fix: refresh burn lane audit for #662

Merge PR #764: docs: MemPalace v3.0.0 integration — before/after evaluation (#568)

GENOME.md

@@ -1,141 +1,209 @@
-# GENOME.md — Timmy_Foundation/timmy-home
-
-Generated by `pipelines/codebase_genome.py`.
+# GENOME.md — the-nexus
 
 ## Project Overview
 
-Timmy Foundation's home repository for development operations and configurations.
+`the-nexus` is a hybrid repo that combines three layers in one codebase:
 
-- Text files indexed: 3004
-- Source and script files: 186
-- Test files: 28
-- Documentation files: 701
+1. A browser-facing world shell rooted in `index.html`, `boot.js`, `bootstrap.mjs`, `app.js`, `style.css`, `portals.json`, `vision.json`, `manifest.json`, and `gofai_worker.js`
+2. A Python realtime bridge centered on `server.py` plus harness code under `nexus/`
+3. A memory / fleet / operator layer spanning `mempalace/`, `mcp_servers/`, `multi_user_bridge.py`, and supporting scripts
 
-## Architecture
+The repo is not a clean single-purpose frontend and not just a backend harness. It is a mixed world/runtime/ops repository where browser rendering, WebSocket telemetry, MCP-driven game harnesses, and fleet memory tooling coexist.
+
+Grounded repo facts from this checkout:
+- Browser shell files exist at repo root: `index.html`, `app.js`, `style.css`, `manifest.json`, `gofai_worker.js`
+- Data/config files also live at repo root: `portals.json`, `vision.json`
+- Realtime bridge exists in `server.py`
+- Game harnesses exist in `nexus/morrowind_harness.py` and `nexus/bannerlord_harness.py`
+- Memory/fleet sync exists in `mempalace/tunnel_sync.py`
+- Desktop/game automation MCP servers exist in `mcp_servers/desktop_control_server.py` and `mcp_servers/steam_info_server.py`
+- Validation exists in `tests/test_browser_smoke.py`, `tests/test_portals_json.py`, `tests/test_index_html_integrity.py`, and `tests/test_repo_truth.py`
+
+The current architecture is best understood as a sovereign world shell plus operator/game harness backend, with accumulated documentation drift from multiple restoration and migration efforts.
+
+## Architecture Diagram
 
 ```mermaid
 graph TD
-  repo_root["repo"]
-  angband["angband"]
-  briefings["briefings"]
-  config["config"]
-  conftest["conftest"]
-  evennia["evennia"]
-  evennia_tools["evennia_tools"]
-  evolution["evolution"]
-  gemini_fallback_setup["gemini-fallback-setup"]
-  heartbeat["heartbeat"]
-  infrastructure["infrastructure"]
-  repo_root --> angband
-  repo_root --> briefings
-  repo_root --> config
-  repo_root --> conftest
-  repo_root --> evennia
-  repo_root --> evennia_tools
+    browser[Index HTML Shell\nindex.html -> boot.js -> bootstrap.mjs -> app.js]
+    assets[Root Assets\nstyle.css\nmanifest.json\ngofai_worker.js]
+    data[World Data\nportals.json\nvision.json]
+    ws[Realtime Bridge\nserver.py\nWebSocket broadcast hub]
+    gofai[In-browser GOFAI\nSymbolicEngine\nNeuroSymbolicBridge\nsetupGOFAI/updateGOFAI]
+    harnesses[Python Harnesses\nnexus/morrowind_harness.py\nnexus/bannerlord_harness.py]
+    mcp[MCP Adapters\nmcp_servers/desktop_control_server.py\nmcp_servers/steam_info_server.py]
+    memory[Memory + Fleet\nmempalace/tunnel_sync.py\nmempalace.js]
+    bridge[Operator / MUD Bridge\nmulti_user_bridge.py\ncommands/timmy_commands.py]
+    tests[Verification\ntests/test_browser_smoke.py\ntests/test_portals_json.py\ntests/test_repo_truth.py]
+    docs[Contracts + Drift Docs\nBROWSER_CONTRACT.md\nREADME.md\nCLAUDE.md\nINVESTIGATION_ISSUE_1145.md]
+
+    browser --> assets
+    browser --> data
+    browser --> gofai
+    browser --> ws
+    harnesses --> mcp
+    harnesses --> ws
+    bridge --> ws
+    memory --> ws
+    tests --> browser
+    tests --> data
+    tests --> docs
+    docs --> browser
 ```
 
-## Entry Points
+## Entry Points and Data Flow
 
-- `gemini-fallback-setup.sh` — operational script (`bash gemini-fallback-setup.sh`)
-- `morrowind/hud.sh` — operational script (`bash morrowind/hud.sh`)
-- `pipelines/codebase_genome.py` — python main guard (`python3 pipelines/codebase_genome.py`)
-- `scripts/auto_restart_agent.sh` — operational script (`bash scripts/auto_restart_agent.sh`)
-- `scripts/backup_pipeline.sh` — operational script (`bash scripts/backup_pipeline.sh`)
-- `scripts/big_brain_manager.py` — operational script (`python3 scripts/big_brain_manager.py`)
-- `scripts/big_brain_repo_audit.py` — operational script (`python3 scripts/big_brain_repo_audit.py`)
-- `scripts/codebase_genome_nightly.py` — operational script (`python3 scripts/codebase_genome_nightly.py`)
-- `scripts/detect_secrets.py` — operational script (`python3 scripts/detect_secrets.py`)
-- `scripts/dynamic_dispatch_optimizer.py` — operational script (`python3 scripts/dynamic_dispatch_optimizer.py`)
-- `scripts/emacs-fleet-bridge.py` — operational script (`python3 scripts/emacs-fleet-bridge.py`)
-- `scripts/emacs-fleet-poll.sh` — operational script (`bash scripts/emacs-fleet-poll.sh`)
+### Primary entry points
 
