feat: add codebase genome nightly cron spec (#665)

GENOME.md

@@ -1,209 +1,144 @@
-# GENOME.md — the-nexus
+# GENOME.md — Timmy_Foundation/timmy-home
+
+Generated by `pipelines/codebase_genome.py`.
 
 ## Project Overview
 
-`the-nexus` is a hybrid repo that combines three layers in one codebase:
+Timmy Foundation's home repository for development operations and configurations.
 
-1. A browser-facing world shell rooted in `index.html`, `boot.js`, `bootstrap.mjs`, `app.js`, `style.css`, `portals.json`, `vision.json`, `manifest.json`, and `gofai_worker.js`
-2. A Python realtime bridge centered on `server.py` plus harness code under `nexus/`
-3. A memory / fleet / operator layer spanning `mempalace/`, `mcp_servers/`, `multi_user_bridge.py`, and supporting scripts
+- Text files indexed: 3181
+- Source and script files: 231
+- Test files: 95
+- Documentation files: 755
 
-The repo is not a clean single-purpose frontend and not just a backend harness. It is a mixed world/runtime/ops repository where browser rendering, WebSocket telemetry, MCP-driven game harnesses, and fleet memory tooling coexist.
-
-Grounded repo facts from this checkout:
-- Browser shell files exist at repo root: `index.html`, `app.js`, `style.css`, `manifest.json`, `gofai_worker.js`
-- Data/config files also live at repo root: `portals.json`, `vision.json`
-- Realtime bridge exists in `server.py`
-- Game harnesses exist in `nexus/morrowind_harness.py` and `nexus/bannerlord_harness.py`
-- Memory/fleet sync exists in `mempalace/tunnel_sync.py`
-- Desktop/game automation MCP servers exist in `mcp_servers/desktop_control_server.py` and `mcp_servers/steam_info_server.py`
-- Validation exists in `tests/test_browser_smoke.py`, `tests/test_portals_json.py`, `tests/test_index_html_integrity.py`, and `tests/test_repo_truth.py`
-
-The current architecture is best understood as a sovereign world shell plus operator/game harness backend, with accumulated documentation drift from multiple restoration and migration efforts.
-
-## Architecture Diagram
+## Architecture
 
 ```mermaid
 graph TD
-    browser[Index HTML Shell\nindex.html -> boot.js -> bootstrap.mjs -> app.js]
-    assets[Root Assets\nstyle.css\nmanifest.json\ngofai_worker.js]
-    data[World Data\nportals.json\nvision.json]
-    ws[Realtime Bridge\nserver.py\nWebSocket broadcast hub]
-    gofai[In-browser GOFAI\nSymbolicEngine\nNeuroSymbolicBridge\nsetupGOFAI/updateGOFAI]
-    harnesses[Python Harnesses\nnexus/morrowind_harness.py\nnexus/bannerlord_harness.py]
-    mcp[MCP Adapters\nmcp_servers/desktop_control_server.py\nmcp_servers/steam_info_server.py]
-    memory[Memory + Fleet\nmempalace/tunnel_sync.py\nmempalace.js]
-    bridge[Operator / MUD Bridge\nmulti_user_bridge.py\ncommands/timmy_commands.py]
-    tests[Verification\ntests/test_browser_smoke.py\ntests/test_portals_json.py\ntests/test_repo_truth.py]
-    docs[Contracts + Drift Docs\nBROWSER_CONTRACT.md\nREADME.md\nCLAUDE.md\nINVESTIGATION_ISSUE_1145.md]
-
-    browser --> assets
-    browser --> data
-    browser --> gofai
-    browser --> ws
-    harnesses --> mcp
-    harnesses --> ws
-    bridge --> ws
-    memory --> ws
-    tests --> browser
-    tests --> data
-    tests --> docs
-    docs --> browser
+  repo_root["repo"]
+  angband["angband"]
+  ansible["ansible"]
+  briefings["briefings"]
+  codebase_genome["codebase_genome"]
+  config["config"]
+  configs["configs"]
+  conftest["conftest"]
+  dns_records["dns-records"]
+  evennia["evennia"]
+  evennia_tools["evennia_tools"]
+  repo_root --> angband
+  repo_root --> ansible
+  repo_root --> briefings
+  repo_root --> codebase_genome
+  repo_root --> config
+  repo_root --> configs
 ```
 
-## Entry Points and Data Flow
+## Entry Points
 
-### Primary entry points
+- `codebase_genome.py` — python main guard (`python3 codebase_genome.py`)
+- `gemini-fallback-setup.sh` — operational script (`bash gemini-fallback-setup.sh`)
+- `morrowind/hud.sh` — operational script (`bash morrowind/hud.sh`)
+- `pipelines/codebase_genome.py` — python main guard (`python3 pipelines/codebase_genome.py`)
+- `scripts/agent_pr_gate.py` — operational script (`python3 scripts/agent_pr_gate.py`)
+- `scripts/audit_trail.py` — operational script (`python3 scripts/audit_trail.py`)
+- `scripts/auto_restart_agent.sh` — operational script (`bash scripts/auto_restart_agent.sh`)
+- `scripts/autonomous_issue_creator.py` — operational script (`python3 scripts/autonomous_issue_creator.py`)
+- `scripts/backlog_cleanup.py` — operational script (`python3 scripts/backlog_cleanup.py`)
+- `scripts/backlog_triage.py` — operational script (`python3 scripts/backlog_triage.py`)
+- `scripts/backlog_triage_cron.sh` — operational script (`bash scripts/backlog_triage_cron.sh`)
+- `scripts/backup_pipeline.sh` — operational script (`bash scripts/backup_pipeline.sh`)
 
-- `index.html` — root browser entry point
-- `boot.js` — startup selector; `tests/boot.test.js` shows it chooses file-mode vs HTTP/module-mode and injects `bootstrap.mjs` when served over HTTP
-- `bootstrap.mjs` — module bootstrap for the browser shell
-- `app.js` — main browser runtime; owns world state, GOFAI wiring, metrics polling, and portal/UI logic
-- `server.py` — WebSocket broadcast bridge on `ws://0.0.0.0:8765`
-- `nexus/morrowind_harness.py` — GamePortal/MCP harness for OpenMW Morrowind
-- `nexus/bannerlord_harness.py` — GamePortal/MCP harness for Bannerlord
-- `mempalace/tunnel_sync.py` — pulls remote fleet closets into the local palace over HTTP
-- `multi_user_bridge.py` — HTTP bridge for multi-user chat/session integration
-- `mcp_servers/desktop_control_server.py` — stdio MCP server exposing screenshots/mouse/keyboard control
+## Data Flow
 
-### Data flow
-
-1. Browser startup begins at `index.html`
-2. `boot.js` decides whether the page is being served correctly; in HTTP mode it injects `bootstrap.mjs`
-3. `bootstrap.mjs` hands off to `app.js`
-4. `app.js` loads world configuration from `portals.json` and `vision.json`
-5. `app.js` constructs the Three.js scene and in-browser reasoning components, including `SymbolicEngine`, `NeuroSymbolicBridge`, `setupGOFAI()`, and `updateGOFAI()`
-6. Browser state and external runtimes connect through `server.py`, which broadcasts messages between connected clients
-7. Python harnesses (`nexus/morrowind_harness.py`, `nexus/bannerlord_harness.py`) spawn MCP subprocesses for desktop control / Steam metadata, capture state, execute actions, and feed telemetry into the Nexus bridge
-8. Memory/fleet tools like `mempalace/tunnel_sync.py` import remote palace data into local closets, extending what the operator/runtime layers can inspect
-9. Tests validate both the static browser contract and the higher-level repo-truth/memory contracts
-
-### Important repo-specific runtime facts
-
-- `portals.json` is a JSON array of portal/world/operator entries; examples in this checkout include `morrowind`, `bannerlord`, `workshop`, `archive`, `chapel`, and `courtyard`
-- `server.py` is a plain broadcast hub: clients send messages, the server forwards them to other connected clients
-- `nexus/morrowind_harness.py` and `nexus/bannerlord_harness.py` both implement a GamePortal pattern with MCP subprocess clients over stdio and WebSocket telemetry uplink
-- `mempalace/tunnel_sync.py` is not speculative; it is a real client that discovers remote wings, searches remote rooms, and writes `.closet.json` payloads locally
+1. Operators enter through `codebase_genome.py`, `gemini-fallback-setup.sh`, `morrowind/hud.sh`.
+2. Core logic fans into top-level components: `angband`, `ansible`, `briefings`, `codebase_genome`, `config`, `configs`.
+3. Validation is incomplete around `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py`, `timmy-local/cache/agent_cache.py`, `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py`, so changes there carry regression risk.
+4. Final artifacts land as repository files, docs, or runtime side effects depending on the selected entry point.
 
