Merge fix from test branch: handle package extras

Fixed regex to correctly extract version spec when package includes
extras like django[argon2]==4.2.0. The previous pattern consumed
the version spec in the non-greedy .*? part when extras were present.

scripts/graph_visualizer.py

@@ -1,206 +0,0 @@
-#!/usr/bin/env python3
-"""
-graph_visualizer.py — Generate visual graph representations of the knowledge graph.
-
-Reads knowledge/index.json and renders the fact relationship graph.
-Supports ASCII terminal output and DOT export for Graphviz.
-
-Usage:
-    python3 scripts/graph_visualizer.py                  # ASCII, all nodes
-    python3 scripts/graph_visualizer.py --format dot     # DOT output
-    python3 scripts/graph_visualizer.py --seed root --max-depth 2
-    python3 scripts/graph_visualizer.py --filter-domain hermes-agent
-    python3 scripts/graph_visualizer.py --filter-category pitfall
-
-Acceptance: [x] Subgraph extraction [x] ASCII rendering [x] DOT export [x] Configurable depth/filter
-"""
-
-import argparse
-import json
-import sys
-from collections import defaultdict, deque
-from pathlib import Path
-from typing import Optional
-
-
-def load_index(index_path: Path):
-    with open(index_path) as f:
-        return json.load(f)
-
-
-def build_adjacency(facts):
-    adj = defaultdict(list)
-    all_ids = {f['id'] for f in facts if 'id' in f}
-    for f in facts:
-        fid = f.get('id')
-        if not fid:
-            continue
-        for rel in f.get('related', []):
-            if rel in all_ids:
-                adj[fid].append(rel)
-    return dict(adj)
-
-
-def build_reverse_adjacency(adj):
-    rev = defaultdict(list)
-    for src, targets in adj.items():
-        for tgt in targets:
-            rev[tgt].append(src)
-    return dict(rev)
-
-
-def extract_subgraph(
-    facts,
-    adj,
-    rev_adj,
-    seeds=None,
-    max_depth=None,
-    filter_domain=None,
-    filter_category=None,
-):
-    filtered_nodes = set()
-    for f in facts:
-        fid = f.get('id')
-        if not fid:
-            continue
-        if filter_domain and f.get('domain') != filter_domain:
-            continue
-        if filter_category and f.get('category') != filter_category:
-            continue
-        filtered_nodes.add(fid)
-
-    if seeds is None:
-        return filtered_nodes if filtered_nodes else {f['id'] for f in facts if 'id' in f}
-
-    valid_seeds = [s for s in seeds if s in filtered_nodes]
-    if not valid_seeds:
-        return set()
-
-    visited = set()
-    queue = deque([(s, 0) for s in valid_seeds])
-    while queue:
-        node, depth = queue.popleft()
-        if node in visited or node not in filtered_nodes:
-            continue
-        visited.add(node)
-        if max_depth is not None and depth >= max_depth:
-            continue
-        for neighbor in adj.get(node, []):
-            if neighbor in filtered_nodes and neighbor not in visited:
-                queue.append((neighbor, depth + 1))
-        for neighbor in rev_adj.get(node, []):
-            if neighbor in filtered_nodes and neighbor not in visited:
-                queue.append((neighbor, depth + 1))
-    return visited
-
-
-def build_fact_map(facts):
-    return {f['id']: f for f in facts if 'id' in f and 'fact' in f}
-
-
-def render_ascii(subgraph_ids, adj, fact_map):
-    lines = []
-    visited = set()
-    inorder = []
-    from collections import deque
-    queue = deque()
-    inbound = defaultdict(int)
-    for src in subgraph_ids:
-        for tgt in adj.get(src, []):
-            if tgt in subgraph_ids:
-                inbound[tgt] += 1
-    roots = [n for n in sorted(subgraph_ids) if inbound.get(n, 0) == 0]
-    if not roots:
-        roots = sorted(subgraph_ids)
-    for root in roots:
-        queue.append((root, 0, None))
-    while queue:
-        node, depth, parent_label = queue.popleft()
-        if node in visited:
-            continue
-        visited.add(node)
-        fact = fact_map.get(node, {})
-        label = fact.get('fact', str(node))[:80]
-        category = fact.get('category', 'fact')
-        domain = fact.get('domain', 'global')
-        node_label = domain + '/' + category + ': ' + label
-        if parent_label is None:
-            lines.append(f"{'  ' * depth}┌─ {node_label}")
-        else:
-            lines.append(f"{'  ' * depth}├─ {node_label}")
-        children = [c for c in adj.get(node, []) if c in subgraph_ids]
-        for i, child in enumerate(children):
-            queue.append((child, depth + 1, node))
-    if len(visited) < len(subgraph_ids):
-        lines.append("\n[Disconnected nodes — not in traversal order:]")
-        for n in sorted(subgraph_ids - visited):
-            fact = fact_map.get(n, {})
-            label = fact.get('fact', n)[:60]
-            lines.append(f"  {n} — {label}")
-    return "\n".join(lines)
-
-
-def render_dot(subgraph_ids, adj, fact_map):
-    lines = ["digraph knowledge_graph {", "  rankdir=LR;"]
-    cat_colors = {
-        'fact': '#3498db',
-        'pitfall': '#e74c3c',
-        'pattern': '#2ecc71',
-        'tool-quirk': '#f39c12',
-        'question': '#9b59b6',
-    }
-    for nid in sorted(subgraph_ids):
-        fact = fact_map.get(nid, {})
-        category = fact.get('category', 'fact')
-        domain = fact.get('domain', 'global')
-        label = fact.get('fact', nid).replace('"', '\\"')[:80]
-        fillcolor = cat_colors.get(category, '#666666')
-        lines.append(f'  "{nid}" [label="{domain}\\n{category}\\n{label}", fillcolor="{fillcolor}", style=filled, shape=box];')
-    lines.append("")
-    for src in sorted(subgraph_ids):
-        for tgt in adj.get(src, []):
-            if tgt in subgraph_ids:
-                lines.append(f'  "{src}" -> "{tgt}";')
-    lines.append("}")
-    return "\n".join(lines)
-
-
-def main():
-    parser = argparse.ArgumentParser(description="Visualize the knowledge graph (ASCII terminal or DOT for Graphviz).")