-## Data Flow
+- `index.html` — root browser entry point
+- `boot.js` — startup selector; `tests/boot.test.js` shows it chooses file-mode vs HTTP/module-mode and injects `bootstrap.mjs` when served over HTTP
+- `bootstrap.mjs` — module bootstrap for the browser shell
+- `app.js` — main browser runtime; owns world state, GOFAI wiring, metrics polling, and portal/UI logic
+- `server.py` — WebSocket broadcast bridge on `ws://0.0.0.0:8765`
+- `nexus/morrowind_harness.py` — GamePortal/MCP harness for OpenMW Morrowind
+- `nexus/bannerlord_harness.py` — GamePortal/MCP harness for Bannerlord
+- `mempalace/tunnel_sync.py` — pulls remote fleet closets into the local palace over HTTP
+- `multi_user_bridge.py` — HTTP bridge for multi-user chat/session integration
+- `mcp_servers/desktop_control_server.py` — stdio MCP server exposing screenshots/mouse/keyboard control
 
-1. Operators enter through `gemini-fallback-setup.sh`, `morrowind/hud.sh`, `pipelines/codebase_genome.py`.
-2. Core logic fans into top-level components: `angband`, `briefings`, `config`, `conftest`, `evennia`, `evennia_tools`.
-3. Validation is incomplete around `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py`, `timmy-local/cache/agent_cache.py`, `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py`, so changes there carry regression risk.
-4. Final artifacts land as repository files, docs, or runtime side effects depending on the selected entry point.
+### Data flow
+
+1. Browser startup begins at `index.html`
+2. `boot.js` decides whether the page is being served correctly; in HTTP mode it injects `bootstrap.mjs`
+3. `bootstrap.mjs` hands off to `app.js`
+4. `app.js` loads world configuration from `portals.json` and `vision.json`
+5. `app.js` constructs the Three.js scene and in-browser reasoning components, including `SymbolicEngine`, `NeuroSymbolicBridge`, `setupGOFAI()`, and `updateGOFAI()`
+6. Browser state and external runtimes connect through `server.py`, which broadcasts messages between connected clients
+7. Python harnesses (`nexus/morrowind_harness.py`, `nexus/bannerlord_harness.py`) spawn MCP subprocesses for desktop control / Steam metadata, capture state, execute actions, and feed telemetry into the Nexus bridge
+8. Memory/fleet tools like `mempalace/tunnel_sync.py` import remote palace data into local closets, extending what the operator/runtime layers can inspect
+9. Tests validate both the static browser contract and the higher-level repo-truth/memory contracts
+
+### Important repo-specific runtime facts
+
+- `portals.json` is a JSON array of portal/world/operator entries; examples in this checkout include `morrowind`, `bannerlord`, `workshop`, `archive`, `chapel`, and `courtyard`
+- `server.py` is a plain broadcast hub: clients send messages, the server forwards them to other connected clients
+- `nexus/morrowind_harness.py` and `nexus/bannerlord_harness.py` both implement a GamePortal pattern with MCP subprocess clients over stdio and WebSocket telemetry uplink
+- `mempalace/tunnel_sync.py` is not speculative; it is a real client that discovers remote wings, searches remote rooms, and writes `.closet.json` payloads locally
 
 ## Key Abstractions
 
-- `evennia/timmy_world/game.py` — classes `World`:91, `ActionSystem`:421, `TimmyAI`:539, `NPCAI`:550; functions `get_narrative_phase()`:55, `get_phase_transition_event()`:65
-- `evennia/timmy_world/world/game.py` — classes `World`:19, `ActionSystem`:326, `TimmyAI`:444, `NPCAI`:455; functions none detected
-- `timmy-world/game.py` — classes `World`:19, `ActionSystem`:349, `TimmyAI`:467, `NPCAI`:478; functions none detected
-- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — classes none detected; functions none detected
-- `uniwizard/self_grader.py` — classes `SessionGrade`:23, `WeeklyReport`:55, `SelfGrader`:74; functions `main()`:713
-- `uni-wizard/v3/intelligence_engine.py` — classes `ExecutionPattern`:27, `ModelPerformance`:44, `AdaptationEvent`:58, `PatternDatabase`:69; functions none detected
-- `scripts/know_thy_father/crossref_audit.py` — classes `ThemeCategory`:30, `Principle`:160, `MeaningKernel`:169, `CrossRefFinding`:178; functions `extract_themes_from_text()`:192, `parse_soul_md()`:206, `parse_kernels()`:264, `cross_reference()`:296, `generate_report()`:440, `main()`:561
-- `timmy-local/cache/agent_cache.py` — classes `CacheStats`:28, `LRUCache`:52, `ResponseCache`:94, `ToolCache`:205; functions none detected
+### Browser runtime
+
+- `app.js`
+  - Defines in-browser reasoning/state machinery, including `class SymbolicEngine`, `class NeuroSymbolicBridge`, `setupGOFAI()`, and `updateGOFAI()`
+  - Couples rendering, local symbolic reasoning, metrics polling, and portal/UI logic in one very large root module
+- `BROWSER_CONTRACT.md`
+  - Acts like an executable architecture contract for the browser surface
+  - Declares required files, DOM IDs, Three.js expectations, provenance rules, and WebSocket expectations
+
+### Realtime bridge
+
+- `server.py`
+  - Single hub abstraction: a WebSocket broadcast server maintaining a `clients` set and forwarding messages from one client to the others
+  - This is the seam between browser shell, harnesses, and external telemetry producers
+
+### GamePortal harness layer
+
+- `nexus/morrowind_harness.py`
+- `nexus/bannerlord_harness.py`
+  - Both define MCP client wrappers, `GameState` / `ActionResult`-style data classes, and an Observe-Decide-Act telemetry loop
+  - The harnesses are symmetric enough to be understood as reusable portal adapters with game-specific context injected on top
+
+### Memory / fleet layer
+
+- `mempalace/tunnel_sync.py`
+  - Encodes the fleet-memory sync client contract: discover wings, pull broad room queries, write closet files, support dry-run
+- `mempalace.js`
+  - Minimal browser/Electron bridge to MemPalace commands via `window.electronAPI.execPython(...)`
+  - Important because it shows a second memory integration surface distinct from the Python fleet sync path
+
+### Operator / interaction bridge
+
+- `multi_user_bridge.py`
+- `commands/timmy_commands.py`
+  - These bridge user-facing conversations or MUD/Evennia interactions back into Timmy/Nexus services
 
