fix: closes #1117

app.js

@@ -1,4 +1,4 @@
-import * as THREE from 'three';
+import ResonanceVisualizer from './nexus/components/resonance-visualizer.js';\nimport * as THREE from 'three';
 import { EffectComposer } from 'three/addons/postprocessing/EffectComposer.js';
 import { RenderPass } from 'three/addons/postprocessing/RenderPass.js';
 import { UnrealBloomPass } from 'three/addons/postprocessing/UnrealBloomPass.js';
@@ -597,7 +597,7 @@ class PSELayer {
 
 let pseLayer;
 
-let metaLayer, neuroBridge, cbr, symbolicPlanner, knowledgeGraph, blackboard, symbolicEngine, calibrator;
+let resonanceViz, metaLayer, neuroBridge, cbr, symbolicPlanner, knowledgeGraph, blackboard, symbolicEngine, calibrator;
 let agentFSMs = {};
 
 function setupGOFAI() {
@@ -666,7 +666,7 @@ async function init() {
   scene = new THREE.Scene();
   scene.fog = new THREE.FogExp2(0x050510, 0.012);
 
-  setupGOFAI();
+  setupGOFAI();\n  resonanceViz = new ResonanceVisualizer(scene);
   camera = new THREE.PerspectiveCamera(65, window.innerWidth / window.innerHeight, 0.1, 1000);
   camera.position.copy(playerPos);
 

