Alexander Whitestone 431cddf7f2 fix: replace worktrees with fresh clones, fix watchdog issue filing ...

- Workers now git clone --depth=1 per issue instead of sharing base repos
  with worktrees. Eliminates all contention and branch collision errors.
- Watchdog file_issue uses temp file + sys.argv for safe JSON escaping
- Watchdog zombie detection only kills processes >5min old (was killing
  legitimate git pushes from active workers)
- Simplified cleanup to plain rm -rf (no worktree bookkeeping needed)

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>

2026-03-22 21:35:56 -04:00

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