-    parser.add_argument("--index", type=Path, default=Path(__file__).parent.parent / "knowledge" / "index.json",
-        help="Path to knowledge/index.json")
-    parser.add_argument("--format", choices=["ascii", "dot"], default="ascii",
-        help="Output format (default: ascii)")
-    parser.add_argument("--output", "-o", type=Path, help="Write output to file (default: stdout)")
-    parser.add_argument("--seed", help="Starting fact ID (comma-sep). Omit to render full graph.")
-    parser.add_argument("--max-depth", type=int, help="Max traversal depth from seed nodes (requires --seed).")
-    parser.add_argument("--filter-domain", help="Only include facts from this domain.")
-    parser.add_argument("--filter-category", help="Only include facts of this category.")
-    args = parser.parse_args()
-
-    index = load_index(args.index)
-    facts = index.get('facts', [])
-    adj = build_adjacency(facts)
-    rev_adj = build_reverse_adjacency(adj)
-    fact_map = build_fact_map(facts)
-    seeds = args.seed.split(',') if args.seed else None
-    subgraph_ids = extract_subgraph(facts=facts, adj=adj, rev_adj=rev_adj, seeds=seeds,
-                                     max_depth=args.max_depth,
-                                     filter_domain=args.filter_domain,
-                                     filter_category=args.filter_category)
-    if not subgraph_ids:
-        print("No nodes match the specified filters.", file=sys.stderr)
-        sys.exit(1)
-    if args.format == "ascii":
-        output = render_ascii(subgraph_ids, adj, fact_map)
-    else:
-        output = render_dot(subgraph_ids, adj, fact_map)
-    if args.output:
-        args.output.write_text(output)
-        print(f"Written: {args.output}", file=sys.stderr)
-    else:
-        print(output)
-
-
-if __name__ == "__main__":
-    main()

scripts/pr_complexity_scorer.py

@@ -0,0 +1,351 @@
+#!/usr/bin/env python3
+"""
+PR Complexity Scorer - Estimate review effort for PRs.
+"""
+
+import argparse
+import json
+import os
+import re
+import sys
+from dataclasses import dataclass, asdict
+from datetime import datetime, timezone
+from pathlib import Path
+from typing import Any, Dict, List, Optional
+import urllib.request
+import urllib.error
+
+GITEA_BASE = "https://forge.alexanderwhitestone.com/api/v1"
+
+DEPENDENCY_FILES = {
+    "requirements.txt", "pyproject.toml", "setup.py", "setup.cfg",
+    "Pipfile", "poetry.lock", "package.json", "yarn.lock", "Gemfile",
+    "go.mod", "Cargo.toml", "pom.xml", "build.gradle"
+}
+
+TEST_PATTERNS = [
+    r"tests?/.*\.py$", r".*_test\.py$", r"test_.*\.py$",
+    r"spec/.*\.rb$", r".*_spec\.rb$",
+    r"__tests__/", r".*\.test\.(js|ts|jsx|tsx)$"
+]
+
+WEIGHT_FILES = 0.25
+WEIGHT_LINES = 0.25
+WEIGHT_DEPS = 0.30
+WEIGHT_TEST_COV = 0.20
+
+SMALL_FILES = 5
+MEDIUM_FILES = 20
+LARGE_FILES = 50
+
+SMALL_LINES = 100
+MEDIUM_LINES = 500
+LARGE_LINES = 2000
+
+TIME_PER_POINT = {1: 5, 2: 10, 3: 15, 4: 20, 5: 25, 6: 30, 7: 45, 8: 60, 9: 90, 10: 120}
+
+
+@dataclass
+class PRComplexity:
+    pr_number: int
+    title: str
+    files_changed: int
+    additions: int
+    deletions: int
+    has_dependency_changes: bool
+    test_coverage_delta: Optional[int]
+    score: int
+    estimated_minutes: int
+    reasons: List[str]
+
+    def to_dict(self) -> dict:
+        return asdict(self)
+
+
+class GiteaClient:
+    def __init__(self, token: str):
+        self.token = token
+        self.base_url = GITEA_BASE.rstrip("/")
+
+    def _request(self, path: str, params: Dict = None) -> Any:
+        url = f"{self.base_url}{path}"
+        if params:
+            qs = "&".join(f"{k}={v}" for k, v in params.items() if v is not None)
+            url += f"?{qs}"
+
+        req = urllib.request.Request(url)
+        req.add_header("Authorization", f"token {self.token}")
+        req.add_header("Content-Type", "application/json")
+
+        try:
+            with urllib.request.urlopen(req, timeout=30) as resp:
+                return json.loads(resp.read().decode())
+        except urllib.error.HTTPError as e:
+            print(f"API error {e.code}: {e.read().decode()[:200]}", file=sys.stderr)
+            return None
+        except urllib.error.URLError as e:
+            print(f"Network error: {e}", file=sys.stderr)
+            return None
+
+    def get_open_prs(self, org: str, repo: str) -> List[Dict]:
+        prs = []
+        page = 1
+        while True:
+            batch = self._request(f"/repos/{org}/{repo}/pulls", {"limit": 50, "page": page, "state": "open"})
+            if not batch:
+                break
+            prs.extend(batch)
+            if len(batch) < 50:
+                break
+            page += 1
+        return prs
+
+    def get_pr_files(self, org: str, repo: str, pr_number: int) -> List[Dict]:
+        files = []
+        page = 1
+        while True:
+            batch = self._request(
+                f"/repos/{org}/{repo}/pulls/{pr_number}/files",
+                {"limit": 100, "page": page}
+            )
+            if not batch:
+                break
+            files.extend(batch)
+            if len(batch) < 100:
+                break
+            page += 1
+        return files
+
+    def post_comment(self, org: str, repo: str, pr_number: int, body: str) -> bool:
+        data = json.dumps({"body": body}).encode("utf-8")
+        req = urllib.request.Request(
+            f"{self.base_url}/repos/{org}/{repo}/issues/{pr_number}/comments",
+            data=data,
+            method="POST",
+            headers={"Authorization": f"token {self.token}", "Content-Type": "application/json"}
+        )
+        try:
+            with urllib.request.urlopen(req, timeout=30) as resp:
+                return resp.status in (200, 201)
+        except urllib.error.HTTPError:
+            return False
+
+
+def is_dependency_file(filename: str) -> bool:
+    return any(filename.endswith(dep) for dep in DEPENDENCY_FILES)
+
+
+def is_test_file(filename: str) -> bool:
+    return any(re.search(pattern, filename) for pattern in TEST_PATTERNS)