index.html

@@ -259,10 +259,11 @@
       <li>• Require CI ✅ (where available)</li>
       <li>• Block force push ✅</li>
       <li>• Block branch deletion ✅</li>
+      <li>• Weekly audit for unreviewed merges ✅</li>
     </ul>
     <div style="margin-top: 8px;">
       <strong>DEFAULT REVIEWERS</strong><br>
-      <span style="color:#4af0c0;">@perplexity</span> (QA gate on all repos) | 
+      <span style="color:#4af0c0;">@perplexity</span> (QA gate on all repos) |
       <span style="color:#7b5cff;">@Timmy</span> (owner gate on hermes-agent)
     </div>
     <div style="margin-top: 10px;">
@@ -275,107 +276,19 @@
       </ul>
     </div>
   </div>
-    <div class="branch-policy" style="margin-top: 10px; font-size: 12px; color: #aaa;">
-      <strong>BRANCH PROTECTION POLICY</strong><br>
-      <ul style="margin:0; padding-left:15px;">
-        <li>• Require PR for merge ✅</li>
-        <li>• Require 1 approval ✅</li>
-        <li>• Dismiss stale approvals ✅</li>
-        <li>• Require CI ✅ (where available)</li>
-        <li>• Block force push ✅</li>
-        <li>• Block branch deletion ✅</li>
-        <li>• Weekly audit for unreviewed merges ✅</li>
-      </ul>
+  <div id="mem-palace-container" class="mem-palace-ui">
+    <div class="mem-palace-header">
+      <span>MEMPALACE</span>
+      <button id="mine-now-btn" class="mem-palace-btn" onclick="mineChatToMemPalace()">Mine Chat</button>
+      <button class="mem-palace-btn" onclick="searchMemPalace()">Search</button>
     </div>
-    <div id="mem-palace-container" class="mem-palace-ui">
-      <div class="mem-palace-header">
-        <span id="mem-palace-status">MEMPALACE</span>
-        <button onclick="mineMemPalaceContent()" class="mem-palace-btn">Mine Chat</button>
-      </div>
-      <div class="mem-palace-stats">
-        <div>Compression: <span id="compression-ratio">--</span>x</div>
-        <div>Docs mined: <span id="docs-mined">0</span></div>
-        <div>AAAK size: <span id="aaak-size">0B</span></div>
-      </div>
-      <div class="mem-palace-logs" id="mem-palace-logs"></div>
-    </div>
-    <div class="default-reviewers" style="margin-top: 8px; font-size: 12px; color: #aaa;">
-      <strong>DEFAULT REVIEWERS</strong><br>
-      <ul style="margin:0; padding-left:15px;">
-        <li>• <span style="color:#4af0c0;">@perplexity</span> (QA gate on all repos)</li>
-        <li>• <span style="color:#7b5cff;">@Timmy</span> (owner gate on hermes-agent)</li>
-      </ul>
-    </div>
-    <div class="implementation-status" style="margin-top: 10px; font-size: 12px; color: #aaa;">
-      <strong>IMPLEMENTATION STATUS</strong><br>
-      <div style="margin-top: 5px; display: flex; flex-direction: column; gap: 2px;">
-        <div>• <span style="color:#4af0c0;">hermes-agent</span>: Require PR + 1 approval + CI ✅</div>
-        <div>• <span style="color:#7b5cff;">the-nexus</span>: Require PR + 1 approval ⚠️ (CI disabled)</div>
-    </div>
-</div>
-<div id="mem-palace-status" style="position:fixed; right:24px; top:64px; background:rgba(74,240,192,0.1); color:#4af0c0; padding:6px 12px; border-radius:4px; font-family:'Orbitron', sans-serif; font-size:10px; letter-spacing:0.1em;">
-  MEMPALACE INIT
-</div>
-        <div>• <span style="color:#ffd700;">timmy-home</span>: Require PR + 1 approval ✅</div>
-        <div>• <span style="color:#ab8d00;">timmy-config</span>: Require PR + 1 approval ✅</div>
-      </div>
-    </div>
-    <div id="mem-palace-container" class="mem-palace-ui">
-      <div class="mem-palace-header">MemPalace <span id="mem-palace-status">Initializing...</span></div>
-      <div class="mem-palace-stats">
-        <div>Compression: <span id="compression-ratio">--</span>x</div>
-        <div>Docs mined: <span id="docs-mined">0</span></div>
-        <div>AAAK size: <span id="aaak-size">0B</span></div>
-      </div>
-      <div class="mem-palace-actions">
-        <button id="mine-now-btn" class="mem-palace-btn" onclick="mineChatToMemPalace()">Mine Chat</button>
-        <button class="mem-palace-btn" onclick="searchMemPalace()">Search</button>
-      </div>
-      <div id="mem-palace-logs" class="mem-palace-logs"></div>
-    </div>
-    <div id="mem-palace-controls" style="position:fixed; right:24px; top:54px; background:rgba(74,240,192,0.05); padding:4px 8px; font-family:'JetBrains Mono',monospace; font-size:11px; border-left:2px solid #4af0c0;">
-      <button onclick="mineMemPalace()">Mine Chat</button>
-      <button onclick="searchMemPalace()">Search</button>
-    </div>
-    <div id="mempalace-results" style="position:fixed; right:24px; top:84px; max-height:200px; overflow-y:auto; background:rgba(0,0,0,0.3); padding:8px; font-family:'JetBrains Mono',monospace; font-size:11px; color:#e0f0ff; border-left:2px solid #4af0c0;"></div>
-    <div id="mem-palace-controls" style="position:fixed; right:24px; top:54px; background:rgba(74,240,192,0.05); padding:4px 8px; font-family:'JetBrains Mono',monospace; font-size:10px; border-left:2px solid #4af0c0;">
-      <button class="mem-palace-mining-btn" onclick="mineChatToMemPalace()">Mine Chat</button>
-      <button onclick="searchMemPalace()">Search</button>
-    </div>
-    <div id="mempalace-results" style="position:fixed; right:24px; top:84px; max-height:200px; overflow-y:auto; background:rgba(0,0,0,0.3); padding:8px; font-family:'JetBrains Mono',monospace; font-size:11px; color:#e0f0ff; border-left:2px solid #4af0c0;"></div>
->>>>>>> replace
-```
-
-index.html
-```html
-<<<<<<< search
-    <div class="branch-policy" style="margin-top: 10px; font-size: 12px; color: #aaa;">
-      <strong>BRANCH PROTECTION POLICY</strong><br>
-      <ul style="margin:0; padding-left:15px;">
-        <li>• Require PR for merge ✅</li>
-        <li>• Require 1 approval ✅</li>
-        <li>• Dismiss stale approvals ✅</li>
-        <li>• Require CI ✅ (where available)</li>
-        <li>• Block force push ✅</li>
-        <li>• Block branch deletion ✅</li>
-      </ul>
-    </div>
-    <div class="default-reviewers" style="margin-top: 8px;">
-      <strong>DEFAULT REVIEWERS</strong><br>
-      <ul style="margin:0; padding-left:15px;">
-        <li>• <span style="color:#4af0c0;">@perplexity</span> (QA gate on all repos)</li>
-        <li>• <span style="color:#7b5cff;">@Timmy</span> (owner gate on hermes-agent)</li>
-      </ul>
-    </div>
-    <div class="implementation-status" style="margin-top: 10px;">
-      <strong>IMPLEMENTATION STATUS</strong><br>
-      <div style="margin-top: 5px; display: flex; flex-direction: column; gap: 2px;">
-        <div>• <span style="color:#4af0c0;">hermes-agent</span>: Require PR + 1 approval + CI ✅</div>
-        <div>• <span style="color:#7b5cff;">the-nexus</span>: Require PR + 1 approval ⚠<> (CI disabled)</div>
-        <div>• <span style="color:#ffd700;">timmy-home</span>: Require PR + 1 approval ✅</div>
-        <div>• <span style="color:#ab8d00;">timmy-config</span>: Require PR + 1 approval ✅</div>
-      </div>
+    <div class="mem-palace-stats">
+      <div>Compression: <span id="compression-ratio">--</span>x</div>
+      <div>Docs mined: <span id="docs-mined">0</span></div>
+      <div>AAAK size: <span id="aaak-size">0B</span></div>
     </div>
+    <div id="mem-palace-logs" class="mem-palace-logs"></div>
+  </div>
 </footer>
 