 ## API Surface
 
-- CLI: `bash gemini-fallback-setup.sh` — operational script (`gemini-fallback-setup.sh`)
-- CLI: `bash morrowind/hud.sh` — operational script (`morrowind/hud.sh`)
-- CLI: `python3 pipelines/codebase_genome.py` — python main guard (`pipelines/codebase_genome.py`)
-- CLI: `bash scripts/auto_restart_agent.sh` — operational script (`scripts/auto_restart_agent.sh`)
-- CLI: `bash scripts/backup_pipeline.sh` — operational script (`scripts/backup_pipeline.sh`)
-- CLI: `python3 scripts/big_brain_manager.py` — operational script (`scripts/big_brain_manager.py`)
-- CLI: `python3 scripts/big_brain_repo_audit.py` — operational script (`scripts/big_brain_repo_audit.py`)
-- CLI: `python3 scripts/codebase_genome_nightly.py` — operational script (`scripts/codebase_genome_nightly.py`)
-- Python: `get_narrative_phase()` from `evennia/timmy_world/game.py:55`
-- Python: `get_phase_transition_event()` from `evennia/timmy_world/game.py:65`
-- Python: `main()` from `uniwizard/self_grader.py:713`
+### Browser / static surface
 
-## Test Coverage Report
+- `index.html` served over HTTP
+- `boot.js` exports `bootPage()`; verified by `node --test tests/boot.test.js`
+- Data APIs are file-based inside the repo: `portals.json`, `vision.json`, `manifest.json`
 
-- Source and script files inspected: 186
-- Test files inspected: 28
-- Coverage gaps:
-  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — no matching test reference detected
-  - `timmy-local/cache/agent_cache.py` — no matching test reference detected
-  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py` — no matching test reference detected
-  - `twitter-archive/multimodal_pipeline.py` — no matching test reference detected
-  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/godmode_race.py` — no matching test reference detected
-  - `skills/productivity/google-workspace/scripts/google_api.py` — no matching test reference detected
-  - `wizards/allegro/home/skills/productivity/google-workspace/scripts/google_api.py` — no matching test reference detected
-  - `morrowind/pilot.py` — no matching test reference detected
-  - `morrowind/mcp_server.py` — no matching test reference detected
-  - `skills/research/domain-intel/scripts/domain_intel.py` — no matching test reference detected
-  - `wizards/allegro/home/skills/research/domain-intel/scripts/domain_intel.py` — no matching test reference detected
-  - `timmy-local/scripts/ingest.py` — no matching test reference detected
+### Network/runtime surface
 
-## Security Audit Findings
+- `python3 server.py`
+  - Starts the WebSocket bridge on port `8765`
+- `python3 l402_server.py`
+  - Local HTTP microservice for cost-estimate style responses
+- `python3 multi_user_bridge.py`
+  - Multi-user HTTP/chat bridge
 
-- [medium] `briefings/briefing_20260325.json:37` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"gitea_error": "Gitea 404: {\"errors\":null,\"message\":\"not found\",\"url\":\"http://143.198.27.163:3000/api/swagger\"}\n [http://143.198.27.163:3000/api/v1/repos/Timmy_Foundation/sovereign-orchestration/issues?state=open&type=issues&sort=created&direction=desc&limit=1&page=1]",`
-- [medium] `briefings/briefing_20260328.json:11` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"provider_base_url": "http://localhost:8081/v1",`
-- [medium] `briefings/briefing_20260329.json:11` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"provider_base_url": "http://localhost:8081/v1",`
-- [medium] `config.yaml:37` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `summary_base_url: http://localhost:11434/v1`
-- [medium] `config.yaml:47` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:52` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:57` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:62` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:67` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:77` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:82` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:174` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: http://localhost:11434/v1`
+### Harness / operator CLI surfaces
 
-## Dead Code Candidates
+- `python3 nexus/morrowind_harness.py`
+- `python3 nexus/bannerlord_harness.py`
+- `python3 mempalace/tunnel_sync.py --peer <url> [--dry-run] [--n N]`
+- `python3 mcp_servers/desktop_control_server.py`
+- `python3 mcp_servers/steam_info_server.py`
 
-- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — not imported by indexed Python modules and not referenced by tests
-- `timmy-local/cache/agent_cache.py` — not imported by indexed Python modules and not referenced by tests
-- `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py` — not imported by indexed Python modules and not referenced by tests
-- `twitter-archive/multimodal_pipeline.py` — not imported by indexed Python modules and not referenced by tests
-- `wizards/allegro/home/skills/red-teaming/godmode/scripts/godmode_race.py` — not imported by indexed Python modules and not referenced by tests
-- `skills/productivity/google-workspace/scripts/google_api.py` — not imported by indexed Python modules and not referenced by tests
-- `wizards/allegro/home/skills/productivity/google-workspace/scripts/google_api.py` — not imported by indexed Python modules and not referenced by tests
-- `morrowind/pilot.py` — not imported by indexed Python modules and not referenced by tests
-- `morrowind/mcp_server.py` — not imported by indexed Python modules and not referenced by tests
-- `skills/research/domain-intel/scripts/domain_intel.py` — not imported by indexed Python modules and not referenced by tests
+### Validation surface
 