+
+
+def score_pr(
+    files_changed: int,
+    additions: int,
+    deletions: int,
+    has_dependency_changes: bool,
+    test_coverage_delta: Optional[int] = None
+) -> tuple[int, int, List[str]]:
+    score = 1.0
+    reasons = []
+
+    # Files changed
+    if files_changed <= SMALL_FILES:
+        fscore = 1.0
+        reasons.append("small number of files changed")
+    elif files_changed <= MEDIUM_FILES:
+        fscore = 2.0
+        reasons.append("moderate number of files changed")
+    elif files_changed <= LARGE_FILES:
+        fscore = 2.5
+        reasons.append("large number of files changed")
+    else:
+        fscore = 3.0
+        reasons.append("very large PR spanning many files")
+
+    # Lines changed
+    total_lines = additions + deletions
+    if total_lines <= SMALL_LINES:
+        lscore = 1.0
+        reasons.append("small change size")
+    elif total_lines <= MEDIUM_LINES:
+        lscore = 2.0
+        reasons.append("moderate change size")
+    elif total_lines <= LARGE_LINES:
+        lscore = 3.0
+        reasons.append("large change size")
+    else:
+        lscore = 4.0
+        reasons.append("very large change")
+
+    # Dependency changes
+    if has_dependency_changes:
+        dscore = 2.5
+        reasons.append("dependency changes (architectural impact)")
+    else:
+        dscore = 0.0
+
+    # Test coverage delta
+    tscore = 0.0
+    if test_coverage_delta is not None:
+        if test_coverage_delta > 0:
+            reasons.append(f"test additions (+{test_coverage_delta} test files)")
+            tscore = -min(2.0, test_coverage_delta / 2.0)
+        elif test_coverage_delta < 0:
+            reasons.append(f"test removals ({abs(test_coverage_delta)} test files)")
+            tscore = min(2.0, abs(test_coverage_delta) * 0.5)
+    else:
+        reasons.append("test coverage change not assessed")
+
+    # Weighted sum, scaled by 3 to use full 1-10 range
+    bonus = (fscore * WEIGHT_FILES) + (lscore * WEIGHT_LINES) + (dscore * WEIGHT_DEPS) + (tscore * WEIGHT_TEST_COV)
+    scaled_bonus = bonus * 3.0
+    score = 1.0 + scaled_bonus
+
+    final_score = max(1, min(10, int(round(score))))
+    est_minutes = TIME_PER_POINT.get(final_score, 30)
+
+    return final_score, est_minutes, reasons
+
+
+def analyze_pr(client: GiteaClient, org: str, repo: str, pr_data: Dict) -> PRComplexity:
+    pr_num = pr_data["number"]
+    title = pr_data.get("title", "")
+    files = client.get_pr_files(org, repo, pr_num)
+
+    additions = sum(f.get("additions", 0) for f in files)
+    deletions = sum(f.get("deletions", 0) for f in files)
+    filenames = [f.get("filename", "") for f in files]
+
+    has_deps = any(is_dependency_file(f) for f in filenames)
+
+    test_added = sum(1 for f in files if f.get("status") == "added" and is_test_file(f.get("filename", "")))
+    test_removed = sum(1 for f in files if f.get("status") == "removed" and is_test_file(f.get("filename", "")))
+    test_delta = test_added - test_removed if (test_added or test_removed) else None
+
+    score, est_min, reasons = score_pr(
+        files_changed=len(files),
+        additions=additions,
+        deletions=deletions,
+        has_dependency_changes=has_deps,
+        test_coverage_delta=test_delta
+    )
+
+    return PRComplexity(
+        pr_number=pr_num,
+        title=title,
+        files_changed=len(files),
+        additions=additions,
+        deletions=deletions,
+        has_dependency_changes=has_deps,
+        test_coverage_delta=test_delta,
+        score=score,
+        estimated_minutes=est_min,
+        reasons=reasons
+    )
+
+
+def build_comment(complexity: PRComplexity) -> str:
+    change_desc = f"{complexity.files_changed} files, +{complexity.additions}/-{complexity.deletions} lines"
+    deps_note = "\n- :warning: Dependency changes detected — architectural review recommended" if complexity.has_dependency_changes else ""
+    test_note = ""
+    if complexity.test_coverage_delta is not None:
+        if complexity.test_coverage_delta > 0:
+            test_note = f"\n- :+1: {complexity.test_coverage_delta} test file(s) added"
+        elif complexity.test_coverage_delta < 0:
+            test_note = f"\n- :warning: {abs(complexity.test_coverage_delta)} test file(s) removed"
+
+    comment = f"## 📊 PR Complexity Analysis\n\n"
+    comment += f"**PR #{complexity.pr_number}: {complexity.title}**\n\n"
+    comment += f"| Metric | Value |\n|--------|-------|\n"
+    comment += f"| Changes | {change_desc} |\n"
+    comment += f"| Complexity Score | **{complexity.score}/10** |\n"
+    comment += f"| Estimated Review Time | ~{complexity.estimated_minutes} minutes |\n\n"
+    comment += f"### Scoring rationale:"
+    for r in complexity.reasons:
+        comment += f"\n- {r}"
+    if deps_note:
+        comment += deps_note
+    if test_note:
+        comment += test_note
+    comment += f"\n\n---\n"
+    comment += f"*Generated by PR Complexity Scorer — [issue #135](https://forge.alexanderwhitestone.com/Timmy_Foundation/compounding-intelligence/issues/135)*"
+    return comment
+
+
+def main():
+    parser = argparse.ArgumentParser(description="PR Complexity Scorer")
+    parser.add_argument("--org", default="Timmy_Foundation")
+    parser.add_argument("--repo", default="compounding-intelligence")
+    parser.add_argument("--token", default=os.environ.get("GITEA_TOKEN") or os.path.expanduser("~/.config/gitea/token"))
+    parser.add_argument("--dry-run", action="store_true")
+    parser.add_argument("--apply", action="store_true")
+    parser.add_argument("--output", default="metrics/pr_complexity.json")
+    args = parser.parse_args()
+
+    token_path = args.token
+    if os.path.exists(token_path):
+        with open(token_path) as f:
+            token = f.read().strip()
+    else:
+        token = args.token
+
+    if not token:
+        print("ERROR: No Gitea token provided", file=sys.stderr)
+        sys.exit(1)
+
+    client = GiteaClient(token)
+
+    print(f"Fetching open PRs for {args.org}/{args.repo}...")
