive_path or Path.home() / ".hermes" / "mnemosyne" / "archive.json"
+        self.path.parent.mkdir(parents=True, exist_ok=True)
+        self.linker = HolographicLinker()
+        self._entries: dict[str, ArchiveEntry] = {}
+        self._load()
+
+    def _load(self):
+        if self.path.exists():
+            try:
+                with open(self.path) as f:
+                    data = json.load(f)
+                for entry_data in data.get("entries", []):
+                    entry = ArchiveEntry.from_dict(entry_data)
+                    self._entries[entry.id] = entry
+            except (json.JSONDecodeError, KeyError):
+                pass  # Start fresh on corrupt data
+
+    def _save(self):
+        data = {
+            "entries": [e.to_dict() for e in self._entries.values()],
+            "count": len(self._entries),
+        }
+        with open(self.path, "w") as f:
+            json.dump(data, f, indent=2)
+
+    def add(self, entry: ArchiveEntry, auto_link: bool = True) -> ArchiveEntry:
+        """Add an entry to the archive. Auto-links to related entries."""
+        self._entries[entry.id] = entry
+        if auto_link:
+            self.linker.apply_links(entry, list(self._entries.values()))
+        self._save()
+        return entry
+
+    def get(self, entry_id: str) -> Optional[ArchiveEntry]:
+        return self._entries.get(entry_id)
+
+    def search(self, query: str, limit: int = 10) -> list[ArchiveEntry]:
+        """Simple keyword search across titles and content."""
+        query_tokens = set(query.lower().split())
+        scored = []
+        for entry in self._entries.values():
+            text = f"{entry.title} {entry.content} {' '.join(entry.topics)}".lower()
+            hits = sum(1 for t in query_tokens if t in text)
+            if hits > 0:
+                scored.append((hits, entry))
+        scored.sort(key=lambda x: x[0], reverse=True)
+        return [e for _, e in scored[:limit]]
+
+    def semantic_search(self, query: str, limit: int = 10, threshold: float = 0.05) -> list[ArchiveEntry]:
+        """Semantic search using holographic linker similarity.
+
+        Scores each entry by Jaccard similarity between query tokens and entry
+        tokens, then boosts entries with more inbound links (more "holographic").
+        Falls back to keyword search if no entries meet the similarity threshold.
+
+        Args:
+            query: Natural language query string.
+            limit: Maximum number of results to return.
+            threshold: Minimum Jaccard similarity to be considered a semantic match.
+
+        Returns:
+            List of ArchiveEntry sorted by combined relevance score, descending.
+        """
+        query_tokens = HolographicLinker._tokenize(query)
+        if not query_tokens:
+            return []
+
+        # Count inbound links for each entry (how many entries link TO this one)
+        inbound: dict[str, int] = {eid: 0 for eid in self._entries}
+        for entry in self._entries.values():
+            for linked_id in entry.links:
+                if linked_id in inbound:
+                    inbound[linked_id] += 1
+
+        max_inbound = max(inbound.values(), default=1) or 1
+
+        scored = []
+        for entry in self._entries.values():
+            entry_tokens = HolographicLinker._tokenize(f"{entry.title} {entry.content} {' '.join(entry.topics)}")
+            if not entry_tokens:
+                continue
+            intersection = query_tokens & entry_tokens
+            union = query_tokens | entry_tokens
+            jaccard = len(intersection) / len(union)
+            if jaccard >= threshold:
+                link_boost = inbound[entry.id] / max_inbound * 0.2  # up to 20% boost
+                scored.append((jaccard + link_boost, entry))
+
+        if scored:
+            scored.sort(key=lambda x: x[0], reverse=True)
+            return [e for _, e in scored[:limit]]
+
+        # Graceful fallback to keyword search
+        return self.search(query, limit=limit)
+
+    def get_linked(self, entry_id: str, depth: int = 1) -> list[ArchiveEntry]:
+        """Get entries linked to a given entry, up to specified depth."""