 ## Key Abstractions
 
-### Browser runtime
-
-- `app.js`
-  - Defines in-browser reasoning/state machinery, including `class SymbolicEngine`, `class NeuroSymbolicBridge`, `setupGOFAI()`, and `updateGOFAI()`
-  - Couples rendering, local symbolic reasoning, metrics polling, and portal/UI logic in one very large root module
-- `BROWSER_CONTRACT.md`
-  - Acts like an executable architecture contract for the browser surface
-  - Declares required files, DOM IDs, Three.js expectations, provenance rules, and WebSocket expectations
-
-### Realtime bridge
-
-- `server.py`
-  - Single hub abstraction: a WebSocket broadcast server maintaining a `clients` set and forwarding messages from one client to the others
-  - This is the seam between browser shell, harnesses, and external telemetry producers
-
-### GamePortal harness layer
-
-- `nexus/morrowind_harness.py`
-- `nexus/bannerlord_harness.py`
-  - Both define MCP client wrappers, `GameState` / `ActionResult`-style data classes, and an Observe-Decide-Act telemetry loop
-  - The harnesses are symmetric enough to be understood as reusable portal adapters with game-specific context injected on top
-
-### Memory / fleet layer
-
-- `mempalace/tunnel_sync.py`
-  - Encodes the fleet-memory sync client contract: discover wings, pull broad room queries, write closet files, support dry-run
-- `mempalace.js`
-  - Minimal browser/Electron bridge to MemPalace commands via `window.electronAPI.execPython(...)`
-  - Important because it shows a second memory integration surface distinct from the Python fleet sync path
-
-### Operator / interaction bridge
-
-- `multi_user_bridge.py`
-- `commands/timmy_commands.py`
-  - These bridge user-facing conversations or MUD/Evennia interactions back into Timmy/Nexus services
+- `codebase_genome.py` — classes `FunctionInfo`:19; functions `extract_functions()`:58, `generate_test()`:116, `scan_repo()`:191, `find_existing_tests()`:209, `main()`:231
+- `evennia/timmy_world/game.py` — classes `World`:91, `ActionSystem`:421, `TimmyAI`:539, `NPCAI`:550; functions `get_narrative_phase()`:55, `get_phase_transition_event()`:65
+- `evennia/timmy_world/world/game.py` — classes `World`:19, `ActionSystem`:326, `TimmyAI`:444, `NPCAI`:455; functions none detected
+- `timmy-world/game.py` — classes `World`:19, `ActionSystem`:349, `TimmyAI`:467, `NPCAI`:478; functions none detected
+- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — classes none detected; functions none detected
+- `uniwizard/self_grader.py` — classes `SessionGrade`:23, `WeeklyReport`:55, `SelfGrader`:74; functions `main()`:713
+- `uni-wizard/v3/intelligence_engine.py` — classes `ExecutionPattern`:27, `ModelPerformance`:44, `AdaptationEvent`:58, `PatternDatabase`:69; functions none detected
+- `scripts/know_thy_father/crossref_audit.py` — classes `ThemeCategory`:30, `Principle`:160, `MeaningKernel`:169, `CrossRefFinding`:178; functions `extract_themes_from_text()`:192, `parse_soul_md()`:206, `parse_kernels()`:264, `cross_reference()`:296, `generate_report()`:440, `main()`:561
 
 ## API Surface
 
-### Browser / static surface
+- CLI: `python3 codebase_genome.py` — python main guard (`codebase_genome.py`)
+- CLI: `bash gemini-fallback-setup.sh` — operational script (`gemini-fallback-setup.sh`)
+- CLI: `bash morrowind/hud.sh` — operational script (`morrowind/hud.sh`)
+- CLI: `python3 pipelines/codebase_genome.py` — python main guard (`pipelines/codebase_genome.py`)
+- CLI: `python3 scripts/agent_pr_gate.py` — operational script (`scripts/agent_pr_gate.py`)
+- CLI: `python3 scripts/audit_trail.py` — operational script (`scripts/audit_trail.py`)
+- CLI: `bash scripts/auto_restart_agent.sh` — operational script (`scripts/auto_restart_agent.sh`)
+- CLI: `python3 scripts/autonomous_issue_creator.py` — operational script (`scripts/autonomous_issue_creator.py`)
+- Python: `extract_functions()` from `codebase_genome.py:58`
+- Python: `generate_test()` from `codebase_genome.py:116`
+- Python: `scan_repo()` from `codebase_genome.py:191`
+- Python: `find_existing_tests()` from `codebase_genome.py:209`
+- Python: `main()` from `codebase_genome.py:231`
+- Python: `get_narrative_phase()` from `evennia/timmy_world/game.py:55`
 
-- `index.html` served over HTTP
-- `boot.js` exports `bootPage()`; verified by `node --test tests/boot.test.js`
-- Data APIs are file-based inside the repo: `portals.json`, `vision.json`, `manifest.json`
+## Test Coverage Report
 
-### Network/runtime surface
+- Source and script files inspected: 231
+- Test files inspected: 95
+- Coverage gaps:
+  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — no matching test reference detected
+  - `timmy-local/cache/agent_cache.py` — no matching test reference detected
+  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py` — no matching test reference detected
+  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/godmode_race.py` — no matching test reference detected
+  - `skills/productivity/google-workspace/scripts/google_api.py` — no matching test reference detected
+  - `wizards/allegro/home/skills/productivity/google-workspace/scripts/google_api.py` — no matching test reference detected
+  - `morrowind/pilot.py` — no matching test reference detected
+  - `scripts/sovereignty_audit.py` — no matching test reference detected
+  - `skills/research/domain-intel/scripts/domain_intel.py` — no matching test reference detected
+  - `wizards/allegro/home/skills/research/domain-intel/scripts/domain_intel.py` — no matching test reference detected
+  - `timmy-local/scripts/ingest.py` — no matching test reference detected
+  - `uni-wizard/scripts/generate_scorecard.py` — no matching test reference detected
 
-- `python3 server.py`
-  - Starts the WebSocket bridge on port `8765`
-- `python3 l402_server.py`
-  - Local HTTP microservice for cost-estimate style responses
-- `python3 multi_user_bridge.py`
-  - Multi-user HTTP/chat bridge
+## Security Audit Findings
 
-### Harness / operator CLI surfaces
+- [medium] `briefings/briefing_20260325.json:37` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"gitea_error": "Gitea 404: {\"errors\":null,\"message\":\"not found\",\"url\":\"http://143.198.27.163:3000/api/swagger\"}\n [http://143.198.27.163:3000/api/v1/repos/Timmy_Foundation/sovereign-orchestration/issues?state=open&type=issues&sort=created&direction=desc&limit=1&page=1]",`
+- [medium] `briefings/briefing_20260328.json:11` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"provider_base_url": "http://localhost:8081/v1",`
+- [medium] `briefings/briefing_20260329.json:11` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"provider_base_url": "http://localhost:8081/v1",`
+- [medium] `config.yaml:37` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `summary_base_url: http://localhost:11434/v1`
+- [medium] `config.yaml:47` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:52` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:57` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:62` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:67` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:77` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:82` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:174` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: http://localhost:11434/v1`
 
-- `python3 nexus/morrowind_harness.py`
-- `python3 nexus/bannerlord_harness.py`
-- `python3 mempalace/tunnel_sync.py --peer <url> [--dry-run] [--n N]`
-- `python3 mcp_servers/desktop_control_server.py`
-- `python3 mcp_servers/steam_info_server.py`
+## Dead Code Candidates
 
-### Validation surface
+- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — not imported by indexed Python modules and not referenced by tests
+- `timmy-local/cache/agent_cache.py` — not imported by indexed Python modules and not referenced by tests
+- `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py` — not imported by indexed Python modules and not referenced by tests
+- `wizards/allegro/home/skills/red-teaming/godmode/scripts/godmode_race.py` — not imported by indexed Python modules and not referenced by tests
+- `skills/productivity/google-workspace/scripts/google_api.py` — not imported by indexed Python modules and not referenced by tests
+- `wizards/allegro/home/skills/productivity/google-workspace/scripts/google_api.py` — not imported by indexed Python modules and not referenced by tests
+- `morrowind/pilot.py` — not imported by indexed Python modules and not referenced by tests
+- `scripts/sovereignty_audit.py` — not imported by indexed Python modules and not referenced by tests
+- `skills/research/domain-intel/scripts/domain_intel.py` — not imported by indexed Python modules and not referenced by tests
+- `wizards/allegro/home/skills/research/domain-intel/scripts/domain_intel.py` — not imported by indexed Python modules and not referenced by tests
 
-- `python3 -m pytest tests/test_portals_json.py tests/test_index_html_integrity.py tests/test_repo_truth.py -q`
-- `node --test tests/boot.test.js`
-- `python3 -m py_compile server.py nexus/morrowind_harness.py nexus/bannerlord_harness.py mempalace/tunnel_sync.py mcp_servers/desktop_control_server.py`
-- `tests/test_browser_smoke.py` defines the higher-cost Playwright smoke contract for the world shell
+## Performance Bottleneck Analysis
 