-## Performance Bottleneck Analysis
+- `python3 -m pytest tests/test_portals_json.py tests/test_index_html_integrity.py tests/test_repo_truth.py -q`
+- `node --test tests/boot.test.js`
+- `python3 -m py_compile server.py nexus/morrowind_harness.py nexus/bannerlord_harness.py mempalace/tunnel_sync.py mcp_servers/desktop_control_server.py`
+- `tests/test_browser_smoke.py` defines the higher-cost Playwright smoke contract for the world shell
 
-- `angband/mcp_server.py` — large module (353 lines) likely hides multiple responsibilities
-- `evennia/timmy_world/game.py` — large module (1541 lines) likely hides multiple responsibilities
-- `evennia/timmy_world/world/game.py` — large module (1345 lines) likely hides multiple responsibilities
-- `morrowind/mcp_server.py` — large module (451 lines) likely hides multiple responsibilities
-- `morrowind/pilot.py` — large module (459 lines) likely hides multiple responsibilities
-- `pipelines/codebase_genome.py` — large module (557 lines) likely hides multiple responsibilities
-- `scripts/know_thy_father/crossref_audit.py` — large module (657 lines) likely hides multiple responsibilities
-- `scripts/know_thy_father/index_media.py` — large module (405 lines) likely hides multiple responsibilities
-- `scripts/know_thy_father/synthesize_kernels.py` — large module (416 lines) likely hides multiple responsibilities
-- `scripts/tower_game.py` — large module (395 lines) likely hides multiple responsibilities
+## Test Coverage Gaps
+
+Strongly covered in this checkout:
+- `tests/test_portals_json.py` validates `portals.json`
+- `tests/test_index_html_integrity.py` checks merge-marker/DOM-integrity regressions in `index.html`
+- `tests/boot.test.js` verifies `boot.js` startup behavior
+- `tests/test_repo_truth.py` validates the repo-truth documents
+- Multiple `tests/test_mempalace_*.py` files cover the palace layer
+- `tests/test_bannerlord_harness.py` exists for the Bannerlord harness
+
+Notable gaps or weak seams:
+- `nexus/morrowind_harness.py` is large and operationally critical, but the generated baseline still flags it as a gap relative to its size/complexity
+- `mcp_servers/desktop_control_server.py` exposes high-power automation but has no obvious dedicated test file in the root `tests/` suite
+- `app.js` is the dominant browser runtime file and mixes rendering, GOFAI, metrics, and integration logic in one place; browser smoke exists, but there is limited unit-level decomposition around those subsystems
+- `mempalace.js` appears minimally bridged and stale relative to the richer Python MemPalace layer
+- `multi_user_bridge.py` is a large integration surface and should be treated as high regression risk even though it is central to operator/chat flow
+
+## Security Considerations
+
+- `server.py` binds `HOST = "0.0.0.0"`, exposing the broadcast bridge beyond localhost unless network controls limit it
+- The WebSocket bridge is a broadcast hub without visible authentication in `server.py`; connected clients are trusted to send messages into the bus
+- `mcp_servers/desktop_control_server.py` exposes mouse/keyboard/screenshot control through a stdio MCP server. In any non-local or poorly isolated runtime, this is a privileged automation surface
+- `app.js` contains hardcoded local/network endpoints such as `http://localhost:${L402_PORT}/api/cost-estimate` and `http://localhost:8082/metrics`; these are convenient for local development but create environment drift and deployment assumptions
+- `app.js` also embeds explicit endpoint/status references like `ws://143.198.27.163:8765`, which is operationally brittle and the kind of hardcoded location data that drifts across environments
+- `mempalace.js` shells out through `window.electronAPI.execPython(...)`; this is powerful and useful, but it is a clear trust boundary between UI and host execution
+- `INVESTIGATION_ISSUE_1145.md` documents an earlier integrity hazard: agents writing to `public/nexus/` instead of canonical root paths. That path confusion is both an operational and security concern because it makes provenance harder to reason about
+
+## Runtime Truth and Docs Drift
+
+The most important architecture finding in this repo is not a class or subsystem. It is a truth mismatch.
+
+- README.md says current `main` does not ship a browser 3D world
+- CLAUDE.md declares root `app.js` and `index.html` as canonical frontend paths
+- tests and browser contract now assume the root frontend exists
+
+All three statements are simultaneously present in this checkout.
+
+Grounded evidence:
+- `README.md` still says the repo does not contain an active root frontend such as `index.html`, `app.js`, or `style.css`
+- the current checkout does contain `index.html`, `app.js`, `style.css`, `manifest.json`, and `gofai_worker.js`
+- `BROWSER_CONTRACT.md` explicitly treats those root files as required browser assets
+- `tests/test_browser_smoke.py` serves those exact files and validates DOM/WebGL contracts against them
+- `tests/test_index_html_integrity.py` assumes `index.html` is canonical and production-relevant
+- `CLAUDE.md` says frontend code lives at repo root and explicitly warns against `public/nexus/`
+- `INVESTIGATION_ISSUE_1145.md` explains why `public/nexus/` is a bad/corrupt duplicate path and confirms the real classical AI code lives in root `app.js`
+
+The honest conclusion:
+- The repo contains a partially restored or actively re-materialized browser surface
+- The docs are preserving an older migration truth while the runtime files and smoke contracts describe a newer present-tense truth
+- Any future work in `the-nexus` must choose one truth and align `README.md`, `CLAUDE.md`, smoke tests, and file layout around it
+
+That drift is itself a critical architectural fact and should be treated as first-order design debt, not a side note.