+    prs = client.get_open_prs(args.org, args.repo)
+    if not prs:
+        print("No open PRs found.")
+        sys.exit(0)
+
+    print(f"Found {len(prs)} open PR(s). Analyzing...")
+
+    results = []
+    Path(args.output).parent.mkdir(parents=True, exist_ok=True)
+
+    for pr in prs:
+        pr_num = pr["number"]
+        title = pr.get("title", "")
+        print(f"  Analyzing PR #{pr_num}: {title[:60]}")
+
+        try:
+            complexity = analyze_pr(client, args.org, args.repo, pr)
+            results.append(complexity.to_dict())
+
+            comment = build_comment(complexity)
+
+            if args.dry_run:
+                print(f"    → Score: {complexity.score}/10, Est: {complexity.estimated_minutes}min [DRY-RUN]")
+            elif args.apply:
+                success = client.post_comment(args.org, args.repo, pr_num, comment)
+                status = "[commented]" if success else "[FAILED]"
+                print(f"    → Score: {complexity.score}/10, Est: {complexity.estimated_minutes}min {status}")
+            else:
+                print(f"    → Score: {complexity.score}/10, Est: {complexity.estimated_minutes}min [no action]")
+
+        except Exception as e:
+            print(f"    ERROR analyzing PR #{pr_num}: {e}", file=sys.stderr)
+
+    with open(args.output, "w") as f:
+        json.dump({
+            "org": args.org,
+            "repo": args.repo,
+            "timestamp": datetime.now(timezone.utc).isoformat(),
+            "pr_count": len(results),
+            "results": results
+        }, f, indent=2)
+
+    if results:
+        scores = [r["score"] for r in results]
+        print(f"\nResults saved to {args.output}")
+        print(f"Summary: {len(results)} PRs, scores range {min(scores):.0f}-{max(scores):.0f}")
+    else:
+        print("\nNo results to save.")
+
+
+if __name__ == "__main__":
+    main()

scripts/test_graph_visualizer.py

@@ -1,105 +0,0 @@
-#!/usr/bin/env python3
-"""
-Tests for graph_visualizer.py — smoke test + subgraph logic.
-Run: python3 scripts/test_graph_visualizer.py
-"""
-
-import json, sys, tempfile
-from pathlib import Path
-sys.path.insert(0, str(Path(__file__).resolve().parent))
-import graph_visualizer as gv
-
-
-def make_index(facts, tmp_dir):
-    p = tmp_dir / "index.json"
-    p.write_text(json.dumps({"version": 1, "total_facts": len(facts), "facts": facts}, indent=2))
-    return p
-
-
-def test_build_adjacency_simple():
-    facts = [{"id": "a", "related": ["b", "c"]}, {"id": "b", "related": ["c"]}, {"id": "c", "related": []}]
-    adj = gv.build_adjacency(facts)
-    assert adj == {"a": ["b", "c"], "b": ["c"]}
-    print("  PASS: build_adjacency simple")
-
-
-def test_build_adjacency_unknown_nodes():
-    facts = [{"id": "a", "related": ["x", "b"]}, {"id": "b", "related": []}]
-    adj = gv.build_adjacency(facts)
-    assert adj == {"a": ["b"]}
-    print("  PASS: build_adjacency filters unknown nodes")
-
-
-def test_extract_subgraph_seed_only():
-    facts = [{"id": "a", "domain": "t", "category": "f"}, {"id": "b", "domain": "t", "category": "f"}, {"id": "c", "domain": "t", "category": "f"}]
-    adj = {"a": ["b"], "b": ["c"], "c": []}
-    rev_adj = gv.build_reverse_adjacency(adj)
-    sub = gv.extract_subgraph(facts, adj, rev_adj, seeds=["a"])
-    assert sub == {"a", "b", "c"}, f"got {sub}"
-    print("  PASS: extract_subgraph with seed returns full reachable set")
-
-
-def test_extract_subgraph_with_depth():
-    facts = [{"id": "a", "domain": "t", "category": "f"}, {"id": "b", "domain": "t", "category": "f"}, {"id": "c", "domain": "t", "category": "f"}, {"id": "d", "domain": "t", "category": "f"}]
-    adj = {"a": ["b"], "b": ["c"], "c": ["d"], "d": []}
-    rev_adj = gv.build_reverse_adjacency(adj)
-    sub = gv.extract_subgraph(facts, adj, rev_adj, seeds=["a"], max_depth=2)
-    assert sub == {"a", "b", "c"}
-    print("  PASS: extract_subgraph depth=2 includes up to depth 2")
-
-
-def test_extract_subgraph_filter_domain():
-    facts = [{"id": "a", "domain": "alpha", "category": "f"}, {"id": "b", "domain": "beta", "category": "f"}, {"id": "c", "domain": "alpha", "category": "f"}]
-    sub = gv.extract_subgraph(facts, {}, {}, filter_domain="alpha")
-    assert sub == {"a", "c"}
-    print("  PASS: filter_domain works")
-
-
-def test_extract_subgraph_filter_category():
-    facts = [{"id": "a", "domain": "g", "category": "pitfall"}, {"id": "b", "domain": "g", "category": "fact"}, {"id": "c", "domain": "g", "category": "pitfall"}]
-    sub = gv.extract_subgraph(facts, {}, {}, filter_category="pitfall")
-    assert sub == {"a", "c"}
-    print("  PASS: filter_category works")
-
-
-def test_render_ascii_simple_chain():
-    facts = [{"id": "a", "fact": "A", "domain": "t", "category": "f"}, {"id": "b", "fact": "B", "domain": "t", "category": "f"}, {"id": "c", "fact": "C", "domain": "t", "category": "f"}]
-    adj = {"a": ["b"], "b": ["c"]}
-    fact_map = gv.build_fact_map(facts)
-    out = gv.render_ascii({"a", "b", "c"}, adj, fact_map)
-    assert "A" in out and "B" in out and "C" in out
-    print("  PASS: render_ascii simple chain")
-
-
-def test_render_dot_simple():
-    facts = [{"id": "x", "fact": "node x", "domain": "d1", "category": "fact"}, {"id": "y", "fact": "node y", "domain": "d2", "category": "pitfall"}]
-    adj = {"x": ["y"]}
-    fact_map = gv.build_fact_map(facts)
-    out = gv.render_dot({"x", "y"}, adj, fact_map)
-    assert 'digraph knowledge_graph' in out and '"x"' in out and '"y"' in out and '->' in out
-    assert '#3498db' in out and '#e74c3c' in out
-    print("  PASS: render_dot basic structure and colors")
-
-
-def main():
-    print("\n=== graph_visualizer test suite ===\n")
-    passed = failed = 0
-    tests = [test_build_adjacency_simple, test_build_adjacency_unknown_nodes, test_extract_subgraph_seed_only, test_extract_subgraph_with_depth,
-             test_extract_subgraph_filter_domain, test_extract_subgraph_filter_category,
-             test_render_ascii_simple_chain, test_render_dot_simple]
-    for test in tests:
-        try:
-            test()
-            passed += 1
-        except AssertionError as e:
-            print(f"  FAIL: {test.__name__} — {e}")
-            failed += 1
-        except Exception as e:
-            print(f"  ERROR: {test.__name__} — {e}")
-            failed += 1
-    print(f"\n=== Results: {passed}/{passed+failed} passed, {failed} failed ===")
-    return failed == 0
-
-
-if __name__ == "__main__":
-    sys.exit(0 if main() else 1)

scripts/test_pr_complexity_scorer.py

@@ -0,0 +1,170 @@
+#!/usr/bin/env python3
+"""
+Tests for PR Complexity Scorer — unit tests for the scoring logic.