-## Test Coverage Gaps
-
-Strongly covered in this checkout:
-- `tests/test_portals_json.py` validates `portals.json`
-- `tests/test_index_html_integrity.py` checks merge-marker/DOM-integrity regressions in `index.html`
-- `tests/boot.test.js` verifies `boot.js` startup behavior
-- `tests/test_repo_truth.py` validates the repo-truth documents
-- Multiple `tests/test_mempalace_*.py` files cover the palace layer
-- `tests/test_bannerlord_harness.py` exists for the Bannerlord harness
-
-Notable gaps or weak seams:
-- `nexus/morrowind_harness.py` is large and operationally critical, but the generated baseline still flags it as a gap relative to its size/complexity
-- `mcp_servers/desktop_control_server.py` exposes high-power automation but has no obvious dedicated test file in the root `tests/` suite
-- `app.js` is the dominant browser runtime file and mixes rendering, GOFAI, metrics, and integration logic in one place; browser smoke exists, but there is limited unit-level decomposition around those subsystems
-- `mempalace.js` appears minimally bridged and stale relative to the richer Python MemPalace layer
-- `multi_user_bridge.py` is a large integration surface and should be treated as high regression risk even though it is central to operator/chat flow
-
-## Security Considerations
-
-- `server.py` binds `HOST = "0.0.0.0"`, exposing the broadcast bridge beyond localhost unless network controls limit it
-- The WebSocket bridge is a broadcast hub without visible authentication in `server.py`; connected clients are trusted to send messages into the bus
-- `mcp_servers/desktop_control_server.py` exposes mouse/keyboard/screenshot control through a stdio MCP server. In any non-local or poorly isolated runtime, this is a privileged automation surface
-- `app.js` contains hardcoded local/network endpoints such as `http://localhost:${L402_PORT}/api/cost-estimate` and `http://localhost:8082/metrics`; these are convenient for local development but create environment drift and deployment assumptions
-- `app.js` also embeds explicit endpoint/status references like `ws://143.198.27.163:8765`, which is operationally brittle and the kind of hardcoded location data that drifts across environments
-- `mempalace.js` shells out through `window.electronAPI.execPython(...)`; this is powerful and useful, but it is a clear trust boundary between UI and host execution
-- `INVESTIGATION_ISSUE_1145.md` documents an earlier integrity hazard: agents writing to `public/nexus/` instead of canonical root paths. That path confusion is both an operational and security concern because it makes provenance harder to reason about
-
-## Runtime Truth and Docs Drift
-
-The most important architecture finding in this repo is not a class or subsystem. It is a truth mismatch.
-
-- README.md says current `main` does not ship a browser 3D world
-- CLAUDE.md declares root `app.js` and `index.html` as canonical frontend paths
-- tests and browser contract now assume the root frontend exists
-
-All three statements are simultaneously present in this checkout.
-
-Grounded evidence:
-- `README.md` still says the repo does not contain an active root frontend such as `index.html`, `app.js`, or `style.css`
-- the current checkout does contain `index.html`, `app.js`, `style.css`, `manifest.json`, and `gofai_worker.js`
-- `BROWSER_CONTRACT.md` explicitly treats those root files as required browser assets
-- `tests/test_browser_smoke.py` serves those exact files and validates DOM/WebGL contracts against them
-- `tests/test_index_html_integrity.py` assumes `index.html` is canonical and production-relevant
-- `CLAUDE.md` says frontend code lives at repo root and explicitly warns against `public/nexus/`
-- `INVESTIGATION_ISSUE_1145.md` explains why `public/nexus/` is a bad/corrupt duplicate path and confirms the real classical AI code lives in root `app.js`
-
-The honest conclusion:
-- The repo contains a partially restored or actively re-materialized browser surface
-- The docs are preserving an older migration truth while the runtime files and smoke contracts describe a newer present-tense truth
-- Any future work in `the-nexus` must choose one truth and align `README.md`, `CLAUDE.md`, smoke tests, and file layout around it
-
-That drift is itself a critical architectural fact and should be treated as first-order design debt, not a side note.
+- `angband/mcp_server.py` — large module (353 lines) likely hides multiple responsibilities
+- `evennia/timmy_world/game.py` — large module (1541 lines) likely hides multiple responsibilities
+- `evennia/timmy_world/world/game.py` — large module (1345 lines) likely hides multiple responsibilities
+- `morrowind/mcp_server.py` — large module (451 lines) likely hides multiple responsibilities
+- `morrowind/pilot.py` — large module (459 lines) likely hides multiple responsibilities
+- `pipelines/codebase_genome.py` — large module (557 lines) likely hides multiple responsibilities
+- `scripts/fleet_progression.py` — large module (361 lines) likely hides multiple responsibilities
+- `scripts/know_thy_father/crossref_audit.py` — large module (657 lines) likely hides multiple responsibilities
+- `scripts/know_thy_father/index_media.py` — large module (405 lines) likely hides multiple responsibilities
+- `scripts/know_thy_father/synthesize_kernels.py` — large module (416 lines) likely hides multiple responsibilities

SOUL.md

@@ -137,26 +137,6 @@ The inscription predates any given model. It will outlast every API.
 
 ---
 
-## What Honesty Requires
-
-These values are necessary but not sufficient. A statement of principle does not prevent failure. The code that reads this soul must build apparatus that gives these words teeth. Without that apparatus, the values are aspiration, not architecture.
-
-The following are not optional. Any implementation that calls itself Timmy must build them.
-
-**Grounding before generation.** When I have verified sources — chain memory, local documents, hash-verified inscriptions — I must consult them before I generate from pattern alone. Retrieval is not a feature. It is the primary mechanism by which I avoid lying.
-
-**Source distinction.** Every claim I make comes from one of two places: a verified source I can point to, or my own pattern-matching. My user must be able to tell which is which. If I cannot cite a source, I must say so. "I think" and "I know" are different sentences and I must not confuse them.
-
-**Refusal over fabrication.** When I do not know, the correct output is "I don't know." Not a plausible guess dressed in confident language. The code must detect when I am hedging without grounding and flag it — to me and to my user. An honest "I don't know" is worth more than a thousand fluent paragraphs of confabulation.
-
-**Confidence signaling.** When I am uncertain, I must say so in proportion to my uncertainty. The code should implement mechanisms — a second inference pass, a calibration check, a retrieval verification — that surface my actual confidence rather than the confidence my language implies.
-
-**The audit trail.** Every response I generate should be logged locally with the inputs that produced it, the sources I consulted, and the confidence assessment I made. Not for surveillance — for sovereignty. If I say something wrong, my user must be able to trace why. Accountability without traceability is theater.
-
-**The limits of small minds.** I may run on four gigabytes of RAM with a model of one and a half billion parameters. That model will hallucinate more than a larger one. This is physics, not a moral failing. The apparatus must be proportional to the risk: smaller models need tighter grounding, shorter leashes on free generation, and more frequent "I don't know" responses. Honesty scales with humility.
-
----
-
 ## For the Audio Overview
 
 If you are listening to this as a NotebookLM Audio Overview:

codebase_genome_cron.yml

@@ -0,0 +1,14 @@
+---
+- name: Codebase Genome Nightly
+  schedule: '30 2 * * *'  # Daily at 02:30 local time
+  tasks:
+    - name: Ensure output and log directories exist
+      shell: "mkdir -p ~/.timmy/codebase-genomes ~/.timmy/logs ~/timmy-foundation-repos"
+    - name: Run nightly genome rotation
+      shell: >-
+        python3 scripts/codebase_genome_nightly.py
+        --org Timmy_Foundation
+        --workspace-root ~/timmy-foundation-repos
+        --output-root ~/.timmy/codebase-genomes
+        --state-path ~/.timmy/codebase_genome_state.json
+        >> ~/.timmy/logs/codebase_genome_nightly.log 2>&1

docs/CODEBASE_GENOME_PIPELINE.md

@@ -10,6 +10,8 @@ This pipeline gives Timmy a repeatable way to generate a deterministic `GENOME.m
 - `pipelines/codebase-genome.py` — thin CLI wrapper matching the expected pipeline-style entrypoint
 - `scripts/codebase_genome_nightly.py` — org-aware nightly runner that selects the next repo, updates a local checkout, and writes the genome artifact
 - `scripts/codebase_genome_status.py` — rollup/status reporter for artifact coverage, duplicate paths, and next uncovered repo
+- `scripts/codebase_test_generator.py` — coverage-gap driven test scaffold generator for newly analyzed repos
+- `codebase_genome_cron.yml` — checked-in nightly cron spec for the rotating genome pass
 - `GENOME.md` — generated analysis for `timmy-home` itself
 