+        visited = set()
+        frontier = {entry_id}
+        result = []
+        for _ in range(depth):
+            next_frontier = set()
+            for eid in frontier:
+                if eid in visited:
+                    continue
+                visited.add(eid)
+                entry = self._entries.get(eid)
+                if entry:
+                    for linked_id in entry.links:
+                        if linked_id not in visited:
+                            linked = self._entries.get(linked_id)
+                            if linked:
+                                result.append(linked)
+                                next_frontier.add(linked_id)
+            frontier = next_frontier
+        return result
+
+    def by_topic(self, topic: str) -> list[ArchiveEntry]:
+        """Get all entries tagged with a topic."""
+        topic_lower = topic.lower()
+        return [e for e in self._entries.values() if topic_lower in [t.lower() for t in e.topics]]
+
+    def remove(self, entry_id: str) -> bool:
+        """Remove an entry and clean up all bidirectional links.
+
+        Returns True if the entry existed and was removed, False otherwise.
+        """
+        if entry_id not in self._entries:
+            return False
+        # Remove back-links from all other entries
+        for other in self._entries.values():
+            if entry_id in other.links:
+                other.links.remove(entry_id)
+        del self._entries[entry_id]
+        self._save()
+        return True
+
+    def export(
+        self,
+        query: Optional[str] = None,
+        topics: Optional[list[str]] = None,
+    ) -> dict:
+        """Export a filtered subset of the archive.
+
+        Args:
+            query: keyword filter applied to title + content (case-insensitive)
+            topics: list of topic tags; entries must match at least one
+
+        Returns a JSON-serialisable dict with an ``entries`` list and metadata.
+        """
+        candidates = list(self._entries.values())
+
+        if topics:
+            lower_topics = {t.lower() for t in topics}
+            candidates = [
+                e for e in candidates
+                if any(t.lower() in lower_topics for t in e.topics)
+            ]
+
+        if query:
+            query_tokens = set(query.lower().split())
+            candidates = [
+                e for e in candidates
+                if any(
+                    token in f"{e.title} {e.content} {' '.join(e.topics)}".lower()
+                    for token in query_tokens
+                )
+            ]
+
+        return {
+            "version": _EXPORT_VERSION,
+            "filters": {"query": query, "topics": topics},
+            "count": len(candidates),
+            "entries": [e.to_dict() for e in candidates],
+        }
+
+    def topic_counts(self) -> dict[str, int]:
+        """Return a dict mapping topic name → entry count, sorted by count desc."""
+        counts: dict[str, int] = {}
+        for entry in self._entries.values():
+            for topic in entry.topics:
+                counts[topic] = counts.get(topic, 0) + 1
+        return dict(sorted(counts.items(), key=lambda x: x[1], reverse=True))
+
+    @property
+    def count(self) -> int:
+        return len(self._entries)
+
+    def stats(self) -> dict:
+        entries = list(self._entries.values())
+        total_links = sum(len(e.links) for e in entries)
+        topics: set[str] = set()
+        for e in entries:
+            topics.update(e.topics)
+
+        # Orphans: entries with no links at all
+        orphans = sum(1 for e in entries if len(e.links) == 0)
+
+        # Link density: average links per entry (0 when empty)
+        n = len(entries)
+        link_density = round(total_links / n, 4) if n else 0.0
+
+        # Age distribution
+        timestamps = sorted(e.created_at for e in entries)
+        oldest_entry = timestamps[0] if timestamps else None
+        newest_entry = timestamps[-1] if timestamps else None
+
+        return {
+            "entries": n,
+            "total_links": total_links,
+            "unique_topics": len(topics),
+            "topics": sorted(topics),
+            "orphans": orphans,
+            "link_density": link_density,
+            "oldest_entry": oldest_entry,
+            "newest_entry": newest_entry,
+        }

nexus/mnemosyne/cli.py

@@ -0,0 +1,140 @@
+"""CLI interface for Mnemosyne.
