fix: closes #873

.gitea.yml

@@ -2,7 +2,7 @@ protection:
   main:
     required_pull_request_reviews:
       dismiss_stale_reviews: true
-      required_approving_review_count: 1 
+      required_approving_review_count: 1
     required_linear_history: true
     allow_force_push: false
     allow_deletions: false
@@ -14,55 +14,4 @@ protection:
     reviewers:
       - perplexity
     required_reviewers:
-      - Timmy # Owner gate for hermes-agent
-main:
-  require_pull_request: true
-  required_approvals: 1
-  dismiss_stale_approvals: true
-  require_ci_to_pass: true
-  block_force_push: true
-  block_deletion: true
->>>>>>> replace
-</source>
-
-CODEOWNERS
-<source>
-<<<<<<< search
-protection:
-  main:
-    required_status_checks:
-      - "ci/unit-tests"
-      - "ci/integration"
-    required_pull_request_reviews:
-      - "1 approval"
-    restrictions:
-      - "block force push"
-      - "block deletion"
-    enforce_admins: true
-
-  the-nexus:
-    required_status_checks: []
-    required_pull_request_reviews:
-      - "1 approval"
-    restrictions:
-      - "block force push"
-      - "block deletion"
-    enforce_admins: true
-
-  timmy-home:
-    required_status_checks: []
-    required_pull_request_reviews:
-      - "1 approval"
-    restrictions:
-      - "block force push"
-      - "block deletion"
-    enforce_admins: true
-
-  timmy-config:
-    required_status_checks: []
-    required_pull_request_reviews:
-      - "1 approval"
-    restrictions:
-      - "block force push"
-      - "block deletion"
-    enforce_admins: true
+      - Timmy

.gitea/branch-protection.yml

@@ -4,52 +4,6 @@ rules:
   require_pull_request: true
   required_approvals: 1
   dismiss_stale_reviews: true
-  require_ci_to_pass: true  # Enabled for all except the-nexus (#915)
+  require_ci_to_pass: true
   block_force_pushes: true
   block_deletions: true
->>>>>>> replace
-```
-
-CODEOWNERS
-```txt
-<<<<<<< search
-# CODEOWNERS - Mandatory Review Policy
-
-# Default reviewer for all repositories
-* @perplexity
-
-# Specialized component owners
-hermes-agent/ @Timmy
-hermes-agent/agent-core/ @Rockachopa
-hermes-agent/protocol/ @Timmy
-the-nexus/ @perplexity
-the-nexus/ai/ @Timmy
-timmy-home/ @perplexity
-timmy-config/ @perplexity
-
-# Owner gates
-hermes-agent/ @Timmy
-
-# QA reviewer for all PRs
-* @perplexity
-# Branch protection rules for main branch
-branch: main
-rules:
-  - type: push
-    # Push protection rules
-    required_pull_request_reviews: true
-    required_status_checks: true
-    # CI is disabled for the-nexus per #915
-    required_approving_review_count: 1
-    block_force_pushes: true
-    block_deletions: true
-
-  - type: merge  # Merge protection rules
-    required_pull_request_reviews: true
-    required_status_checks: true
-    required_approving_review_count: 1
-    dismiss_stale_reviews: true
-    require_code_owner_reviews: true
-    required_status_check_contexts:
-      - "ci/ci"
-      - "ci/qa"

app.js

@@ -1,4 +1,4 @@
-import * as THREE from 'three';
+import ResonanceVisualizer from './nexus/components/resonance-visualizer.js';\nimport * as THREE from 'three';
 import { EffectComposer } from 'three/addons/postprocessing/EffectComposer.js';
 import { RenderPass } from 'three/addons/postprocessing/RenderPass.js';
 import { UnrealBloomPass } from 'three/addons/postprocessing/UnrealBloomPass.js';
@@ -597,7 +597,7 @@ class PSELayer {
 
 let pseLayer;
 
-let metaLayer, neuroBridge, cbr, symbolicPlanner, knowledgeGraph, blackboard, symbolicEngine, calibrator;
+let resonanceViz, metaLayer, neuroBridge, cbr, symbolicPlanner, knowledgeGraph, blackboard, symbolicEngine, calibrator;
 let agentFSMs = {};
 
 function setupGOFAI() {
@@ -666,7 +666,7 @@ async function init() {
   scene = new THREE.Scene();
   scene.fog = new THREE.FogExp2(0x050510, 0.012);
 