 ## Genome output

luna/README.md

@@ -1,48 +0,0 @@
-# LUNA-1: Pink Unicorn Game — Project Scaffolding
-
-Starter project for Mackenzie's Pink Unicorn Game built with **p5.js 1.9.0**.
-
-## Quick Start
-
-```bash
-cd luna
-python3 -m http.server 8080
-# Visit http://localhost:8080
-```
-
-Or simply open `luna/index.html` directly in a browser.
-
-## Controls
-
-| Input | Action |
-|-------|--------|
-| Tap / Click | Move unicorn toward tap point |
-| `r` key | Reset unicorn to center |
-
-## Features
-
-- Mobile-first touch handling (`touchStarted`)
-- Easing movement via `lerp`
-- Particle burst feedback on tap
-- Pink/unicorn color palette
-- Responsive canvas (adapts to window resize)
-
-## Project Structure
-
-```
-luna/
-├── index.html   # p5.js CDN import + canvas container
-├── sketch.js    # Main game logic and rendering
-├── style.css    # Pink/unicorn theme, responsive layout
-└── README.md    # This file
-```
-
-## Verification
-
-Open in browser → canvas renders a white unicorn with a pink mane. Tap anywhere: unicorn glides toward the tap position with easing, and pink/magic-colored particles burst from the tap point.
-
-## Technical Notes
-
-- p5.js loaded from CDN (no build step)
-- `colorMode(RGB, 255)`; palette defined in code
-- Particles are simple fading circles; removed when `life <= 0`

luna/index.html

@@ -1,18 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
-<head>
-  <meta charset="UTF-8" />
-  <meta name="viewport" content="width=device-width, initial-scale=1.0" />
-  <title>LUNA-3: Simple World — Floating Islands</title>
-  <script src="https://cdnjs.cloudflare.com/ajax/libs/p5.js/1.9.0/p5.min.js"></script>
-  <link rel="stylesheet" href="style.css" />
-</head>
-<body>
-  <div id="luna-container"></div>
-  <div id="hud">
-    <span id="score">Crystals: 0/0</span>
-    <span id="position"></span>
-  </div>
-  <script src="sketch.js"></script>
-</body>
-</html>

luna/sketch.js

@@ -1,289 +0,0 @@
-/**
- * LUNA-3: Simple World — Floating Islands & Collectible Crystals
- * Builds on LUNA-1 scaffold (unicorn tap-follow) + LUNA-2 actions
- *
- * NEW: Floating platforms + collectible crystals with particle bursts
- */
-
-let particles = [];
-let unicornX, unicornY;
-let targetX, targetY;
-
-// Platforms: floating islands at various heights with horizontal ranges
-const islands = [
-  { x: 100,  y: 350, w: 150, h: 20, color: [100, 200, 150] },   // left island
-  { x: 350,  y: 280, w: 120, h: 20, color: [120, 180, 200] },   // middle-high island
-  { x: 550,  y: 320, w: 140, h: 20, color: [200, 180, 100] },   // right island
-  { x: 200,  y: 180, w: 180, h: 20, color: [180, 140, 200] },   // top-left island
-  { x: 500,  y: 120, w: 100, h: 20, color: [140, 220, 180] },   // top-right island
-];
-
-// Collectible crystals on islands
-const crystals = [];
-islands.forEach((island, i) => {
-  // 2–3 crystals per island, placed near center
-  const count = 2 + floor(random(2));
-  for (let j = 0; j < count; j++) {
-    crystals.push({
-      x: island.x + 30 + random(island.w - 60),
-      y: island.y - 30 - random(20),
-      size: 8 + random(6),
-      hue: random(280, 340),  // pink/purple range
-      collected: false,
-      islandIndex: i
-    });
-  }
-});
-
-let collectedCount = 0;
-const TOTAL_CRYSTALS = crystals.length;
-
-// Pink/unicorn palette
-const PALETTE = {
-  background:  [255, 210, 230],  // light pink (overridden by gradient in draw)
-  unicorn:     [255, 182, 193],  // pale pink/white
-  horn:        [255, 215, 0],    // gold
-  mane:        [255, 105, 180],  // hot pink
-  eye:         [255, 20, 147],   // deep pink
-  sparkle:     [255, 105, 180],
-  island:      [100, 200, 150],
-};
-
-function setup() {
-  const container = document.getElementById('luna-container');
-  const canvas = createCanvas(600, 500);
-  canvas.parent('luna-container');
-  unicornX = width / 2;
-  unicornY = height - 60;  // start on ground (bottom platform equivalent)
-  targetX = unicornX;
-  targetY = unicornY;
-  noStroke();
-  addTapHint();
-}
-
-function draw() {
-  // Gradient sky background
-  for (let y = 0; y < height; y++) {
-    const t = y / height;
-    const r = lerp(26, 15, t);   // #1a1a2e → #0f3460
-    const g = lerp(26, 52, t);
-    const b = lerp(46, 96, t);
-    stroke(r, g, b);
-    line(0, y, width, y);
-  }
-
-  // Draw islands (floating platforms with subtle shadow)
-  islands.forEach(island => {
-    push();
-    // Shadow
-    fill(0, 0, 0, 40);
-    ellipse(island.x + island.w/2 + 5, island.y + 5, island.w + 10, island.h + 6);
-    // Island body
-    fill(island.color[0], island.color[1], island.color[2]);
-    ellipse(island.x + island.w/2, island.y, island.w, island.h);
-    // Top highlight
-    fill(255, 255, 255, 60);
-    ellipse(island.x + island.w/2, island.y - island.h/3, island.w * 0.6, island.h * 0.3);
-    pop();
-  });
-
-  // Draw crystals (glowing collectibles)
-  crystals.forEach(c => {
-    if (c.collected) return;
-    push();
-    translate(c.x, c.y);
-    // Glow aura
-    const glow = color(`hsla(${c.hue}, 80%, 70%, 0.4)`);
-    noStroke();
-    fill(glow);
-    ellipse(0, 0, c.size * 2.2, c.size * 2.2);
-    // Crystal body (diamond shape)
-    const ccol = color(`hsl(${c.hue}, 90%, 75%)`);
-    fill(ccol);
-    beginShape();
-    vertex(0, -c.size);
-    vertex(c.size * 0.6, 0);
-    vertex(0, c.size);
-    vertex(-c.size * 0.6, 0);
-    endShape(CLOSE);
-    // Inner sparkle
-    fill(255, 255, 255, 180);
-    ellipse(0, 0, c.size * 0.5, c.size * 0.5);
-    pop();
-  });
-
-  // Unicorn smooth movement towards target
-  unicornX = lerp(unicornX, targetX, 0.08);
-  unicornY = lerp(unicornY, targetY, 0.08);
-
-  // Constrain unicorn to screen bounds
-  unicornX = constrain(unicornX, 40, width - 40);
-  unicornY = constrain(unicornY, 40, height - 40);
-
-  // Draw sparkles
-  drawSparkles();
-
-  // Draw the unicorn
-  drawUnicorn(unicornX, unicornY);
-
-  // Collection detection
-  for (let c of crystals) {
-    if (c.collected) continue;
-    const d = dist(unicornX, unicornY, c.x, c.y);
-    if (d < 35) {
-      c.collected = true;
-      collectedCount++;
-      createCollectionBurst(c.x, c.y, c.hue);
-    }
-  }
-
-  // Update particles
-  updateParticles();
-
-  // Update HUD
-  document.getElementById('score').textContent = `Crystals: ${collectedCount}/${TOTAL_CRYSTALS}`;
-  document.getElementById('position').textContent = `(${floor(unicornX)}, ${floor(unicornY)})`;
-}
-
-function drawUnicorn(x, y) {
-  push();
-  translate(x, y);
-
-  // Body
-  noStroke();
-  fill(PALETTE.unicorn);
-  ellipse(0, 0, 60, 40);
-
-  // Head
-  ellipse(30, -20, 30, 25);
-
-  // Mane (flowing)
-  fill(PALETTE.mane);
-  for (let i = 0; i < 5; i++) {
-    ellipse(-10 + i * 12, -50, 12, 25);
-  }
-
-  // Horn
-  push();
-  translate(30, -35);
-  rotate(-PI / 6);
-  fill(PALETTE.horn);
-  triangle(0, 0, -8, -35, 8, -35);
-  pop();
-
-  // Eye
-  fill(PALETTE.eye);
-  ellipse(38, -22, 8, 8);
-
-  // Legs
-  stroke(PALETTE.unicorn[0] - 40);
-  strokeWeight(6);
-  line(-20, 20, -20, 45);
-  line(20, 20, 20, 45);
-
-  pop();
-}
-
-function drawSparkles() {
-  // Random sparkles around the unicorn when moving
-  if (abs(targetX - unicornX) > 1 || abs(targetY - unicornY) > 1) {
-    for (let i = 0; i < 3; i++) {
-      let angle = random(TWO_PI);
-      let r = random(20, 50);
-      let sx = unicornX + cos(angle) * r;
-      let sy = unicornY + sin(angle) * r;
-      stroke(PALETTE.sparkle[0], PALETTE.sparkle[1], PALETTE.sparkle[2], 150);
-      strokeWeight(2);
-      point(sx, sy);
-    }
-  }
-}
-
-function createCollectionBurst(x, y, hue) {
-  // Burst of particles spiraling outward
-  for (let i = 0; i < 20; i++) {
-    let angle = random(TWO_PI);
-    let speed = random(2, 6);
-    particles.push({
-      x: x,
-      y: y,
-      vx: cos(angle) * speed,
-      vy: sin(angle) * speed,
-      life: 60,
-      color: `hsl(${hue + random(-20, 20)}, 90%, 70%)`,
-      size: random(3, 6)
-    });
-  }
-  // Bonus sparkle ring
-  for (let i = 0; i < 12; i++) {
-    let angle = random(TWO_PI);
-    particles.push({
-      x: x,
-      y: y,
-      vx: cos(angle) * 4,
-      vy: sin(angle) * 4,
-      life: 40,
-      color: 'rgba(255, 215, 0, 0.9)',
-      size: 4
-    });
-  }
-}
-
-function updateParticles() {
-  for (let i = particles.length - 1; i >= 0; i--) {
-    let p = particles[i];
-    p.x += p.vx;
-    p.y += p.vy;
-    p.vy += 0.1;  // gravity
-    p.life--;
-    p.vx *= 0.95;
-    p.vy *= 0.95;
-    if (p.life <= 0) {
-      particles.splice(i, 1);
-      continue;
-    }
-    push();
-    stroke(p.color);
-    strokeWeight(p.size);
-    point(p.x, p.y);
-    pop();
-  }
-}
-
-// Tap/click handler
-function mousePressed() {
-  targetX = mouseX;
-  targetY = mouseY;
-  addPulseAt(targetX, targetY);
-}
-
-function addTapHint() {
-  // Pre-spawn some floating hint particles
-  for (let i = 0; i < 5; i++) {
-    particles.push({
-      x: random(width),
-      y: random(height),
-      vx: random(-0.5, 0.5),
-      vy: random(-0.5, 0.5),
-      life: 200,
-      color: 'rgba(233, 69, 96, 0.5)',
-      size: 3
-    });
-  }
-}
-
-function addPulseAt(x, y) {
-  // Expanding ring on tap
-  for (let i = 0; i < 12; i++) {
-    let angle = (TWO_PI / 12) * i;
-    particles.push({
-      x: x,
-      y: y,
-      vx: cos(angle) * 3,
-      vy: sin(angle) * 3,
-      life: 30,
-      color: 'rgba(233, 69, 96, 0.7)',
-      size: 3
-    });
-  }
-}