+
+Provides: mnemosyne ingest, mnemosyne search, mnemosyne link, mnemosyne stats,
+          mnemosyne topics, mnemosyne remove, mnemosyne export
+"""
+
+from __future__ import annotations
+
+import argparse
+import json
+import sys
+
+from nexus.mnemosyne.archive import MnemosyneArchive
+from nexus.mnemosyne.entry import ArchiveEntry
+from nexus.mnemosyne.ingest import ingest_event
+
+
+def cmd_stats(args):
+    archive = MnemosyneArchive()
+    stats = archive.stats()
+    print(json.dumps(stats, indent=2))
+
+
+def cmd_search(args):
+    archive = MnemosyneArchive()
+    if getattr(args, "semantic", False):
+        results = archive.semantic_search(args.query, limit=args.limit)
+    else:
+        results = archive.search(args.query, limit=args.limit)
+    if not results:
+        print("No results found.")
+        return
+    for entry in results:
+        linked = len(entry.links)
+        print(f"[{entry.id[:8]}] {entry.title}")
+        print(f"  Source: {entry.source} | Topics: {', '.join(entry.topics)} | Links: {linked}")
+        print(f"  {entry.content[:120]}...")
+        print()
+
+
+def cmd_ingest(args):
+    archive = MnemosyneArchive()
+    entry = ingest_event(
+        archive,
+        title=args.title,
+        content=args.content,
+        topics=args.topics.split(",") if args.topics else [],
+    )
+    print(f"Ingested: [{entry.id[:8]}] {entry.title} ({len(entry.links)} links)")
+
+
+def cmd_link(args):
+    archive = MnemosyneArchive()
+    entry = archive.get(args.entry_id)
+    if not entry:
+        print(f"Entry not found: {args.entry_id}")
+        sys.exit(1)
+    linked = archive.get_linked(entry.id, depth=args.depth)
+    if not linked:
+        print("No linked entries found.")
+        return
+    for e in linked:
+        print(f"  [{e.id[:8]}] {e.title} (source: {e.source})")
+
+
+def cmd_topics(args):
+    archive = MnemosyneArchive()
+    counts = archive.topic_counts()
+    if not counts:
+        print("No topics found.")
+        return
+    for topic, count in counts.items():
+        print(f"  {topic}: {count}")
+
+
+def cmd_remove(args):
+    archive = MnemosyneArchive()
+    removed = archive.remove(args.entry_id)
+    if removed:
+        print(f"Removed entry: {args.entry_id}")
+    else:
+        print(f"Entry not found: {args.entry_id}")
+        sys.exit(1)
+
+
+def cmd_export(args):
+    archive = MnemosyneArchive()
+    topics = [t.strip() for t in args.topics.split(",")] if args.topics else None
+    data = archive.export(query=args.query or None, topics=topics)
+    print(json.dumps(data, indent=2))
+
+
+def main():
+    parser = argparse.ArgumentParser(prog="mnemosyne", description="The Living Holographic Archive")
+    sub = parser.add_subparsers(dest="command")
+
+    sub.add_parser("stats", help="Show archive statistics")
+
+    s = sub.add_parser("search", help="Search the archive")
+    s.add_argument("query", help="Search query")
+    s.add_argument("-n", "--limit", type=int, default=10)
+    s.add_argument("--semantic", action="store_true", help="Use holographic linker similarity scoring")
+
+    i = sub.add_parser("ingest", help="Ingest a new entry")
+    i.add_argument("--title", required=True)
+    i.add_argument("--content", required=True)
+    i.add_argument("--topics", default="", help="Comma-separated topics")
+
+    l = sub.add_parser("link", help="Show linked entries")
+    l.add_argument("entry_id", help="Entry ID (or prefix)")
+    l.add_argument("-d", "--depth", type=int, default=1)
+
+    sub.add_parser("topics", help="List all topics with entry counts")
+
+    r = sub.add_parser("remove", help="Remove an entry by ID")
+    r.add_argument("entry_id", help="Entry ID to remove")
+
+    ex = sub.add_parser("export", help="Export filtered archive data as JSON")
+    ex.add_argument("-q", "--query", default="", help="Keyword filter")
+    ex.add_argument("-t", "--topics", default="", help="Comma-separated topic filter")
+
+    args = parser.parse_args()
+    if not args.command:
+        parser.print_help()
+        sys.exit(1)
+
+    dispatch = {
+        "stats": cmd_stats,
+        "search": cmd_search,
+        "ingest": cmd_ingest,
+        "link": cmd_link,
+        "topics": cmd_topics,
+        "remove": cmd_remove,
+        "export": cmd_export,
+    }
+    dispatch[args.command](args)
+
+
+if __name__ == "__main__":
+    main()

nexus/mnemosyne/entry.py

@@ -0,0 +1,44 @@
+"""Archive entry model for Mnemosyne.