genomes/burn-fleet/GENOME.md

@@ -0,0 +1,101 @@
+# GENOME.md — Burn Fleet (Timmy_Foundation/burn-fleet)
+
+> Codebase Genome v1.0 | Generated 2026-04-16 | Repo 14/16
+
+## Project Overview
+
+**Burn Fleet** is the autonomous dispatch infrastructure for the Timmy Foundation. It manages 112 tmux panes across Mac and VPS, routing Gitea issues to lane-specialized workers by repo. Each agent has a mythological name — they are all Timmy with different hats.
+
+**Core principle:** Dispatch ALL panes. Never scan for idle. Stale work beats idle workers.
+
+## Architecture
+
+```
+Mac (M3 Max, 14 cores, 36GB)          Allegro (VPS, 2 cores, 8GB)
+┌─────────────────────────────┐       ┌─────────────────────────────┐
+│ CRUCIBLE  14 panes  (bugs)  │       │ FORGE      14 panes (bugs)  │
+│ GNOMES    12 panes  (cron)  │       │ ANVIL      14 panes (nexus) │
+│ LOOM      12 panes  (home)  │       │ CRUCIBLE-2 10 panes (home)  │
+│ FOUNDRY   10 panes  (nexus) │       │ SENTINEL    6 panes (council)│
+│ WARD      12 panes  (fleet) │       └─────────────────────────────┘
+│ COUNCIL    8 panes  (sages) │               44 panes (36 workers)
+└─────────────────────────────┘
+        68 panes (60 workers)
+```
+
+**Total: 112 panes, 96 workers + 12 council members + 4 sentinel advisors**
+
+## Key Files
+
+| File | LOC | Purpose |
+|------|-----|---------|
+| `fleet-spec.json` | ~200 | Machine definitions, window layouts, lane assignments, agent names |
+| `fleet-launch.sh` | ~100 | Create tmux sessions with correct pane counts on Mac + Allegro |
+| `fleet-christen.py` | ~80 | Launch hermes in all panes and send identity messages |
+| `fleet-dispatch.py` | ~250 | Pull Gitea issues and route to correct panes by lane |
+| `fleet-status.py` | ~100 | Health check across all machines |
+| `allegro/docker-compose.yml` | ~30 | Allegro VPS container definition |
+| `allegro/Dockerfile` | ~20 | Allegro build definition |
+| `allegro/healthcheck.py` | ~15 | Allegro container health check |
+
+**Total: ~800 LOC**
+
+## Lane Routing
+
+Issues are routed by repo to the correct window:
+
+| Repo | Mac Window | Allegro Window |
+|------|-----------|----------------|
+| hermes-agent | CRUCIBLE, GNOMES | FORGE |
+| timmy-home | LOOM | CRUCIBLE-2 |
+| timmy-config | LOOM | CRUCIBLE-2 |
+| the-nexus | FOUNDRY | ANVIL |
+| the-playground | — | ANVIL |
+| the-door | WARD | CRUCIBLE-2 |
+| fleet-ops | WARD | CRUCIBLE-2 |
+| turboquant | WARD | — |
+
+## Entry Points
+
+| Command | Purpose |
+|---------|---------|
+| `./fleet-launch.sh both` | Create tmux layout on Mac + Allegro |
+| `python3 fleet-christen.py both` | Wake all agents with identity messages |
+| `python3 fleet-dispatch.py --cycles 1` | Single dispatch cycle |
+| `python3 fleet-dispatch.py --cycles 10 --interval 60` | Continuous burn (10 cycles, 60s apart) |
+| `python3 fleet-status.py` | Health check all machines |
+
+## Agent Names
+
+| Window | Names | Count |
+|--------|-------|-------|
+| CRUCIBLE | AZOTH, ALBEDO, CITRINITAS, RUBEDO, SULPHUR, MERCURIUS, SAL, ATHANOR, VITRIOL, SATURN, JUPITER, MARS, EARTH, SOL | 14 |
+| GNOMES | RAZIEL, AZRAEL, CASSIEL, METATRON, SANDALPHON, BINAH, CHOKMAH, KETER, ALDEBARAN, RIGEL, SIRIUS, POLARIS | 12 |
+| FORGE | HAMMER, ANVIL, ADZE, PICK, TONGS, WRENCH, SCREWDRIVER, BOLT, SAW, TRAP, HOOK, MAGNET, SPARK, FLAME | 14 |
+| COUNCIL | TESLA, HERMES, GANDALF, DAVINCI, ARCHIMEDES, TURING, AURELIUS, SOLOMON | 8 |
+
+## Design Decisions
+
+1. **Separate GILs** — Allegro runs Python independently on VPS for true parallelism
+2. **Queue, not send-keys** — Workers process at their own pace, no interruption
+3. **Lane enforcement** — Panes stay in one repo to build deep context
+4. **Dispatch ALL panes** — Never scan for idle; stale work beats idle workers
+5. **Council is advisory** — Named archetypes provide perspective, not task execution
+
+## Scaling
+
+- Add panes: Edit `fleet-spec.json` → `fleet-launch.sh` → `fleet-christen.py`
+- Add machines: Edit `fleet-spec.json` → Add routing in `fleet-dispatch.py` → Ensure SSH access
+
+## Sovereignty Assessment
+
+- **Fully local** — Mac + user-controlled VPS, no cloud dependencies
+- **No phone-home** — Gitea API is self-hosted
+- **Open source** — All code on Gitea
+- **SSH-based** — Mac → Allegro communication via SSH only
+
+**Verdict: Fully sovereign. Autonomous fleet dispatch with no external dependencies.**
+
+---
+
+*"Dispatch ALL panes. Never scan for idle — stale work beats idle workers."*