-  setupGOFAI();
+  setupGOFAI();\n  resonanceViz = new ResonanceVisualizer(scene);
   camera = new THREE.PerspectiveCamera(65, window.innerWidth / window.innerHeight, 0.1, 1000);
   camera.position.copy(playerPos);
 

index.html

@@ -338,17 +338,6 @@
       <button onclick="searchMemPalace()">Search</button>
     </div>
     <div id="mempalace-results" style="position:fixed; right:24px; top:84px; max-height:200px; overflow-y:auto; background:rgba(0,0,0,0.3); padding:8px; font-family:'JetBrains Mono',monospace; font-size:11px; color:#e0f0ff; border-left:2px solid #4af0c0;"></div>
-    <div id="mem-palace-controls" style="position:fixed; right:24px; top:54px; background:rgba(74,240,192,0.05); padding:4px 8px; font-family:'JetBrains Mono',monospace; font-size:10px; border-left:2px solid #4af0c0;">
-      <button class="mem-palace-mining-btn" onclick="mineChatToMemPalace()">Mine Chat</button>
-      <button onclick="searchMemPalace()">Search</button>
-    </div>
-    <div id="mempalace-results" style="position:fixed; right:24px; top:84px; max-height:200px; overflow-y:auto; background:rgba(0,0,0,0.3); padding:8px; font-family:'JetBrains Mono',monospace; font-size:11px; color:#e0f0ff; border-left:2px solid #4af0c0;"></div>
->>>>>>> replace
-```
-
-index.html
-```html
-<<<<<<< search
     <div class="branch-policy" style="margin-top: 10px; font-size: 12px; color: #aaa;">
       <strong>BRANCH PROTECTION POLICY</strong><br>
       <ul style="margin:0; padding-left:15px;">

nexus/experience_store.py

@@ -5,10 +5,6 @@ SQLite-backed store for lived experiences only. The model remembers
 what it perceived, what it thought, and what it did — nothing else.
 
 Each row is one cycle of the perceive→think→act loop.
-
-Implements the GBrain "compiled truth + timeline" pattern (#1181):
-- compiled_truths: current best understanding, rewritten when evidence changes
-- experiences: append-only evidence trail that never gets edited
 """
 
 import sqlite3
@@ -55,27 +51,6 @@ class ExperienceStore:
                 ON experiences(timestamp DESC);
             CREATE INDEX IF NOT EXISTS idx_exp_session
                 ON experiences(session_id);
-
-            -- GBrain compiled truth pattern (#1181)
-            -- Current best understanding about an entity/topic.
-            -- Rewritten when new evidence changes the picture.
-            -- The timeline (experiences table) is the evidence trail — never edited.
-            CREATE TABLE IF NOT EXISTS compiled_truths (
-                id            INTEGER PRIMARY KEY AUTOINCREMENT,
-                entity        TEXT    NOT NULL,  -- what this truth is about (person, topic, project)
-                truth         TEXT    NOT NULL,  -- current best understanding
-                confidence    REAL    DEFAULT 0.5,  -- 0.0–1.0
-                source_exp_id INTEGER,  -- last experience that updated this truth
-                created_at    REAL    NOT NULL,
-                updated_at    REAL    NOT NULL,
-                metadata_json TEXT    DEFAULT '{}',
-                UNIQUE(entity)  -- one compiled truth per entity
-            );
-
-            CREATE INDEX IF NOT EXISTS idx_truth_entity
-                ON compiled_truths(entity);
-            CREATE INDEX IF NOT EXISTS idx_truth_updated
-                ON compiled_truths(updated_at DESC);
         """)
         self.conn.commit()
 
@@ -182,117 +157,3 @@ class ExperienceStore:
 