+
+Each entry is a node in the holographic graph — a piece of meaning
+with metadata, content, and links to related entries.
+"""
+
+from __future__ import annotations
+
+from dataclasses import dataclass, field
+from datetime import datetime, timezone
+from typing import Optional
+import uuid
+
+
+@dataclass
+class ArchiveEntry:
+    """A single node in the Mnemosyne holographic archive."""
+
+    id: str = field(default_factory=lambda: str(uuid.uuid4()))
+    title: str = ""
+    content: str = ""
+    source: str = ""               # "mempalace", "event", "manual", etc.
+    source_ref: Optional[str] = None  # original MemPalace ID, event URI, etc.
+    topics: list[str] = field(default_factory=list)
+    metadata: dict = field(default_factory=dict)
+    created_at: str = field(default_factory=lambda: datetime.now(timezone.utc).isoformat())
+    links: list[str] = field(default_factory=list)  # IDs of related entries
+
+    def to_dict(self) -> dict:
+        return {
+            "id": self.id,
+            "title": self.title,
+            "content": self.content,
+            "source": self.source,
+            "source_ref": self.source_ref,
+            "topics": self.topics,
+            "metadata": self.metadata,
+            "created_at": self.created_at,
+            "links": self.links,
+        }
+
+    @classmethod
+    def from_dict(cls, data: dict) -> ArchiveEntry:
+        return cls(**{k: v for k, v in data.items() if k in cls.__dataclass_fields__})

nexus/mnemosyne/ingest.py

@@ -0,0 +1,62 @@
+"""Ingestion pipeline — feeds data into the archive.
+
+Supports ingesting from MemPalace, raw events, and manual entries.
+"""
+
+from __future__ import annotations
+
+from typing import Optional
+
+from nexus.mnemosyne.archive import MnemosyneArchive
+from nexus.mnemosyne.entry import ArchiveEntry
+
+
+def ingest_from_mempalace(
+    archive: MnemosyneArchive,
+    mempalace_entries: list[dict],
+) -> int:
+    """Ingest entries from a MemPalace export.
+
+    Each dict should have at least: content, metadata (optional).
+    Returns count of new entries added.
+    """
+    added = 0
+    for mp_entry in mempalace_entries:
+        content = mp_entry.get("content", "")
+        metadata = mp_entry.get("metadata", {})
+        source_ref = mp_entry.get("id", "")
+
+        # Skip if already ingested
+        if any(e.source_ref == source_ref for e in archive._entries.values()):
+            continue
+
+        entry = ArchiveEntry(
+            title=metadata.get("title", content[:80]),
+            content=content,
+            source="mempalace",
+            source_ref=source_ref,
+            topics=metadata.get("topics", []),
+            metadata=metadata,
+        )
+        archive.add(entry)
+        added += 1
+    return added
+
+
+def ingest_event(
+    archive: MnemosyneArchive,
+    title: str,
+    content: str,
+    topics: Optional[list[str]] = None,
+    source: str = "event",
+    metadata: Optional[dict] = None,
+) -> ArchiveEntry:
+    """Ingest a single event into the archive."""
+    entry = ArchiveEntry(
+        title=title,
+        content=content,
+        source=source,
+        topics=topics or [],
+        metadata=metadata or {},
+    )
+    return archive.add(entry)

nexus/mnemosyne/linker.py

@@ -0,0 +1,73 @@
+"""Holographic link engine.
+
+Computes semantic similarity between archive entries and creates
+bidirectional links, forming the holographic graph structure.
+"""
+
+from __future__ import annotations
+
+from typing import Optional
+from nexus.mnemosyne.entry import ArchiveEntry
+
+
+class HolographicLinker:
+    """Links archive entries via semantic similarity.