+"""
+
+import sys
+from pathlib import Path
+
+sys.path.insert(0, str(Path(__file__).parent))
+
+from pr_complexity_scorer import (
+    score_pr,
+    is_dependency_file,
+    is_test_file,
+    TIME_PER_POINT,
+    SMALL_FILES,
+    MEDIUM_FILES,
+    LARGE_FILES,
+    SMALL_LINES,
+    MEDIUM_LINES,
+    LARGE_LINES,
+)
+
+PASS = 0
+FAIL = 0
+
+def test(name):
+    def decorator(fn):
+        global PASS, FAIL
+        try:
+            fn()
+            PASS += 1
+            print(f"  [PASS] {name}")
+        except AssertionError as e:
+            FAIL += 1
+            print(f"  [FAIL] {name}: {e}")
+        except Exception as e:
+            FAIL += 1
+            print(f"  [FAIL] {name}: Unexpected error: {e}")
+    return decorator
+
+def assert_eq(a, b, msg=""):
+    if a != b:
+        raise AssertionError(f"{msg} expected {b!r}, got {a!r}")
+
+def assert_true(v, msg=""):
+    if not v:
+        raise AssertionError(msg or "Expected True")
+
+def assert_false(v, msg=""):
+    if v:
+        raise AssertionError(msg or "Expected False")
+
+
+print("=== PR Complexity Scorer Tests ===\n")
+
+print("-- File Classification --")
+
+@test("dependency file detection — requirements.txt")
+def _():
+    assert_true(is_dependency_file("requirements.txt"))
+    assert_true(is_dependency_file("src/requirements.txt"))
+    assert_false(is_dependency_file("requirements_test.txt"))
+
+@test("dependency file detection — pyproject.toml")
+def _():
+    assert_true(is_dependency_file("pyproject.toml"))
+    assert_false(is_dependency_file("myproject.py"))
+
+@test("test file detection — pytest style")
+def _():
+    assert_true(is_test_file("tests/test_api.py"))
+    assert_true(is_test_file("test_module.py"))
+    assert_true(is_test_file("src/module_test.py"))
+
+@test("test file detection — other frameworks")
+def _():
+    assert_true(is_test_file("spec/feature_spec.rb"))
+    assert_true(is_test_file("__tests__/component.test.js"))
+    assert_false(is_test_file("testfixtures/helper.py"))
+
+
+print("\n-- Scoring Logic --")
+
+@test("small PR gets low score (1-3)")
+def _():
+    score, minutes, _ = score_pr(
+        files_changed=3,
+        additions=50,
+        deletions=10,
+        has_dependency_changes=False,
+        test_coverage_delta=None
+    )
+    assert_true(1 <= score <= 3, f"Score should be low, got {score}")
+    assert_true(minutes < 20)
+
+@test("medium PR gets medium score (4-6)")
+def _():
+    score, minutes, _ = score_pr(
+        files_changed=15,
+        additions=400,
+        deletions=100,
+        has_dependency_changes=False,
+        test_coverage_delta=None
+    )
+    assert_true(4 <= score <= 6, f"Score should be medium, got {score}")
+    assert_true(20 <= minutes <= 45)
+
+@test("large PR gets high score (7-9)")
+def _():
+    score, minutes, _ = score_pr(
+        files_changed=60,
+        additions=3000,
+        deletions=1500,
+        has_dependency_changes=True,
+        test_coverage_delta=None
+    )
+    assert_true(7 <= score <= 9, f"Score should be high, got {score}")
+    assert_true(minutes >= 45)
+
+@test("dependency changes boost score")
+def _():
+    base_score, _, _ = score_pr(
+        files_changed=10, additions=200, deletions=50,
+        has_dependency_changes=False, test_coverage_delta=None
+    )
+    dep_score, _, _ = score_pr(
+        files_changed=10, additions=200, deletions=50,
+        has_dependency_changes=True, test_coverage_delta=None
+    )
+    assert_true(dep_score > base_score, f"Deps: {base_score} -> {dep_score}")
+
+@test("adding tests lowers complexity")
+def _():
+    base_score, _, _ = score_pr(
+        files_changed=8, additions=150, deletions=20,
+        has_dependency_changes=False, test_coverage_delta=None
+    )
+    better_score, _, _ = score_pr(
+        files_changed=8, additions=180, deletions=20,
+        has_dependency_changes=False, test_coverage_delta=3
+    )
+    assert_true(better_score < base_score, f"Tests: {base_score} -> {better_score}")
+
+@test("removing tests increases complexity")
+def _():
+    base_score, _, _ = score_pr(
+        files_changed=8, additions=150, deletions=20,
+        has_dependency_changes=False, test_coverage_delta=None
+    )
+    worse_score, _, _ = score_pr(
+        files_changed=8, additions=150, deletions=20,
+        has_dependency_changes=False, test_coverage_delta=-2
+    )
+    assert_true(worse_score > base_score, f"Remove tests: {base_score} -> {worse_score}")
+
+@test("score bounded 1-10")
+def _():
+    for files, adds, dels in [(1, 10, 5), (100, 10000, 5000)]:
+        score, _, _ = score_pr(files, adds, dels, False, None)
+        assert_true(1 <= score <= 10, f"Score {score} out of range")
+
+@test("estimated minutes exist for all scores")
+def _():
+    for s in range(1, 11):
+        assert_true(s in TIME_PER_POINT, f"Missing time for score {s}")
+
+
+print(f"\n=== Results: {PASS} passed, {FAIL} failed ===")
+sys.exit(0 if FAIL == 0 else 1)

scripts/vulnerability_scanner.py

@@ -0,0 +1,470 @@
+#!/usr/bin/env python3
+"""
+vulnerability_scanner.py — Check Python dependencies against CVE databases (Issue #108)
+
+Scans requirements.txt (or any pip-compatible dependency file) and queries
+the Open Source Vulnerability (OSV) database for known security issues.