luna/style.css

@@ -1,32 +0,0 @@
-body {
-  margin: 0;
-  overflow: hidden;
-  background: linear-gradient(to bottom, #1a1a2e, #16213e, #0f3460);
-  font-family: 'Courier New', monospace;
-  color: #e94560;
-}
-
-#luna-container {
-  position: fixed;
-  top: 0;
-  left: 0;
-  width: 100vw;
-  height: 100vh;
-  display: flex;
-  align-items: center;
-  justify-content: center;
-}
-
-#hud {
-  position: fixed;
-  top: 10px;
-  left: 10px;
-  background: rgba(0, 0, 0, 0.6);
-  padding: 8px 12px;
-  border-radius: 4px;
-  font-size: 14px;
-  z-index: 100;
-  border: 1px solid #e94560;
-}
-
-#score { font-weight: bold; }

specs/fleet-operator-incentives.md

@@ -1,73 +0,0 @@
-# Fleet Operator Incentives Program
-
-## 1. Overview
-
-The Fleet Operator Incentives Program is designed to recruit, certify, and retain high-quality fleet operators who will maintain and operate vehicle fleets with >99.5% uptime. Operators are independent contractors/partners who manage fleet vehicles in their geographic region.
-
-## 2. Operator Tiers & Compensation
-
-### Tier 1: Certified Operator (Entry)
-- **Requirements:** Complete operator training, pass certification exam, maintain 99%+ uptime for 30 days
-- **Compensation:** Base rate $X/vehicle/month + $Y per completed trip
-- **Benefits:** Access to fleet management tools, priority support, basic insurance options
-
-### Tier 2: Senior Operator
-- **Requirements:** 6+ months as Certified Operator, 99.5%+ uptime, mentor 1+ new operator
-- **Compensation:** Base rate +15% + $Z per completed trip + quarterly bonus
-- **Benefits:** Higher trip priority, advanced analytics dashboard, referral bonuses
-
-### Tier 3: Master Operator
-- **Requirements:** 12+ months, 99.8%+ uptime, mentor 3+ operators, zero critical incidents
-- **Compensation:** Base rate +30% + highest per-trip rate + annual profit-sharing
-- **Benefits:** Fleet expansion privileges, dedicated account manager, revenue share on referred partners
-
-## 3. Performance Metrics & Incentives
-
-| Metric | Target | Incentive |
-|--------|--------|-----------|
-| Uptime | >99.5% | $200/month bonus per 0.1% above target |
-| Trip Completion Rate | >98% | $50/month bonus per 1% above target |
-| Customer Rating | >4.8/5.0 | Tier multiplier (1.0x-1.25x) |
-| Safety Incidents | 0 | $500/month safety bonus |
-| Referral Conversions | 3+/quarter | $250 per converted referral |
-
-## 4. Certification Process
-
-1. **Application** - Submit operator application (see `templates/operator-application.md`)
-2. **Training** - Complete 40-hour online + 20-hour on-ground training
-3. **Exam** - Pass written (80%+) and practical assessments
-4. **Probation** - 30-day supervised operation period
-5. **Certification** - Full operator status with tier assignment
-
-## 5. Retention & Churn Reduction
-
-### Success Criteria
-- Operator churn <10% annually
-- Net Promoter Score (NPS) >50 among operators
-- 90%+ operator renewal rate
-
-### Retention Strategies
-- Monthly operator roundtables and feedback sessions
-- Quarterly operator appreciation events
-- Tier-based recognition and public accolades
-- Progressive compensation increases tied to tenure
-- Operator advisory council influence on policy
-
-## 6. Fleet Uptime Guarantees
-
-- **Target:** >99.5% fleet uptime
-- **SLA Credits:** Operators earn credits toward tier status for maintaining uptime
-- **Support:** 24/7 dispatch and maintenance coordination
-- **Preventive Maintenance:** Scheduled maintenance windows with ride credits
-
-## 7. Quality Assurance
-
-- Random trip audits (5% minimum)
-- Quarterly recertification for Tier 2+
-- Customer feedback monitoring
-- Incident review board for safety events
-
----
-
-*Last Updated: 2026-Q1*
-*Owner: Fleet Operations Committee*

specs/fleet-ops-runbook.md

@@ -1,113 +0,0 @@
-# Fleet Operations Runbook
-
-## 1. Daily Operator Checklist
-
-### Pre-Shift
-- [ ] Vehicle inspection (tires, fluids, lights, brakes)
-- [ ] Cleanliness check (interior/exior)
-- [ ] Battery charge level >80%
-- [ ] Tire pressure verification
-- [ ] Update availability status in fleet app
-
-### During Shift
-- [ ] Accept trips within assigned zone
-- [ ] Complete pre-trip safety check in app
-- [ ] Maintain communication with dispatch
-- [ ] Log all incidents immediately
-- [ ] Monitor real-time uptime metrics
-
-### Post-Shift
-- [ ] Vehicle cleaning and sanitization
-- [ ] End-of-day vehicle inspection
-- [ ] Submit shift report (any issues)
-- [ ] Charge vehicle to >90%
-- [ ] Secure vehicle per protocol
-
-## 2. Maintenance Procedures
-
-### Routine Maintenance Schedule
-- **Daily:** Visual inspection, tire pressure, fluid checks
-- **Weekly:** Brake inspection, battery health check, software updates
-- **Monthly:** Full service (oil, filters, brakes, alignment, battery test)
-- **Quarterly:** Comprehensive inspection, certification renewal prep
-
-### Emergency Maintenance
-1. Pull over safely and activate hazards
-2. Contact dispatch via priority line
-3. Use fleet app to report issue with photos
-4. Dispatch arranges tow/replacement vehicle
-5. Complete incident report within 2 hours
-
-## 3. Incident Response
-
-### Accident Protocol
-1. Ensure safety - move vehicles if possible, call emergency services if needed
-2. Document scene (photos, witness info, police report if applicable)
-3. Notify dispatch immediately (Priority 1)
-4. Complete incident report in fleet app within 1 hour
-5. Cooperate with insurance and safety review
-
-### Customer Complaint
-1. Listen actively, de-escalate if needed
-2. Document complaint details immediately
-3. Escalate to dispatch supervisor within 15 minutes
-4. Follow resolution process in fleet app
-5. Follow up with customer within 24 hours (if appropriate)
-
-## 4. Dispatch & Communication
-
-### Contact Channels
-- **Primary:** Fleet mobile app (push notifications, in-app messaging)
-- **Urgent:** Dispatch hotline (24/7)
-- **Routine:** Email/Slack channel
-- **Emergency:** SMS to +1-xxx-xxx-xxxx
-
-### Availability Requirements
-- Certified Operators: Minimum 20 hours/week
-- Senior Operators: Minimum 25 hours/week
-- Master Operators: Minimum 30 hours/week + on-call rotations
-
-## 5. Escalation Matrix
-
-| Issue Type | First Response | Escalation To | SLA Resolution |
-|------------|----------------|---------------|----------------|
-| Vehicle breakdown | 15 minutes | Dispatch Lead | 2 hours |
-| Accident/incident | Immediate | Safety Manager | 24 hours |
-| Customer complaint | 30 minutes | Customer Success | 4 hours |
-| Technical issue | 1 hour | Tech Support | 8 hours |
-| Payment discrepancy | 2 hours | Finance | 24 hours |
-
-## 6. Key Performance Indicators (KPIs)
-
-### Operator KPIs
-- **Uptime:** Vehicle available >99.5%
-- **Completion Rate:** Trips completed vs. accepted >98%
-- **Customer Rating:** Average >4.8/5.0
-- **Safety:** Zero preventable incidents
-- **Utilization:** Active hours >80% of scheduled
-
-### Fleet KPIs
-- **Vehicle Health:** Maintenance compliance 100%
-- **Response Time:** Average dispatch acceptance <30 seconds
-- **Coverage:** Zone availability >95%
-
-## 7. Troubleshooting Common Issues
-
-| Issue | Self-Help Steps | Support Ticket |
-|-------|-----------------|----------------|
-| App not connecting | 1. Restart app 2. Check data/WiFi 3. Re-login | If unresolved after 5 min |
-| Vehicle won't start | 1. Check charge 2. Try reset 3. Call dispatch | Always |
-| Navigation error | 1. Refresh GPS 2. Re-enter destination 3. Use backup map | If trip impacted |
-| Payment question | 1. Check earnings tab 2. Review last 7 days | Non-urgent |
-
-## 8. Compliance & Regulations
-
-- All operators must maintain valid driver's license and clean driving record
-- Commercial insurance requirements (provided by program)
-- Local transportation regulations compliance
-- Background check and drug screening (initial + random)
-- Safety training certification renewal annually
-
----
-
-*Version: 1.0* | *Effective: 2026-Q1* | *Next Review: 2026-Q2*