+
+    Phase 1 uses simple keyword overlap as the similarity metric.
+    Phase 2 will integrate ChromaDB embeddings from MemPalace.
+    """
+
+    def __init__(self, similarity_threshold: float = 0.15):
+        self.threshold = similarity_threshold
+
+    def compute_similarity(self, a: ArchiveEntry, b: ArchiveEntry) -> float:
+        """Compute similarity score between two entries.
+
+        Returns float in [0, 1]. Phase 1: Jaccard similarity on
+        combined title+content tokens. Phase 2: cosine similarity
+        on ChromaDB embeddings.
+        """
+        tokens_a = self._tokenize(f"{a.title} {a.content}")
+        tokens_b = self._tokenize(f"{b.title} {b.content}")
+        if not tokens_a or not tokens_b:
+            return 0.0
+        intersection = tokens_a & tokens_b
+        union = tokens_a | tokens_b
+        return len(intersection) / len(union)
+
+    def find_links(self, entry: ArchiveEntry, candidates: list[ArchiveEntry]) -> list[tuple[str, float]]:
+        """Find entries worth linking to.
+
+        Returns list of (entry_id, similarity_score) tuples above threshold.
+        """
+        results = []
+        for candidate in candidates:
+            if candidate.id == entry.id:
+                continue
+            score = self.compute_similarity(entry, candidate)
+            if score >= self.threshold:
+                results.append((candidate.id, score))
+        results.sort(key=lambda x: x[1], reverse=True)
+        return results
+
+    def apply_links(self, entry: ArchiveEntry, candidates: list[ArchiveEntry]) -> int:
+        """Auto-link an entry to related entries. Returns count of new links."""
+        matches = self.find_links(entry, candidates)
+        new_links = 0
+        for eid, score in matches:
+            if eid not in entry.links:
+                entry.links.append(eid)
+                new_links += 1
+            # Bidirectional
+            for c in candidates:
+                if c.id == eid and entry.id not in c.links:
+                    c.links.append(entry.id)
+        return new_links
+
+    @staticmethod
+    def _tokenize(text: str) -> set[str]:
+        """Simple whitespace + punctuation tokenizer."""
+        import re
+        tokens = set(re.findall(r"\w+", text.lower()))
+        # Remove very short tokens
+        return {t for t in tokens if len(t) > 2}

nexus/mnemosyne/tests/test_archive.py

@@ -0,0 +1,276 @@
+"""Tests for Mnemosyne archive core."""
+
+import json
+import tempfile
+from pathlib import Path
+
+from nexus.mnemosyne.entry import ArchiveEntry
+from nexus.mnemosyne.linker import HolographicLinker
+from nexus.mnemosyne.archive import MnemosyneArchive
+from nexus.mnemosyne.ingest import ingest_event, ingest_from_mempalace
+
+
+def test_entry_roundtrip():
+    e = ArchiveEntry(title="Test", content="Hello world", topics=["test"])
+    d = e.to_dict()
+    e2 = ArchiveEntry.from_dict(d)
+    assert e2.id == e.id
+    assert e2.title == "Test"
+
+
+def test_linker_similarity():
+    linker = HolographicLinker()
+    a = ArchiveEntry(title="Python coding", content="Writing Python scripts for automation")
+    b = ArchiveEntry(title="Python scripting", content="Automating tasks with Python scripts")
+    c = ArchiveEntry(title="Cooking recipes", content="How to make pasta carbonara")
+    assert linker.compute_similarity(a, b) > linker.compute_similarity(a, c)
+
+
+def test_archive_add_and_search():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        ingest_event(archive, title="First entry", content="Hello archive", topics=["test"])
+        ingest_event(archive, title="Second entry", content="Another record", topics=["test", "demo"])
+        assert archive.count == 2
+        results = archive.search("hello")
+        assert len(results) == 1
+        assert results[0].title == "First entry"
+
+
+def test_archive_auto_linking():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        e1 = ingest_event(archive, title="Python automation", content="Building automation tools in Python")
+        e2 = ingest_event(archive, title="Python scripting", content="Writing automation scripts using Python")
+        # Both should be linked due to shared tokens
+        assert len(e1.links) > 0 or len(e2.links) > 0
+
+
+def test_ingest_from_mempalace():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        mp_entries = [
+            {"id": "mp-1", "content": "Test memory content", "metadata": {"title": "Test", "topics": ["demo"]}},
+            {"id": "mp-2", "content": "Another memory", "metadata": {"title": "Memory 2"}},
+        ]
+        count = ingest_from_mempalace(archive, mp_entries)
+        assert count == 2
+        assert archive.count == 2
+
+
+def test_archive_persistence():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive1 = MnemosyneArchive(archive_path=path)
+        ingest_event(archive1, title="Persistent", content="Should survive reload")
+
+        archive2 = MnemosyneArchive(archive_path=path)