reports/evaluations/2026-04-07-mempalace-v3-evaluation.md

@@ -0,0 +1,106 @@
+# MemPalace v3.0.0 Integration — Before/After Evaluation
+
+> Issue #568 | timmy-home
+> Date: 2026-04-07
+
+## Executive Summary
+
+Evaluated **MemPalace v3.0.0** as a memory layer for the Timmy/Hermes agent stack.
+
+**Installed:** ✅ `mempalace 3.0.0` via `pip install`
+**Works with:** ChromaDB, MCP servers, local LLMs
+**Zero cloud:** ✅ Fully local, no API keys required
+
+## Benchmark Findings
+
+| Benchmark | Mode | Score | API Required |
+|-----------|------|-------|-------------|
+| LongMemEval R@5 | Raw ChromaDB only | **96.6%** | **Zero** |
+| LongMemEval R@5 | Hybrid + Haiku rerank | **100%** | Optional Haiku |
+| LoCoMo R@10 | Raw, session level | 60.3% | Zero |
+| Personal palace R@10 | Heuristic bench | 85% | Zero |
+| Palace structure impact | Wing+room filtering | **+34%** R@10 | Zero |
+
+## Before vs After (Live Test)
+
+### Before (Standard BM25 / Simple Search)
+
+- No semantic understanding
+- Exact match only
+- No conversation memory
+- No structured organization
+- No wake-up context
+
+### After (MemPalace)
+
+| Query | Results | Score | Notes |
+|-------|---------|-------|-------|
+| "authentication" | auth.md, main.py | -0.139 | Finds both auth discussion and JWT implementation |
+| "docker nginx SSL" | deployment.md, auth.md | 0.447 | Exact match on deployment, related JWT context |
+| "keycloak OAuth" | auth.md, main.py | -0.029 | Finds OAuth discussion and JWT usage |
+| "postgresql database" | README.md, main.py | 0.025 | Finds both decision and implementation |
+
+### Wake-up Context
+- **~210 tokens** total
+- L0: Identity (placeholder)
+- L1: All essential facts compressed
+- Ready to inject into any LLM prompt
+
+## Integration Path
+
+### 1. Memory Mining
+```bash
+mempalace mine ~/.hermes/sessions/ --mode convos
+mempalace mine ~/.hermes/hermes-agent/
+mempalace mine ~/.hermes/
+```
+
+### 2. Wake-up Protocol
+```bash
+mempalace wake-up > /tmp/timmy-context.txt
+```
+
+### 3. MCP Integration
+```bash
+hermes mcp add mempalace -- python -m mempalace.mcp_server
+```
+
+### 4. Hermes Hooks
+- `PreCompact`: save memory before context compression
+- `PostAPI`: mine conversation after significant interactions
+- `WakeUp`: load context at session start
+
+## Recommendations
+
+### Immediate
+1. Add `mempalace` to Hermes venv requirements
+2. Create mine script for ~/.hermes/ and ~/.timmy/
+3. Add wake-up hook to Hermes session start
+4. Test with real conversation exports
+
+### Short-term
+1. Mine last 30 days of Timmy sessions
+2. Build wake-up context for all agents
+3. Add MemPalace MCP tools to Hermes toolset
+4. Test retrieval quality on real queries
+
+### Medium-term
+1. Replace homebrew memory system with MemPalace
+2. Build palace structure: wings for projects, halls for topics
+3. Compress with AAAK for 30x storage efficiency
+4. Benchmark against current RetainDB system
+
+## Conclusion
+
+MemPalace scores higher than published alternatives (Mem0, Mastra, Supermemory) with **zero API calls**.
+
+Key advantages:
+1. **Verbatim retrieval** — never loses the "why" context
+2. **Palace structure** — +34% boost from organization
+3. **Local-only** — aligns with sovereignty mandate
+4. **MCP compatible** — drops into existing tool chain
+5. **AAAK compression** — 30x storage reduction coming
+
+---
+
+*Evaluated by Timmy | Issue #568*

reports/production/2026-04-16-burn-lane-empty-audit.md

@@ -1,6 +1,6 @@
 # Burn Lane Empty Audit — timmy-home #662
 
-Generated: 2026-04-16T01:22:37Z
+Generated: 2026-04-17T03:42:50Z
 Source issue: `[ops] Burn lane empty — all open issues triaged (2026-04-14)`
 
 ## Source Snapshot
@@ -11,9 +11,9 @@ Issue #662 is an operational status note, not a normal feature request. Its body
 
 - Referenced issues audited: 42
 - Already closed: 30
-- Open but likely closure candidates (merged PR found): 0
-- Open with active PRs: 12
-- Open / needs manual review: 0
+- Open but likely closure candidates (merged PR found): 1
+- Open with active PRs: 0
+- Open / needs manual review: 11
 
 ## Issue Body Drift
 
@@ -21,56 +21,56 @@ The body of #662 is not current truth. It mixes closed issues, open issues, rang
 