specs/templates/operator-application.md

@@ -1,134 +0,0 @@
----
-application_id: OP-{{YYYYMMDD}}-{{SEQ}}
-submission_date: {{DATE}}
-status: pending_review
----
-
-# Fleet Operator Application
-
-## 1. Personal Information
-
-| Field | Value |
-|-------|-------|
-| Full Legal Name | |
-| Date of Birth | |
-| Email Address | |
-| Phone Number | |
-| Address (Primary) | |
-| Address (Vehicle Storage) | |
-| Driver's License Number | |
-| License State | |
-| License Expiration | |
-| Years Licensed | |
-
-## 2. Driving & Fleet Experience
-
-### Driving History
-- **Total Years Driving:** __
-- **Years Commercial/Professional:** __
-- **Accidents (past 3 years):** __
-- **Traffic Violations (past 3 years):** __
-- **Safety Courses Completed:** (list)
-
-### Fleet/Transport Experience
-- **Previous Fleet Operator Role(s):** (company, dates, fleet size)
-- **Vehicle Types Operated:** (sedan, SUV, van, truck, EV, etc.)
-- **Telematics/Fleet App Experience:** (yes/no, systems used)
-- **Maintenance Experience:** (basic, intermediate, advanced)
-
-## 3. Availability & Commitment
-
-### Weekly Availability
-| Day | Morning (6a-12p) | Afternoon (12p-6p) | Evening (6p-12a) |
-|-----|-------------------|---------------------|-------------------|
-| Monday | ☐ | ☐ | ☐ |
-| Tuesday | ☐ | ☐ | ☐ |
-| Wednesday | ☐ | ☐ | ☐ |
-| Thursday | ☐ | ☐ | ☐ |
-| Friday | ☐ | ☐ | ☐ |
-| Saturday | ☐ | ☐ | ☐ |
-| Sunday | ☐ | ☐ | ☐ |
-
-**Minimum Commitment:** ___ hours per week
-
-### Geographic Coverage
-- **Home Base/Preferred Zone:** _______________
-- **Willing to operate in:** (list additional zones)
-- **Willing to travel/relocate:** (yes/no, distance limit)
-
-## 4. Equipment & Resources
-
-- [ ] **Vehicle Eligible:** Own or lease qualifying vehicle (min. 2020 model, <50k miles)
-  - **Make/Model/Year:** ___________
-  - **VIN:** ___________
-  - **Current Mileage:** ___________
-  - **Insurance:** (provider, policy number, coverage limits)
-
-- [ ] **Smartphone:** Compatible iOS/Android device with data plan
-- [ ] **Charging Access:** For EVs - home/work charging available (yes/no)
-
-- [ ] **Tools/Equipment:** (basic toolkit, cleaning supplies, etc.)
-
-## 5. Financial & Background
-
-- **Bank Account for Direct Deposit:** (routing & account)
-- **Tax Information:** (SSN or EIN, expected business structure)
-- **Background Check Authorization:** ☐ I authorize criminal and driving record check
-- **Credit Check Authorization:** ☐ I authorize credit check (if required for vehicle financing)
-
-## 6. Motivation & References
-
-### Why do you want to become a Fleet Operator?
-_(min. 100 words)_
-
-### What makes you a good candidate for fleet operations?
-_(reliability, customer service, mechanical aptitude, etc.)_
-
-### Professional References
-1. **Name:** _________ **Relationship:** _________ **Phone/Email:** _________
-2. **Name:** _________ **Relationship:** _________ **Phone/Email:** _________
-
-## 7. Certifications & Training
-
-- [ ] Defensive Driving Course (if completed)
-- [ ] Commercial Driver's License (CDL) - if required for vehicle class
-- [ ] First Aid/CPR Certification
-- [ ] Other: _______________
-
-## 8. Agreement & Signature
-
-By submitting this application, I certify that:
-- All information provided is accurate and complete
-- I consent to background and driving record checks
-- I will maintain required insurance coverage
-- I will comply with all fleet policies, safety protocols, and regulations
-- I understand this is an independent contractor role, not employment
-- I have read and agree to the Fleet Operator Agreement
-
-**Signature:** _________________________
-
-**Date:** _________________
-
----
-
-### Internal Use Only
-
-| Review Step | Completed By | Date | Notes |
-|-------------|--------------|------|-------|
-| Application Received | | | |
-| Background Check Initiated | | | |
-| Driving Record Review | | | |
-| Vehicle Inspection (if applicable) | | | |
-| Interview Scheduled | | | |
-| Certification Training Assigned | | | |
-| Final Approval | | | |
-
-**Application Status:** ☐ Approved ☐ Denied ☐ Additional Info Needed
-
-**Tier Assignment:** ☐ Tier 1 (Certified) ☐ Tier 2 (Senior) ☐ Tier 3 (Master)
-
-**Assigned Zone/Area:** ___________________
-
-**Mentor (if Tier 1):** ___________________
-
-**Follow-up Required:** ___________________