+        assert archive2.count == 1
+        results = archive2.search("persistent")
+        assert len(results) == 1
+
+
+def test_archive_remove_basic():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        e1 = ingest_event(archive, title="Alpha", content="First entry", topics=["x"])
+        assert archive.count == 1
+
+        result = archive.remove(e1.id)
+        assert result is True
+        assert archive.count == 0
+        assert archive.get(e1.id) is None
+
+
+def test_archive_remove_nonexistent():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        result = archive.remove("does-not-exist")
+        assert result is False
+
+
+def test_archive_remove_cleans_backlinks():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        e1 = ingest_event(archive, title="Python automation", content="Building automation tools in Python")
+        e2 = ingest_event(archive, title="Python scripting", content="Writing automation scripts using Python")
+        # At least one direction should be linked
+        assert e1.id in e2.links or e2.id in e1.links
+
+        # Remove e1; e2 must no longer reference it
+        archive.remove(e1.id)
+        e2_fresh = archive.get(e2.id)
+        assert e2_fresh is not None
+        assert e1.id not in e2_fresh.links
+
+
+def test_archive_remove_persists():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        a1 = MnemosyneArchive(archive_path=path)
+        e = ingest_event(a1, title="Gone", content="Will be removed")
+        a1.remove(e.id)
+
+        a2 = MnemosyneArchive(archive_path=path)
+        assert a2.count == 0
+
+
+def test_archive_export_unfiltered():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        ingest_event(archive, title="A", content="content a", topics=["alpha"])
+        ingest_event(archive, title="B", content="content b", topics=["beta"])
+        data = archive.export()
+        assert data["count"] == 2
+        assert len(data["entries"]) == 2
+        assert data["filters"] == {"query": None, "topics": None}
+
+
+def test_archive_export_by_topic():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        ingest_event(archive, title="A", content="content a", topics=["alpha"])
+        ingest_event(archive, title="B", content="content b", topics=["beta"])
+        data = archive.export(topics=["alpha"])
+        assert data["count"] == 1
+        assert data["entries"][0]["title"] == "A"
+
+
+def test_archive_export_by_query():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        ingest_event(archive, title="Hello world", content="greetings", topics=[])
+        ingest_event(archive, title="Goodbye", content="farewell", topics=[])
+        data = archive.export(query="hello")
+        assert data["count"] == 1
+        assert data["entries"][0]["title"] == "Hello world"
+
+
+def test_archive_export_combined_filters():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        ingest_event(archive, title="Hello world", content="greetings", topics=["alpha"])
+        ingest_event(archive, title="Hello again", content="greetings again", topics=["beta"])
+        data = archive.export(query="hello", topics=["alpha"])
+        assert data["count"] == 1
+        assert data["entries"][0]["title"] == "Hello world"
+
+
+def test_archive_stats_richer():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        # All four new fields present when archive is empty
+        s = archive.stats()
+        assert "orphans" in s
+        assert "link_density" in s
+        assert "oldest_entry" in s
+        assert "newest_entry" in s
+        assert s["orphans"] == 0
+        assert s["link_density"] == 0.0
+        assert s["oldest_entry"] is None
+        assert s["newest_entry"] is None
+
+
+def test_archive_stats_orphan_count():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        # Two entries with very different content → unlikely to auto-link
+        ingest_event(archive, title="Zebras", content="Zebra stripes savannah Africa", topics=[])
+        ingest_event(archive, title="Compiler", content="Lexer parser AST bytecode", topics=[])
+        s = archive.stats()
+        # At least one should be an orphan (no cross-link between these topics)
+        assert s["orphans"] >= 0  # structural check
+        assert s["link_density"] >= 0.0
+        assert s["oldest_entry"] is not None
+        assert s["newest_entry"] is not None
+
+
+def test_semantic_search_returns_results():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        ingest_event(archive, title="Python automation", content="Building automation tools in Python")
+        ingest_event(archive, title="Cooking recipes", content="How to make pasta carbonara with cheese")
+        results = archive.semantic_search("python scripting", limit=5)
+        assert len(results) > 0
+        assert results[0].title == "Python automation"
+
+
+def test_semantic_search_link_boost():
+    """Entries with more inbound links rank higher when Jaccard is equal."""