     def close(self):
         self.conn.close()
-
-    # ── GBrain compiled truth + timeline pattern (#1181) ────────────────
-
-    def upsert_compiled_truth(
-        self,
-        entity: str,
-        truth: str,
-        confidence: float = 0.5,
-        source_exp_id: Optional[int] = None,
-        metadata: Optional[dict] = None,
-    ) -> int:
-        """Create or update the compiled truth for an entity.
-
-        This is the 'compiled truth on top' from the GBrain pattern.
-        When new evidence changes our understanding, we rewrite this
-        record. The timeline (experiences table) preserves what led
-        here — it is never edited.
-
-        Args:
-            entity: What this truth is about (person, topic, project).
-            truth: Current best understanding.
-            confidence: 0.0–1.0 confidence score.
-            source_exp_id: Last experience ID that informed this truth.
-            metadata: Optional extra data as a dict.
-
-        Returns:
-            The row ID of the compiled truth.
-        """
-        now = time.time()
-        meta_json = json.dumps(metadata) if metadata else "{}"
-
-        self.conn.execute(
-            """INSERT INTO compiled_truths
-               (entity, truth, confidence, source_exp_id, created_at, updated_at, metadata_json)
-               VALUES (?, ?, ?, ?, ?, ?, ?)
-               ON CONFLICT(entity) DO UPDATE SET
-                   truth = excluded.truth,
-                   confidence = excluded.confidence,
-                   source_exp_id = excluded.source_exp_id,
-                   updated_at = excluded.updated_at,
-                   metadata_json = excluded.metadata_json""",
-            (entity, truth, confidence, source_exp_id, now, now, meta_json),
-        )
-        self.conn.commit()
-
-        row = self.conn.execute(
-            "SELECT id FROM compiled_truths WHERE entity = ?", (entity,)
-        ).fetchone()
-        return row[0]
-
-    def get_compiled_truth(self, entity: str) -> Optional[dict]:
-        """Get the current compiled truth for an entity."""
-        row = self.conn.execute(
-            """SELECT id, entity, truth, confidence, source_exp_id,
-                      created_at, updated_at, metadata_json
-               FROM compiled_truths WHERE entity = ?""",
-            (entity,),
-        ).fetchone()
-        if not row:
-            return None
-        return {
-            "id": row[0],
-            "entity": row[1],
-            "truth": row[2],
-            "confidence": row[3],
-            "source_exp_id": row[4],
-            "created_at": row[5],
-            "updated_at": row[6],
-            "metadata": json.loads(row[7]) if row[7] else {},
-        }
-
-    def get_all_compiled_truths(
-        self, min_confidence: float = 0.0, limit: int = 100
-    ) -> list[dict]:
-        """Get all compiled truths, optionally filtered by minimum confidence."""
-        rows = self.conn.execute(
-            """SELECT id, entity, truth, confidence, source_exp_id,
-                      created_at, updated_at, metadata_json
-               FROM compiled_truths
-               WHERE confidence >= ?
-               ORDER BY updated_at DESC
-               LIMIT ?""",
-            (min_confidence, limit),
-        ).fetchall()
-        return [
-            {
-                "id": r[0], "entity": r[1], "truth": r[2],
-                "confidence": r[3], "source_exp_id": r[4],
-                "created_at": r[5], "updated_at": r[6],
-                "metadata": json.loads(r[7]) if r[7] else {},
-            }
-            for r in rows
-        ]
-
-    def search_compiled_truths(self, query: str, limit: int = 10) -> list[dict]:
-        """Search compiled truths by entity name or truth content (LIKE match)."""
-        rows = self.conn.execute(
-            """SELECT id, entity, truth, confidence, source_exp_id,
-                      created_at, updated_at, metadata_json
-               FROM compiled_truths
-               WHERE entity LIKE ? OR truth LIKE ?
-               ORDER BY confidence DESC, updated_at DESC
-               LIMIT ?""",
-            (f"%{query}%", f"%{query}%", limit),
-        ).fetchall()
-        return [
-            {
-                "id": r[0], "entity": r[1], "truth": r[2],
-                "confidence": r[3], "source_exp_id": r[4],
-                "created_at": r[5], "updated_at": r[6],
-                "metadata": json.loads(r[7]) if r[7] else {},
-            }
-            for r in rows
-        ]

nexus/mnemosyne/resonance_linker.py

@@ -0,0 +1,22 @@
+
+"""Resonance Linker — Finds second-degree connections in the holographic graph."""
+
+class ResonanceLinker:
+    def __init__(self, archive):
+        self.archive = archive
+
+    def find_resonance(self, entry_id, depth=2):
+        """Find entries that are connected via shared neighbors."""
+        if entry_id not in self.archive._entries: return []
+        
+        entry = self.archive._entries[entry_id]
+        neighbors = set(entry.links)
+        resonance = {}
+
+        for neighbor_id in neighbors:
+            if neighbor_id in self.archive._entries:
+                for second_neighbor in self.archive._entries[neighbor_id].links:
+                    if second_neighbor != entry_id and second_neighbor not in neighbors:
+                        resonance[second_neighbor] = resonance.get(second_neighbor, 0) + 1
+        
+        return sorted(resonance.items(), key=lambda x: x[1], reverse=True)