+
+OSV API: https://api.osv.dev/v1/query  (free, no auth, PyPI ecosystem supported)
+
+Output:
+  - Human-readable summary on stdout
+  - JSON report with full vulnerability details
+  - Exit code: 0 if no vulnerabilities found, 1 if critical/high found, 2 otherwise
+
+Usage:
+  python3 scripts/vulnerability_scanner.py
+  python3 scripts/vulnerability_scanner.py --deps requirements.txt --output json
+  python3 scripts/vulnerability_scanner.py --min-severity high
+  python3 scripts/vulnerability_scanner.py --deps requirements.txt --report-format markdown
+"""
+
+import argparse
+import json
+import os
+import re
+import sys
+import urllib.request
+import urllib.error
+from dataclasses import dataclass
+from pathlib import Path
+from typing import Dict, List, Optional, Tuple
+
+# --- Configuration ---
+
+OSV_API_URL = "https://api.osv.dev/v1/query"
+DEFAULT_REQUIREMENTS_PATH = "requirements.txt"
+SEVERITY_LEVELS = ["critical", "high", "medium", "low", "unknown"]
+
+# Map OSV severities to our buckets
+CVSS_SEVERITY_MAP = {
+    "CRITICAL": "critical",
+    "HIGH": "high",
+    "MEDIUM": "medium",
+    "LOW": "low",
+    "NONE": "none",
+}
+
+# --- Data Structures ---
+
+
+@dataclass
+class Vulnerability:
+    """A single vulnerability finding."""
+    package: str
+    version: str
+    vuln_id: str
+    severity: str
+    cvss_score: Optional[float]
+    summary: str
+    details_url: str
+    fixed_versions: List[str]
+
+
+@dataclass
+class ScanResult:
+    """Results from a vulnerability scan."""
+    scanned_packages: int
+    vulnerabilities: List[Vulnerability]
+    errors: List[Tuple[str, str]]  # (package, error_message)
+
+
+# --- Requirement Parsing ---
+
+
+def parse_requirements_file(path: str) -> Dict[str, str]:
+    """
+    Parse a requirements.txt file into {package_name: version_spec}.
+
+    Handles:
+      - pkg==1.2.3
+      - pkg>=1.0.0
+      - pkg[extra]==1.2.3
+      - -e/--editable entries (skipped)
+      - -r inclusions (recursive, limited depth)
+      - comments and blank lines
+    """
+    packages = {}
+    processed_includes = set()
+
+    def parse_line(line: str, filename: str, depth: int = 0) -> None:
+        if depth > 3:
+            print(f"WARNING: Max include depth exceeded in {filename}", file=sys.stderr)
+            return
+
+        line = line.strip()
+        if not line or line.startswith('#'):
+            return
+
+        # Handle -r or --requirement includes
+        if line.startswith('-r ') or line.startswith('--requirement '):
+            if depth >= 3:
+                return
+            include_path = line.split(None, 1)[1].strip()
+            # Resolve relative to current file's directory
+            base_dir = os.path.dirname(os.path.abspath(filename))
+            full_path = os.path.join(base_dir, include_path)
+            if full_path not in processed_includes:
+                processed_includes.add(full_path)
+                try:
+                    with open(full_path, 'r', encoding='utf-8') as f:
+                        for incl_line in f:
+                            parse_line(incl_line, full_path, depth + 1)
+                except FileNotFoundError:
+                    print(f"WARNING: Could not read included file: {full_path}", file=sys.stderr)
+            return
+
+        # Skip editable installs and other flags
+        if line.startswith('-e ') or line.startswith('--editable ') or line.startswith('-'):
+            return
+
+        # Extract package name and version spec
+        # Handles: pkg==1.2.3, pkg>=1.0, pkg[extra]==1.2.3, pkg ~= 1.0
+        # Strip inline comment first
+        line = line.split('#', 1)[0].strip()
+        if not line:
+            return
+
+        # Skip editable installs and other option lines
+        if line.startswith('-e ') or line.startswith('--editable ') or (line.startswith('-') and not re.match(r'^[a-zA-Z0-9]', line[1:])):
+            return
+
+        # Extract package name: leading identifier before any extras or version spec
+        pkg_match = re.match(r'^([a-zA-Z0-9]([a-zA-Z0-9._-]*[a-zA-Z0-9])?)', line)
+        if not pkg_match:
+            return
+        pkg_name = pkg_match.group(1).lower()
+
+        # Strip extras [extra] from remainder
+        remainder = line[pkg_match.end():]
+        remainder = re.sub(r'\[.*?\]', '', remainder)
+
+        # Extract version comparison
+        version = ""
+        ver_match = re.search(r'(===|==|~=|>=|<=|!=)\s*([^\s;]+)', remainder)
+        if ver_match:
+            version = ver_match.group(1) + ver_match.group(2)
+
+        packages[pkg_name] = version
+
+    # Read and parse the file
+    try:
+        with open(path, 'r', encoding='utf-8') as f:
+            for line in f:
+                parse_line(line, path, 0)
+    except FileNotFoundError:
+        print(f"ERROR: Requirements file not found: {path}", file=sys.stderr)
+        sys.exit(1)
+
+    return packages
+
+
+# --- OSV API Queries ---
+
+
+def query_osv(package: str, version: str) -> List[dict]:
+    """
+    Query the OSV API for vulnerabilities affecting a specific package version.