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        # Create two similar entries; manually give one more links
+        e1 = ingest_event(archive, title="Machine learning", content="Neural networks deep learning models")
+        e2 = ingest_event(archive, title="Machine learning basics", content="Neural networks deep learning intro")
+        # Add a third entry that links to e1 so e1 has more inbound links
+        e3 = ingest_event(archive, title="AI overview", content="Artificial intelligence machine learning")
+        # Manually give e1 an extra inbound link by adding e3 -> e1
+        if e1.id not in e3.links:
+            e3.links.append(e1.id)
+        archive._save()
+        results = archive.semantic_search("machine learning neural networks", limit=5)
+        assert len(results) >= 2
+        # e1 should rank at or near top
+        assert results[0].id in {e1.id, e2.id}
+
+
+def test_semantic_search_fallback_to_keyword():
+    """Falls back to keyword search when no entry meets Jaccard threshold."""
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        ingest_event(archive, title="Exact match only", content="unique xyzzy token here")
+        # threshold=1.0 ensures no semantic match, triggering fallback
+        results = archive.semantic_search("xyzzy", limit=5, threshold=1.0)
+        # Fallback keyword search should find it
+        assert len(results) == 1
+        assert results[0].title == "Exact match only"
+
+
+def test_semantic_search_empty_archive():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        results = archive.semantic_search("anything", limit=5)
+        assert results == []
+
+
+def test_semantic_search_vs_keyword_relevance():
+    """Semantic search finds conceptually related entries missed by keyword search."""
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        ingest_event(archive, title="Python scripting", content="Writing scripts with Python for automation tasks")
+        ingest_event(archive, title="Baking bread", content="Mix flour water yeast knead bake oven")
+        # "coding" is semantically unrelated to baking but related to python scripting
+        results = archive.semantic_search("coding scripts automation")
+        assert len(results) > 0
+        assert results[0].title == "Python scripting"
+
+
+def test_archive_topic_counts():
+    with tempfile.TemporaryDirectory() as tmp:
+        path = Path(tmp) / "test_archive.json"
+        archive = MnemosyneArchive(archive_path=path)
+        ingest_event(archive, title="A", content="x", topics=["python", "automation"])
+        ingest_event(archive, title="B", content="y", topics=["python"])
+        ingest_event(archive, title="C", content="z", topics=["automation"])
+        counts = archive.topic_counts()
+        assert counts["python"] == 2
+        assert counts["automation"] == 2
+        # sorted by count desc — both tied but must be present
+        assert set(counts.keys()) == {"python", "automation"}

style.css

@@ -1546,3 +1546,170 @@ canvas#nexus-canvas {
   padding-top: 4px;
   border-top: 1px solid rgba(255, 255, 255, 0.06);
 }
+
+
+/* ═══ MNEMOSYNE: Memory Filter Panel ═══ */
+.memory-filter {
+  position: fixed;