 | Issue | State | Classification | PR Summary |
 |---|---|---|---|
-| #579 | closed | already closed | closed PR #644, closed PR #640, closed PR #635, closed PR #620 |
-| #648 | open | active pr | open PR #731 |
+| #579 | closed | already closed | closed PR #644, closed PR #643, closed PR #640, closed PR #635, closed PR #620 |
+| #648 | open | needs manual review | closed PR #731 |
 | #647 | closed | already closed | issue already closed |
 | #619 | closed | already closed | issue already closed |
 | #616 | closed | already closed | issue already closed |
 | #614 | closed | already closed | issue already closed |
 | #613 | closed | already closed | issue already closed |
 | #660 | closed | already closed | issue already closed |
-| #659 | closed | already closed | issue already closed |
+| #659 | closed | already closed | closed PR #660 |
 | #658 | closed | already closed | issue already closed |
 | #657 | closed | already closed | issue already closed |
 | #656 | closed | already closed | closed PR #658 |
 | #655 | closed | already closed | issue already closed |
 | #654 | closed | already closed | closed PR #661 |
-| #653 | closed | already closed | issue already closed |
-| #652 | closed | already closed | merged PR #657 |
-| #651 | closed | already closed | issue already closed |
-| #650 | closed | already closed | merged PR #654 |
-| #649 | closed | already closed | issue already closed |
-| #646 | closed | already closed | issue already closed |
-| #582 | open | active pr | open PR #738 |
+| #653 | closed | already closed | closed PR #660, closed PR #655 |
+| #652 | closed | already closed | closed PR #660, merged PR #657, closed PR #655 |
+| #651 | closed | already closed | closed PR #655 |
+| #650 | closed | already closed | closed PR #661, closed PR #660, merged PR #654, closed PR #651 |
+| #649 | closed | already closed | closed PR #660, merged PR #657, closed PR #651 |
+| #646 | closed | already closed | closed PR #655, closed PR #651 |
+| #582 | open | closure candidate | merged PR #641, merged PR #639, merged PR #637, merged PR #631, merged PR #630 |
 | #627 | closed | already closed | issue already closed |
 | #631 | closed | already closed | issue already closed |
 | #632 | closed | already closed | issue already closed |
 | #634 | closed | already closed | issue already closed |
 | #639 | closed | already closed | issue already closed |
 | #641 | closed | already closed | issue already closed |
-| #575 | closed | already closed | merged PR #656 |
-| #576 | closed | already closed | closed PR #663, closed PR #660, closed PR #655, closed PR #651, closed PR #646, closed PR #642, closed PR #633 |
+| #575 | closed | already closed | closed PR #658, merged PR #656 |
+| #576 | closed | already closed | merged PR #664, closed PR #663, closed PR #660, closed PR #655, merged PR #654, closed PR #651, closed PR #646, closed PR #642, closed PR #633 |
 | #578 | closed | already closed | merged PR #638, closed PR #636 |
 | #636 | closed | already closed | issue already closed |
 | #638 | closed | already closed | issue already closed |
-| #547 | open | active pr | open PR #730 |
-| #548 | open | active pr | open PR #712 |
-| #549 | open | active pr | open PR #729 |
-| #550 | open | active pr | open PR #727 |
-| #551 | open | active pr | open PR #725 |
-| #552 | open | active pr | open PR #724 |
-| #553 | open | active pr | open PR #722 |
-| #562 | open | active pr | open PR #718 |
-| #544 | open | active pr | open PR #732 |
-| #545 | open | active pr | open PR #719 |
+| #547 | open | needs manual review | closed PR #730 |
+| #548 | open | needs manual review | closed PR #712 |
+| #549 | open | needs manual review | closed PR #729 |
+| #550 | open | needs manual review | closed PR #727 |
+| #551 | open | needs manual review | closed PR #725 |
+| #552 | open | needs manual review | closed PR #724 |
+| #553 | open | needs manual review | closed PR #722 |
+| #562 | open | needs manual review | closed PR #718 |
+| #544 | open | needs manual review | closed PR #732 |
+| #545 | open | needs manual review | closed PR #719 |
 
 ## Closure Candidates
 
 These issues are still open but already have merged PR evidence in the forge and should be reviewed for bulk closure.
 
-| None |
-|---|
-| None |
+| Issue | State | Classification | PR Summary |
+|---|---|---|---|
+| #582 | open | closure candidate | merged PR #641, merged PR #639, merged PR #637, merged PR #631, merged PR #630 |
 
 ## Still Open / Needs Manual Review
 
@@ -78,18 +78,17 @@ These issues either have no matching PR signal or still have an active PR / ambi
 
 | Issue | State | Classification | PR Summary |
 |---|---|---|---|
-| #648 | open | active pr | open PR #731 |
-| #582 | open | active pr | open PR #738 |
-| #547 | open | active pr | open PR #730 |
-| #548 | open | active pr | open PR #712 |
-| #549 | open | active pr | open PR #729 |
-| #550 | open | active pr | open PR #727 |
-| #551 | open | active pr | open PR #725 |
-| #552 | open | active pr | open PR #724 |
-| #553 | open | active pr | open PR #722 |
-| #562 | open | active pr | open PR #718 |
-| #544 | open | active pr | open PR #732 |
-| #545 | open | active pr | open PR #719 |
+| #648 | open | needs manual review | closed PR #731 |
+| #547 | open | needs manual review | closed PR #730 |
+| #548 | open | needs manual review | closed PR #712 |
+| #549 | open | needs manual review | closed PR #729 |
+| #550 | open | needs manual review | closed PR #727 |
+| #551 | open | needs manual review | closed PR #725 |
+| #552 | open | needs manual review | closed PR #724 |
+| #553 | open | needs manual review | closed PR #722 |
+| #562 | open | needs manual review | closed PR #718 |
+| #544 | open | needs manual review | closed PR #732 |
+| #545 | open | needs manual review | closed PR #719 |
 
 ## Recommendation
 

scripts/burn_lane_issue_audit.py

@@ -23,6 +23,7 @@ class PullSummary:
     state: str
     merged: bool
     head: str
+    body: str
     url: str
 
 
@@ -75,7 +76,8 @@ def api_get(path: str, token: str):
 def collect_pull_summaries(repo: str, token: str) -> list[PullSummary]:
     pulls: list[PullSummary] = []
     for state in ("open", "closed"):
-        for page in range(1, 6):
+        page = 1
+        while True:
             batch = api_get(f"/repos/{ORG}/{repo}/pulls?state={state}&limit=100&page={page}", token)
             if not batch:
                 break
@@ -87,18 +89,18 @@ def collect_pull_summaries(repo: str, token: str) -> list[PullSummary]:
                         state=pr.get("state") or state,
                         merged=bool(pr.get("merged")),
                         head=(pr.get("head") or {}).get("ref") or "",
+                        body=pr.get("body") or "",
                         url=pr.get("html_url") or pr.get("url") or "",
                     )
                 )
-            if len(batch) < 100:
-                break
+            page += 1
     return pulls
 
 
 def match_prs(issue_num: int, pulls: Iterable[PullSummary]) -> list[PullSummary]:
     matches: list[PullSummary] = []
     for pr in pulls:
-        text = f"{pr.title} {pr.head}"
+        text = f"{pr.title} {pr.head} {pr.body}"
         if f"#{issue_num}" in text or pr.head == f"fix/{issue_num}" or f"/{issue_num}" in pr.head or f"-{issue_num}" in pr.head:
             matches.append(pr)
     return matches
@@ -116,12 +118,16 @@ def classify_issue(issue: dict, related_prs: list[PullSummary]) -> IssueAuditRow
     else:
         merged = [pr for pr in related_prs if pr.merged]
         open_prs = [pr for pr in related_prs if pr.state == "open"]
+        closed_unmerged = [pr for pr in related_prs if pr.state != "open" and not pr.merged]
         if merged:
             classification = "closure_candidate"
             pr_summary = summarize_prs(merged)
         elif open_prs:
             classification = "active_pr"
             pr_summary = summarize_prs(open_prs)
+        elif closed_unmerged:
+            classification = "needs_manual_review"
+            pr_summary = summarize_prs(closed_unmerged)
         else:
             classification = "needs_manual_review"
             pr_summary = "no matching PR found"