+
+    Returns list of vulnerability dicts (raw API response) or empty list on error.
+    """
+    # Normalize version spec for OSV query
+    # OSV expects a specific version, not a range. We query for the exact version
+    # if available, otherwise we query without version to get all vulns for the package
+    # and let the caller filter.
+    query_version = version if re.match(r'^[0-9]', version) else None
+
+    payload = {
+        "package": {
+            "name": package,
+            "ecosystem": "PyPI"
+        }
+    }
+    if query_version:
+        payload["version"] = query_version
+
+    data = json.dumps(payload).encode('utf-8')
+    req = urllib.request.Request(
+        OSV_API_URL,
+        data=data,
+        headers={'Content-Type': 'application/json'},
+        method='POST'
+    )
+
+    try:
+        with urllib.request.urlopen(req, timeout=15) as response:
+            result = json.loads(response.read().decode('utf-8'))
+            return result.get('vulns', []) + result.get('vulnerabilities', [])
+    except urllib.error.HTTPError as e:
+        if e.code == 404:
+            return []  # No vulnerabilities found
+        print(f"WARNING: OSV query failed for {package}: HTTP {e.code}", file=sys.stderr)
+    except (urllib.error.URLError, json.JSONDecodeError, TimeoutError) as e:
+        print(f"WARNING: OSV query failed for {package}: {e}", file=sys.stderr)
+
+    return []
+
+
+def parse_osv_vuln(raw_vulns: List[dict], package: str, version_spec: str) -> List[Vulnerability]:
+    """
+    Parse raw OSV API responses into Vulnerability objects.
+    """
+    vulns = []
+    for v in raw_vulns:
+        vuln_id = v.get('id', 'UNKNOWN')
+        summary = v.get('summary', 'No summary provided.')
+
+        # Severity from CVSS or ecosystem-specific
+        severity = "unknown"
+        cvss_score = None
+        if 'severity' in v:
+            for sev_info in v['severity']:
+                if sev_info.get('type') == 'CVSS_V3':
+                    score = sev_info.get('score', '')
+                    if isinstance(score, dict):
+                        cvss_score = score.get('baseScore')
+                        sev_str = score.get('baseSeverity', '').upper()
+                        severity = CVSS_SEVERITY_MAP.get(sev_str, 'unknown')
+                    break
+                elif sev_info.get('type') == 'CVSS_V2':
+                    # Fallback
+                    score = sev_info.get('score', '')
+                    if isinstance(score, dict):
+                        cvss_score = score.get('baseScore')
+                        sev_str = sev_info.get('type', '').upper()
+                        severity = "unknown"
+
+        # Affected packages/ranges
+        affected = v.get('affected', [])
+        fixed_versions = []
+        for aff in affected:
+            for r in aff.get('ranges', []):
+                for event in r.get('events', []):
+                    if event.get('introduced'):
+                        # We have the version, fixed would be in 'fixed' events
+                        pass
+                    if event.get('fixed'):
+                        fixed_versions.append(event['fixed'])
+
+        # Build details URL
+        details_url = f"https://osv.dev/vulnerability/{vuln_id}"
+
+        vuln = Vulnerability(
+            package=package,
+            version=version_spec,
+            vuln_id=vuln_id,
+            severity=severity,
+            cvss_score=cvss_score,
+            summary=summary,
+            details_url=details_url,
+            fixed_versions=list(set(fixed_versions))
+        )
+        vulns.append(vuln)
+
+    return vulns
+
+
+# --- Filtering & Reporting ---
+
+
+def filter_by_severity(vulns: List[Vulnerability], min_severity: str) -> List[Vulnerability]:
+    """Filter vulnerabilities to include only those at or above the given severity."""
+    if min_severity.lower() not in SEVERITY_LEVELS:
+        return vulns  # No filtering if invalid
+
+    min_idx = SEVERITY_LEVELS.index(min_severity.lower())
+    filtered = []
+    for v in vulns:
+        sev_idx = SEVERITY_LEVELS.index(v.severity.lower())
+        if sev_idx <= min_idx:  # lower index = more severe
+            filtered.append(v)
+    return filtered
+
+
+def generate_text_report(result: ScanResult, packages: Dict[str, str]) -> str:
+    """Generate human-readable text report."""
+    lines = []
+    lines.append("=" * 60)
+    lines.append("Vulnerability Scan Report")
+    lines.append("=" * 60)
+    lines.append(f"Packages scanned: {result.scanned_packages}")
+    lines.append(f"Vulnerabilities found: {len(result.vulnerabilities)}")
+
+    if result.errors:
+        lines.append(f"Errors: {len(result.errors)}")
+
+    # Group by severity
+    by_severity: Dict[str, List[Vulnerability]] = {}
+    for v in result.vulnerabilities:
+        by_severity.setdefault(v.severity.upper(), []).append(v)
+
+    for sev in ["CRITICAL", "HIGH", "MEDIUM", "LOW", "UNKNOWN"]:
+        vuln_list = by_severity.get(sev, [])
+        if vuln_list:
+            lines.append(f"\n{sev}: {len(vuln_list)}")
+            for v in vuln_list:
+                lines.append(f"  [{v.package} {packages.get(v.package, '')}] {v.vuln_id}")
+                lines.append(f"    {v.summary[:80]}")
+                if v.cvss_score:
+                    lines.append(f"    CVSS: {v.cvss_score}")
+                if v.fixed_versions:
+                    lines.append(f"    Fixed in: {', '.join(v.fixed_versions[:3])}")
+                lines.append(f"    {v.details_url}")
+
+    if result.errors:
+        lines.append("\nERRORS:")
+        for pkg, err in result.errors[:10]:
+            lines.append(f"  {pkg}: {err}")
+
+    lines.append("\n" + "=" * 60)
+    return "\n".join(lines)
+
+
+def generate_json_report(result: ScanResult, packages: Dict[str, str]) -> str:
+    """Generate JSON report."""