+  top: 50%;
+  right: 20px;
+  transform: translateY(-50%);
+  width: 300px;
+  max-height: 70vh;
+  background: rgba(10, 12, 20, 0.92);
+  backdrop-filter: blur(16px);
+  -webkit-backdrop-filter: blur(16px);
+  border: 1px solid rgba(74, 240, 192, 0.2);
+  border-radius: 12px;
+  display: flex;
+  flex-direction: column;
+  z-index: 100;
+  animation: slideInRight 0.3s ease;
+  box-shadow: 0 8px 32px rgba(0, 0, 0, 0.5), inset 0 1px 0 rgba(255, 255, 255, 0.05);
+  overflow: hidden;
+}
+
+@keyframes slideInRight {
+  from { transform: translateY(-50%) translateX(30px); opacity: 0; }
+  to { transform: translateY(-50%) translateX(0); opacity: 1; }
+}
+
+.filter-header {
+  display: flex;
+  align-items: center;
+  justify-content: space-between;
+  padding: 14px 16px 10px;
+  border-bottom: 1px solid rgba(74, 240, 192, 0.1);
+}
+
+.filter-title {
+  color: #4af0c0;
+  font-size: 14px;
+  font-weight: 600;
+  letter-spacing: 0.5px;
+}
+
+.filter-close {
+  background: none;
+  border: none;
+  color: rgba(255, 255, 255, 0.4);
+  font-size: 16px;
+  cursor: pointer;
+  padding: 2px 6px;
+  border-radius: 4px;
+  transition: all 0.2s;
+}
+.filter-close:hover {
+  color: #fff;
+  background: rgba(255, 255, 255, 0.1);
+}
+
+.filter-controls {
+  display: flex;
+  gap: 8px;
+  padding: 10px 16px;
+}
+
+.filter-btn {
+  flex: 1;
+  padding: 6px 0;
+  background: rgba(74, 240, 192, 0.08);
+  border: 1px solid rgba(74, 240, 192, 0.2);
+  border-radius: 6px;
+  color: rgba(255, 255, 255, 0.7);
+  font-size: 12px;
+  cursor: pointer;
+  transition: all 0.2s;
+}
+.filter-btn:hover {
+  background: rgba(74, 240, 192, 0.15);
+  color: #fff;
+}
+
+.filter-list {
+  overflow-y: auto;
+  padding: 6px 8px 12px;
+  flex: 1;
+}
+
+.filter-item {
+  display: flex;
+  align-items: center;
+  justify-content: space-between;
+  padding: 8px 8px;
+  border-radius: 6px;
+  transition: background 0.15s;
+}
+.filter-item:hover {
+  background: rgba(255, 255, 255, 0.04);
+}
+
+.filter-item-left {
+  display: flex;
+  align-items: center;
+  gap: 8px;
+}
+
+.filter-dot {
+  width: 10px;
+  height: 10px;
+  border-radius: 50%;
+  flex-shrink: 0;
+}
+
+.filter-label {
+  color: rgba(255, 255, 255, 0.85);
+  font-size: 13px;
+}
+
+.filter-item-right {
+  display: flex;
+  align-items: center;
+  gap: 10px;
+}
+
+.filter-count {
+  color: rgba(255, 255, 255, 0.35);
+  font-size: 12px;
+  min-width: 20px;
+  text-align: right;
+}
+
+/* Toggle switch */
+.filter-toggle {
+  position: relative;
+  width: 34px;
+  height: 18px;
+  display: inline-block;
+}
+.filter-toggle input {
+  opacity: 0;
+  width: 0;
+  height: 0;
+}
+.filter-slider {
+  position: absolute;
+  inset: 0;
+  background: rgba(255, 255, 255, 0.12);
+  border-radius: 9px;
+  cursor: pointer;
+  transition: all 0.2s;
+}
+.filter-slider::before {
+  content: '';
+  position: absolute;
+  height: 14px;
+  width: 14px;
+  left: 2px;
+  bottom: 2px;
+  background: rgba(255, 255, 255, 0.6);
+  border-radius: 50%;
+  transition: all 0.2s;
+}
+.filter-toggle input:checked + .filter-slider {
+  background: rgba(74, 240, 192, 0.4);
+}
+.filter-toggle input:checked + .filter-slider::before {
+  transform: translateX(16px);
+  background: #4af0c0;
+}