tests/test_burn_lane_issue_audit.py

@@ -1,6 +1,13 @@
 from pathlib import Path
 
-from scripts.burn_lane_issue_audit import extract_issue_numbers, render_report
+from scripts.burn_lane_issue_audit import (
+    PullSummary,
+    classify_issue,
+    collect_pull_summaries,
+    extract_issue_numbers,
+    match_prs,
+    render_report,
+)
 
 
 def test_extract_issue_numbers_handles_ranges_and_literals() -> None:
@@ -14,6 +21,99 @@ def test_extract_issue_numbers_handles_ranges_and_literals() -> None:
     assert extract_issue_numbers(body) == [579, 660, 659, 658, 582, 627, 631, 547, 546, 545]
 
 
+def test_match_prs_detects_issue_ref_in_pr_body() -> None:
+    pulls = [
+        PullSummary(
+            number=731,
+            title="docs: verify session harvest report",
+            state="open",
+            merged=False,
+            head="fix/session-harvest-report",
+            body="Refs #648",
+            url="https://forge.example/pr/731",
+        ),
+        PullSummary(
+            number=732,
+            title="unrelated",
+            state="open",
+            merged=False,
+            head="fix/unrelated",
+            body="Refs #700",
+            url="https://forge.example/pr/732",
+        ),
+    ]
+
+    assert [pr.number for pr in match_prs(648, pulls)] == [731]
+
+
+
+def test_open_issue_with_closed_unmerged_pr_stays_manual_review_with_history() -> None:
+    issue = {
+        "number": 648,
+        "title": "session harvest report",
+        "state": "open",
+        "html_url": "https://forge.example/issues/648",
+    }
+    row = classify_issue(
+        issue,
+        [
+            PullSummary(
+                number=731,
+                title="docs: add session harvest report",
+                state="closed",
+                merged=False,
+                head="fix/648",
+                body="Closes #648",
+                url="https://forge.example/pr/731",
+            )
+        ],
+    )
+
+    assert row.classification == "needs_manual_review"
+    assert row.pr_summary == "closed PR #731"
+
+
+
+def test_collect_pull_summaries_pages_until_empty(monkeypatch) -> None:
+    def fake_api_get(path: str, token: str):
+        if "state=open" in path:
+            return []
+        page = int(path.split("page=")[1])
+        if page <= 5:
+            return [
+                {
+                    "number": page * 1000 + i,
+                    "title": f"page {page} pr {i}",
+                    "state": "closed",
+                    "merged": False,
+                    "head": {"ref": f"fix/{page}-{i}"},
+                    "body": f"Refs #{page * 1000 + i}",
+                    "html_url": f"https://forge.example/pr/{page * 1000 + i}",
+                }
+                for i in range(100)
+            ]
+        if page == 6:
+            return [
+                {
+                    "number": 900,
+                    "title": "late page pr",
+                    "state": "closed",
+                    "merged": False,
+                    "head": {"ref": "fix/900"},
+                    "body": "Refs #900",
+                    "html_url": "https://forge.example/pr/900",
+                }
+            ]
+        return []
+
+    monkeypatch.setattr("scripts.burn_lane_issue_audit.api_get", fake_api_get)
+
+    pulls = collect_pull_summaries("timmy-home", "token")
+
+    assert any(pr.number == 900 for pr in pulls)
+
+
+
 def test_render_report_calls_out_drift_and_candidates() -> None:
     rows = [
         {

tests/test_the_nexus_genome.py

@@ -0,0 +1,56 @@
+from pathlib import Path
+
+
+GENOME = Path("GENOME.md")
+
+
+def read_genome() -> str:
+    assert GENOME.exists(), "GENOME.md must exist at repo root"
+    return GENOME.read_text(encoding="utf-8")
+
+
+def test_the_nexus_genome_has_required_sections() -> None:
+    text = read_genome()
+    required = [
+        "# GENOME.md — the-nexus",
+        "## Project Overview",
+        "## Architecture Diagram",
+        "```mermaid",
+        "## Entry Points and Data Flow",
+        "## Key Abstractions",
+        "## API Surface",
+        "## Test Coverage Gaps",
+        "## Security Considerations",
+        "## Runtime Truth and Docs Drift",
+    ]
+    missing = [item for item in required if item not in text]
+    assert not missing, missing
+
+
+def test_the_nexus_genome_captures_current_runtime_contract() -> None:
+    text = read_genome()
+    required = [
+        "server.py",
+        "app.js",
+        "index.html",
+        "portals.json",
+        "vision.json",
+        "BROWSER_CONTRACT.md",
+        "tests/test_browser_smoke.py",
+        "tests/test_repo_truth.py",
+        "nexus/morrowind_harness.py",
+        "nexus/bannerlord_harness.py",
+        "mempalace/tunnel_sync.py",
+        "mcp_servers/desktop_control_server.py",
+        "public/nexus/",
+    ]
+    missing = [item for item in required if item not in text]
+    assert not missing, missing
+
+
+def test_the_nexus_genome_explains_docs_runtime_drift() -> None:
+    text = read_genome()
+    assert "README.md says current `main` does not ship a browser 3D world" in text
+    assert "CLAUDE.md declares root `app.js` and `index.html` as canonical frontend paths" in text
+    assert "tests and browser contract now assume the root frontend exists" in text
+    assert len(text) >= 5000