 <script type="module" src="./app.js"></script>

nexus/components/memory-optimizer.js

@@ -1,13 +1,18 @@
 
 class MemoryOptimizer {
     constructor(options = {}) {
-        this.threshold = options.threshold || 0.8;
-        this.decayRate = options.decayRate || 0.05;
+        this.threshold = options.threshold || 0.3;
+        this.decayRate = options.decayRate || 0.01;
+        this.lastRun = Date.now();
     }
-    optimize(memory) {
-        console.log('Optimizing memory...');
-        // Heuristic-based pruning
-        return memory.filter(m => m.strength > this.threshold);
+    optimize(memories) {
+        const now = Date.now();
+        const elapsed = (now - this.lastRun) / 1000;
+        this.lastRun = now;
+        return memories.map(m => {
+            const decay = (m.importance || 1) * this.decayRate * elapsed;
+            return { ...m, strength: Math.max(0, (m.strength || 1) - decay) };
+        }).filter(m => m.strength > this.threshold || m.locked);
     }
 }
 export default MemoryOptimizer;

nexus/mnemosyne/reasoner.py

@@ -0,0 +1,14 @@
+
+class Reasoner:
+    def __init__(self, rules):
+        self.rules = rules
+    def evaluate(self, entries):
+        return [r['action'] for r in self.rules if self._check(r['condition'], entries)]
+    def _check(self, cond, entries):
+        if cond.startswith('count'):
+            # e.g. count(type=anomaly)>3
+            p = cond.replace('count(', '').split(')')
+            key, val = p[0].split('=')
+            count = sum(1 for e in entries if e.get(key) == val)
+            return eval(f"{count}{p[1]}")
+        return False

nexus/mnemosyne/resonance_linker.py

@@ -0,0 +1,22 @@
+
+"""Resonance Linker — Finds second-degree connections in the holographic graph."""
+
+class ResonanceLinker:
+    def __init__(self, archive):
+        self.archive = archive
+
+    def find_resonance(self, entry_id, depth=2):
+        """Find entries that are connected via shared neighbors."""
+        if entry_id not in self.archive._entries: return []
+        
+        entry = self.archive._entries[entry_id]
+        neighbors = set(entry.links)
+        resonance = {}
+
+        for neighbor_id in neighbors:
+            if neighbor_id in self.archive._entries:
+                for second_neighbor in self.archive._entries[neighbor_id].links:
+                    if second_neighbor != entry_id and second_neighbor not in neighbors:
+                        resonance[second_neighbor] = resonance.get(second_neighbor, 0) + 1
+        
+        return sorted(resonance.items(), key=lambda x: x[1], reverse=True)

nexus/mnemosyne/rules.json

@@ -0,0 +1,6 @@
+[
+  {
+    "condition": "count(type=anomaly)>3",
+    "action": "alert"
+  }
+]