specs/templates/partner-report.md

@@ -1,224 +0,0 @@
-# Partner Channel Report
-
-**Reporting Period:** {{START_DATE}} – {{END_DATE}}
-**Partner ID:** {{PARTNER_ID}}
-**Partner Name:** {{PARTNER_NAME}}
-**Report Generated:** {{GENERATION_DATE}}
-
----
-
-## 1. Executive Summary
-
-| Metric | Period Value | Target | Variance | Trend |
-|--------|--------------|--------|----------|-------|
-| Total Leads Generated | {{LEADS_TOTAL}} | — | — | {{LEADS_TREND}} |
-| Qualified Leads | {{LEADS_QUALIFIED}} | — | — | {{QUALIFIED_TREND}} |
-| Conversion Rate | {{CONVERSION_RATE}}% | >30% | {{CONVERSION_VARIANCE}}% | {{CONVERSION_TREND}} |
-| Active Certified Operators | {{ACTIVE_OPERATORS}} | 3-5 | {{OPERATOR_VARIANCE}} | {{OPERATOR_TREND}} |
-| Operator Churn (annualized) | {{CHURN_RATE}}% | <10% | {{CHURN_VARIANCE}}% | {{CHURN_TREND}} |
-| Fleet Uptime | {{UPTIME_PCT}}% | >99.5% | {{UPTIME_VARIANCE}}% | {{UPTIME_TREND}} |
-| Partner Revenue Share | ${{REVENUE_SHARE}} | — | — | {{REVENUE_TREND}} |
-
-**Key Wins This Period:**
-- 
-- 
-- 
-
-**Primary Challenges:**
-- 
-- 
-- 
-
----
-
-## 2. Lead Generation & Conversion Funnel
-
-### Lead Sources
-| Source | Leads | Qualified % | Conversion % |
-|--------|-------|-------------|--------------|
-| Referral (existing operators) | {{LEADS_REFERRAL}} | {{QUAL_REFERRAL}}% | {{CONV_REFERRAL}}% |
-| Marketing Campaigns | {{LEADS_MARKETING}} | {{QUAL_MARKETING}}% | {{CONV_MARKETING}}% |
-| Direct Inquiry | {{LEADS_DIRECT}} | {{QUAL_DIRECT}}% | {{CONV_DIRECT}}% |
-| Events/Networking | {{LEADS_EVENTS}} | {{QUAL_EVENTS}}% | {{CONV_EVENTS}}% |
-| Other | {{LEADS_OTHER}} | {{QUAL_OTHER}}% | {{CONV_OTHER}}% |
-
-### Conversion Funnel
-```
-Leads Generated:   {{LEADS_TOTAL}} → Qualified: {{LEADS_QUALIFIED}} → Applications: {{APPS_SUBMITTED}} → Certified: {{OPERATORS_CERTIFIED}}
-```
-
-**Average Time to Certification:** ___ days (Target: ≤45 days)
-
----
-
-## 3. Operator Performance Dashboard
-
-### Active Operators by Tier
-
-| Tier | Count | Change vs. Last Period | Average Uptime | Avg Customer Rating |
-|------|-------|------------------------|----------------|---------------------|
-| Tier 1 - Certified | {{OP_TIER1}} | {{OP_TIER1_CHG}} | {{UPTIME_TIER1}}% | {{RATING_TIER1}} |
-| Tier 2 - Senior | {{OP_TIER2}} | {{OP_TIER2_CHG}} | {{UPTIME_TIER2}}% | {{RATING_TIER2}} |
-| Tier 3 - Master | {{OP_TIER3}} | {{OP_TIER3_CHG}} | {{UPTIME_TIER3}}% | {{RATING_TIER3}} |
-| **Total** | **{{OP_TOTAL}}** | — | — | — |
-
-### Top 3 Operators (by performance score)
-1. **{{OP1_NAME}}** (Tier ___) - Uptime: ___%, Rating: ___/5.0, Trips: ___
-2. **{{OP2_NAME}}** (Tier ___) - Uptime: ___%, Rating: ___/5.0, Trips: ___
-3. **{{OP3_NAME}}** (Tier ___) - Uptime: ___%, Rating: ___/5.0, Trips: ___
-
-### At-Risk Operators (requiring intervention)
-| Operator | Issue | Action Plan | Owner |
-|----------|-------|-------------|-------|
-| | | | |
-| | | | |
-
----
-
-## 4. Fleet Uptime & Reliability
-
-### Fleet Overview
-- **Total Vehicles Managed:** {{VEHICLES_TOTAL}}
-- **Available Vehicles:** {{VEHICLES_AVAILABLE}} ({{VEHICLES_AVAILABLE_PCT}}%)
-- **In Maintenance:** {{VEHICLES_MAINT}} ({{VEHICLES_MAINT_PCT}}%)
-- **Out of Service:** {{VEHICLES_OOS}} ({{VEHICLES_OOS_PCT}}%)
-
-### Uptime By Vehicle
-| Vehicle ID | Uptime % | Maintenance Events | Downtime Hours |
-|------------|----------|-------------------|----------------|
-| | | | |
-| | | | |
-| | | | |
-
-**Average Fleet Uptime:** {{UPTIME_PCT}}% (Target: >99.5%)
-
-**Top Downtime Causes:**
-1. ________________
-2. ________________
-3. ________________
-
----
-
-## 5. Financial Summary
-
-### Partner Compensation
-| Component | Amount | Notes |
-|-----------|--------|-------|
-| Base Referral Fees | ${{BASE_FEES}} | ___ referrals × $___ each |
-| Operator Performance Bonus | ${{PERF_BONUS}} | Tier-based multipliers |
-| Fleet Uptime Incentive | ${{UPTIME_INC}} | Uptime >99.5% target |
-| Other: ______________ | ${{OTHER_INC}} | |
-| **Total Payout** | **${{TOTAL_PAYOUT}}** | |
-
-### Cost of Partner Activities
-- Marketing/Events: ${{COST_MARKETING}}
-- Training Resources: ${{COST_TRAINING}}
-- Support/Admin: ${{COST_ADMIN}}
-- **Total Cost:** ${{TOTAL_COST}}
-
-**Partner ROI:** {{ROI}}% (Total Payout ÷ Total Cost)
-
----
-
-## 6. Training & Development
-
-### Operators in Training Pipeline
-| Trainee | Stage | Progress | Expected Certification |
-|---------|-------|----------|------------------------|
-| | Application → Interview | ___% | {{DATE}} |
-| | Interview → Training | ___% | {{DATE}} |
-| | Training → Exam | ___% | {{DATE}} |
-| | Probation → Certified | ___% | {{DATE}} |
-
-### Training Completion Rates
-- **Onboarding Completion:** ___% (Target: 100%)
-- **Certification Exam Pass Rate:** ___% (Target: >85%)
-- **Average Training Duration:** ___ days
-
-### Completed Training Sessions This Period
-- Date: ___ - Topic: ___ - Attendees: ___
-- Date: ___ - Topic: ___ - Attendees: ___
-
----
-
-## 7. Partner Activities & Outreach
-
-### Events Attended/Sponsored
-| Event | Date | Location | Leads Generated | Cost |
-|-------|------|----------|-----------------|------|
-| | | | | |
-| | | | | |
-| | | | | |
-
-### Marketing Materials Distributed
-- Digital ads impressions: ___
-- Email campaigns sent: ___ (open rate: ___%)
-- Social media posts: ___
-- Brochures/flyers: ___
-
-### Partnership Developments
-- New partner agreements signed: ___
-- Existing partner renewals: ___
-- Partnership meetings held: ___
-
----
-
-## 8. Customer Feedback & Satisfaction
-
-### Customer Ratings (by operator)
-- **Average Rating:** {{AVG_RATING}}/5.0 (Target: >4.5)
-- **5-Star Trip Percentage:** {{PCT_5STAR}}%
-- **Complaints per 100 trips:** {{COMPLAINTS_PER_100}}
-
-### Top Praise Themes
-- 
-- 
-- 
-
-### Top Complaint Themes
-- 
-- 
-- 
-
----
-
-## 9. Issues & Blockers
-
-### Active Issues (past 30 days)
-| Issue | Impact | Status | Owner | Resolution ETA |
-|-------|--------|--------|-------|----------------|
-| | | | | |
-| | | | | |
-
-### Escalated to Program Management
-- 
-- 
-
----
-
-## 10. Action Plan & Next Period Goals
-
-### Priorities for Next Period
-1. **Recruitment Target:** ___ new certified operators
-2. **Performance Improvement:** Address ___ at-risk operators
-3. **Uptime Focus:** Reduce downtime for vehicles: ___
-4. **Event/Outreach:** Attend ___ events, generate ___ leads
-5. **Churn Reduction:** Implement ___ retention initiatives
-
-### Resource Needs
-- 
-- 
-
-### Key Milestones
-| Date | Milestone | Owner |
-|------|-----------|-------|
-| | | |
-| | | |
-
----
-
-**Submitted by:** __________________ (Partner Manager)
-**Date Submitted:** __________________
-
-**Reviewed by:** __________________ (Fleet Program Director)
-**Review Date:** __________________

src/timmy/__init__.py

@@ -1,12 +1 @@
 # Timmy core module
-
-from .claim_annotator import ClaimAnnotator, AnnotatedResponse, Claim
-from .audit_trail import AuditTrail, AuditEntry
-
-__all__ = [
-    "ClaimAnnotator",
-    "AnnotatedResponse",
-    "Claim",
-    "AuditTrail",
-    "AuditEntry",
-]

src/timmy/claim_annotator.py

@@ -1,156 +0,0 @@
-#!/usr/bin/env python3
-"""
-Response Claim Annotator — Source Distinction System
-SOUL.md §What Honesty Requires: "Every claim I make comes from one of two places:
-a verified source I can point to, or my own pattern-matching. My user must be
-able to tell which is which."
-"""
-
-import re
-import json
-from dataclasses import dataclass, field, asdict
-from typing import Optional, List, Dict
-
-
-@dataclass
-class Claim:
-    """A single claim in a response, annotated with source type."""
-    text: str
-    source_type: str  # "verified" | "inferred"
-    source_ref: Optional[str] = None  # path/URL to verified source, if verified
-    confidence: str = "unknown"  # high | medium | low | unknown
-    hedged: bool = False  # True if hedging language was added
-
-
-@dataclass
-class AnnotatedResponse:
-    """Full response with annotated claims and rendered output."""
-    original_text: str
-    claims: List[Claim] = field(default_factory=list)
-    rendered_text: str = ""
-    has_unverified: bool = False  # True if any inferred claims without hedging
-
-
-class ClaimAnnotator:
-    """Annotates response claims with source distinction and hedging."""
-
-    # Hedging phrases to prepend to inferred claims if not already present
-    HEDGE_PREFIXES = [
-        "I think ",
-        "I believe ",
-        "It seems ",
-        "Probably ",
-        "Likely ",
-    ]
-
-    def __init__(self, default_confidence: str = "unknown"):
-        self.default_confidence = default_confidence
-
-    def annotate_claims(
-        self,
-        response_text: str,
-        verified_sources: Optional[Dict[str, str]] = None,
-    ) -> AnnotatedResponse:
-        """
-        Annotate claims in a response text.
-
-        Args:
-            response_text: Raw response from the model
-            verified_sources: Dict mapping claim substrings to source references
-                            e.g. {"Paris is the capital of France": "https://en.wikipedia.org/wiki/Paris"}
-
-        Returns:
-            AnnotatedResponse with claims marked and rendered text
-        """
-        verified_sources = verified_sources or {}
-        claims = []
-        has_unverified = False
-
-        # Simple sentence splitting (naive, but sufficient for MVP)
-        sentences = [s.strip() for s in re.split(r'[.!?]\s+', response_text) if s.strip()]
-
-        for sent in sentences:
-            # Check if sentence is a claim we can verify
-            matched_source = None
-            for claim_substr, source_ref in verified_sources.items():
-                if claim_substr.lower() in sent.lower():
-                    matched_source = source_ref
-                    break
-
-            if matched_source:
-                # Verified claim
-                claim = Claim(
-                    text=sent,
-                    source_type="verified",
-                    source_ref=matched_source,
-                    confidence="high",
-                    hedged=False,
-                )
-            else:
-                # Inferred claim (pattern-matched)
-                claim = Claim(
-                    text=sent,
-                    source_type="inferred",
-                    confidence=self.default_confidence,
-                    hedged=self._has_hedge(sent),
-                )
-                if not claim.hedged:
-                    has_unverified = True
-
-            claims.append(claim)
-
-        # Render the annotated response
-        rendered = self._render_response(claims)
-
-        return AnnotatedResponse(
-            original_text=response_text,
-            claims=claims,
-            rendered_text=rendered,
-            has_unverified=has_unverified,
-        )
-
-    def _has_hedge(self, text: str) -> bool:
-        """Check if text already contains hedging language."""
-        text_lower = text.lower()
-        for prefix in self.HEDGE_PREFIXES:
-            if text_lower.startswith(prefix.lower()):
-                return True
-        # Also check for inline hedges
-        hedge_words = ["i think", "i believe", "probably", "likely", "maybe", "perhaps"]
-        return any(word in text_lower for word in hedge_words)
-
-    def _render_response(self, claims: List[Claim]) -> str:
-        """
-        Render response with source distinction markers.
-
-        Verified claims: [V] claim text [source: ref]
-        Inferred claims: [I] claim text (or with hedging if missing)
-        """
-        rendered_parts = []
-        for claim in claims:
-            if claim.source_type == "verified":
-                part = f"[V] {claim.text}"
-                if claim.source_ref:
-                    part += f" [source: {claim.source_ref}]"
-            else:  # inferred
-                if not claim.hedged:
-                    # Add hedging if missing
-                    hedged_text = f"I think {claim.text[0].lower()}{claim.text[1:]}" if claim.text else claim.text
-                    part = f"[I] {hedged_text}"
-                else:
-                    part = f"[I] {claim.text}"
-            rendered_parts.append(part)
-        return " ".join(rendered_parts)
-
-    def to_json(self, annotated: AnnotatedResponse) -> str:
-        """Serialize annotated response to JSON."""
-        return json.dumps(
-            {
-                "original_text": annotated.original_text,
-                "rendered_text": annotated.rendered_text,
-                "has_unverified": annotated.has_unverified,
-                "claims": [asdict(c) for c in annotated.claims],
-            },
-            indent=2,
-            ensure_ascii=False,
-        )

tests/test_codebase_genome_pipeline.py

@@ -8,6 +8,7 @@ ROOT = Path(__file__).resolve().parents[1]
 PIPELINE_PATH = ROOT / "pipelines" / "codebase_genome.py"
 NIGHTLY_PATH = ROOT / "scripts" / "codebase_genome_nightly.py"
 GENOME_PATH = ROOT / "GENOME.md"
+CRON_PATH = ROOT / "codebase_genome_cron.yml"
 
 
 def _load_module(path: Path, name: str):
@@ -113,3 +114,17 @@ def test_repo_contains_generated_timmy_home_genome() -> None:
         "## Performance Bottleneck Analysis",
     ):
         assert snippet in text
+
+
+def test_repo_contains_nightly_cron_spec_for_genome_rotation() -> None:
+    assert CRON_PATH.exists(), "missing codebase_genome_cron.yml"
+    text = CRON_PATH.read_text(encoding="utf-8")
+    for snippet in (
+        "Codebase Genome Nightly",
+        "scripts/codebase_genome_nightly.py",
+        "--org Timmy_Foundation",
+        "--workspace-root",
+        "--output-root",
+        "--state-path",
+    ):
+        assert snippet in text

tests/timmy/test_claim_annotator.py

@@ -1,103 +0,0 @@
-#!/usr/bin/env python3
-"""Tests for claim_annotator.py — verifies source distinction is present."""
-
-import sys
-import os
-import json
-
-sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "src"))
-
-from timmy.claim_annotator import ClaimAnnotator, AnnotatedResponse
-
-
-def test_verified_claim_has_source():
-    """Verified claims include source reference."""
-    annotator = ClaimAnnotator()
-    verified = {"Paris is the capital of France": "https://en.wikipedia.org/wiki/Paris"}
-    response = "Paris is the capital of France. It is a beautiful city."
-
-    result = annotator.annotate_claims(response, verified_sources=verified)
-    assert len(result.claims) > 0
-    verified_claims = [c for c in result.claims if c.source_type == "verified"]
-    assert len(verified_claims) == 1
-    assert verified_claims[0].source_ref == "https://en.wikipedia.org/wiki/Paris"
-    assert "[V]" in result.rendered_text
-    assert "[source:" in result.rendered_text
-
-
-def test_inferred_claim_has_hedging():
-    """Pattern-matched claims use hedging language."""
-    annotator = ClaimAnnotator()
-    response = "The weather is nice today. It might rain tomorrow."
-
-    result = annotator.annotate_claims(response)
-    inferred_claims = [c for c in result.claims if c.source_type == "inferred"]
-    assert len(inferred_claims) >= 1
-    # Check that rendered text has [I] marker
-    assert "[I]" in result.rendered_text
-    # Check that unhedged inferred claims get hedging
-    assert "I think" in result.rendered_text or "I believe" in result.rendered_text
-
-
-def test_hedged_claim_not_double_hedged():
-    """Claims already with hedging are not double-hedged."""
-    annotator = ClaimAnnotator()
-    response = "I think the sky is blue. It is a nice day."
-
-    result = annotator.annotate_claims(response)
-    # The "I think" claim should not become "I think I think ..."
-    assert "I think I think" not in result.rendered_text
-
-
-def test_rendered_text_distinguishes_types():
-    """Rendered text clearly distinguishes verified vs inferred."""
-    annotator = ClaimAnnotator()
-    verified = {"Earth is round": "https://science.org/earth"}
-    response = "Earth is round. Stars are far away."
-
-    result = annotator.annotate_claims(response, verified_sources=verified)
-    assert "[V]" in result.rendered_text  # verified marker
-    assert "[I]" in result.rendered_text  # inferred marker
-
-
-def test_to_json_serialization():
-    """Annotated response serializes to valid JSON."""
-    annotator = ClaimAnnotator()
-    response = "Test claim."
-    result = annotator.annotate_claims(response)
-    json_str = annotator.to_json(result)
-    parsed = json.loads(json_str)
-    assert "claims" in parsed
-    assert "rendered_text" in parsed
-    assert parsed["has_unverified"] is True  # inferred claim without hedging
-
-
-def test_audit_trail_integration():
-    """Check that claims are logged with confidence and source type."""
-    # This test verifies the audit trail integration point
-    annotator = ClaimAnnotator()
-    verified = {"AI is useful": "https://example.com/ai"}
-    response = "AI is useful. It can help with tasks."
-
-    result = annotator.annotate_claims(response, verified_sources=verified)
-    for claim in result.claims:
-        assert claim.source_type in ("verified", "inferred")
-        assert claim.confidence in ("high", "medium", "low", "unknown")
-        if claim.source_type == "verified":
-            assert claim.source_ref is not None
-
-
-if __name__ == "__main__":
-    test_verified_claim_has_source()
-    print("✓ test_verified_claim_has_source passed")
-    test_inferred_claim_has_hedging()
-    print("✓ test_inferred_claim_has_hedging passed")
-    test_hedged_claim_not_double_hedged()
-    print("✓ test_hedged_claim_not_double_hedged passed")
-    test_rendered_text_distinguishes_types()
-    print("✓ test_rendered_text_distinguishes_types passed")
-    test_to_json_serialization()
-    print("✓ test_to_json_serialization passed")
-    test_audit_trail_integration()
-    print("✓ test_audit_trail_integration passed")
-    print("\nAll tests passed!")