+    report = {
+        "scanned_packages": result.scanned_packages,
+        "vulnerabilities": [
+            {
+                "package": v.package,
+                "version_spec": packages.get(v.package, v.version),
+                "vulnerability_id": v.vuln_id,
+                "severity": v.severity,
+                "cvss_score": v.cvss_score,
+                "summary": v.summary,
+                "details_url": v.details_url,
+                "fixed_versions": v.fixed_versions,
+            }
+            for v in result.vulnerabilities
+        ],
+        "errors": [{"package": p, "error": e} for p, e in result.errors],
+    }
+    return json.dumps(report, indent=2)
+
+
+# --- Main Orchestration ---
+
+
+def run_scan(
+    deps_path: str,
+    min_severity: str = "low",
+    query_osv_api: bool = True
+) -> ScanResult:
+    """
+    Execute the full vulnerability scan pipeline.
+
+    Args:
+        deps_path: Path to requirements-style file
+        min_severity: Minimum severity to include in results
+        query_osv_api: If False, skip API calls (for testing/dry-run)
+
+    Returns:
+        ScanResult with all findings
+    """
+    # 1. Parse dependencies
+    packages = parse_requirements_file(deps_path)
+    if not packages:
+        return ScanResult(scanned_packages=0, vulnerabilities=[], errors=[])
+
+    # 2. Query OSV for each package
+    vulnerabilities: List[Vulnerability] = []
+    errors: List[Tuple[str, str]] = []
+
+    for pkg, version_spec in packages.items():
+        if not query_osv_api:
+            continue
+
+        raw_vulns = query_osv(pkg, version_spec or "")
+        if raw_vulns:
+            parsed = parse_osv_vuln(raw_vulns, pkg, version_spec or "")
+            vulnerabilities.extend(parsed)
+
+    # 3. Filter by severity
+    filtered = filter_by_severity(vulnerabilities, min_severity)
+
+    # 4. Build result
+    return ScanResult(
+        scanned_packages=len(packages),
+        vulnerabilities=filtered,
+        errors=errors
+    )
+
+
+def main() -> int:
+    parser = argparse.ArgumentParser(
+        description="Scan Python dependencies for known vulnerabilities using OSV database"
+    )
+    parser.add_argument(
+        '--deps', '-d',
+        default=DEFAULT_REQUIREMENTS_PATH,
+        help='Path to requirements.txt (default: requirements.txt)'
+    )
+    parser.add_argument(
+        '--output', '-o',
+        choices=['text', 'json', 'markdown'],
+        default='text',
+        help='Output format (default: text)'
+    )
+    parser.add_argument(
+        '--min-severity',
+        default='low',
+        choices=SEVERITY_LEVELS,
+        help='Minimum severity to report (default: low — report all)'
+    )
+    parser.add_argument(
+        '--json',
+        action='store_true',
+        help='Output JSON (shorthand for --output json)'
+    )
+    parser.add_argument(
+        '--quiet', '-q',
+        action='store_true',
+        help='Only print summary, skip detailed vulnerability list'
+    )
+
+    args = parser.parse_args()
+
+    # Update output if --json flag is used
+    if args.json:
+        args.output = 'json'
+
+    # Run the scan
+    result = run_scan(args.deps, args.min_severity, query_osv_api=True)
+
+    # Output
+    if args.output == 'json':
+        print(generate_json_report(result, parse_requirements_file(args.deps)))
+    elif args.output == 'markdown':
+        # Simple markdown table
+        print("# Vulnerability Scan Report\n")
+        print(f"**Packages scanned:** {result.scanned_packages}")
+        print(f"**Vulnerabilities:** {len(result.vulnerabilities)}\n")
+        if result.vulnerabilities:
+            print("| Severity | Package | Version | Vuln ID | Summary |")
+            print("|----------|---------|---------|---------|---------|")
+            for v in result.vulnerabilities:
+                print(f"| {v.severity.upper()} | {v.package} | {v.version} | [{v.vuln_id}]({v.details_url}) | {v.summary[:50]} |")
+        print("\n")
+    else:
+        # text (default)
+        if not args.quiet:
+            print(generate_text_report(result, parse_requirements_file(args.deps)))
+        else:
+            crit = sum(1 for v in result.vulnerabilities if v.severity == 'critical')
+            high = sum(1 for v in result.vulnerabilities if v.severity == 'high')
+            med = sum(1 for v in result.vulnerabilities if v.severity == 'medium')
+            print(f"CRITICAL={crit} HIGH={high} MEDIUM={med} TOTAL={len(result.vulnerabilities)}")
+
+    # Exit code logic: 0 if no vulns at min_severity+, 1 if critical/high found, 2 for other vulns
+    has_critical_high = any(v.severity in ('critical', 'high') for v in result.vulnerabilities)
+    has_other = any(v.severity not in ('critical', 'high') for v in result.vulnerabilities)
+
+    if has_critical_high:
+        return 1
+    elif has_other:
+        return 2
+    return 0
+
+
+if __name__ == '__main__':
+    sys.exit(main())

tests/test_vulnerability_scanner.py

@@ -0,0 +1,237 @@
+#!/usr/bin/env python3
+"""Tests for scripts/vulnerability_scanner.py — 10 tests."""
+
+import json
+import os
+import sys
+import tempfile
+import unittest
+from unittest.mock import patch, MagicMock
+
+sys.path.insert(0, os.path.join(os.path.dirname(__file__) or ".", ".."))
+import importlib.util
+spec = importlib.util.spec_from_file_location(
+    "vulnerability_scanner",
+    os.path.join(os.path.dirname(__file__) or ".", "..", "scripts", "vulnerability_scanner.py"))
+mod = importlib.util.module_from_spec(spec)
+spec.loader.exec_module(mod)
+
+parse_requirements_file = mod.parse_requirements_file
+query_osv = mod.query_osv
+parse_osv_vuln = mod.parse_osv_vuln
+filter_by_severity = mod.filter_by_severity
+Vulnerability = mod.Vulnerability
+
+
+# --- Test Data ---
+
+SAMPLE_OSV_RESPONSE = [
+    {
+        "id": "GHSA-xxxx-xxxx-xxxx",
+        "summary": " Arbitrary code execution in django",
+        "severity": [{"type": "CVSS_V3", "score": {"baseScore": 9.8, "baseSeverity": "CRITICAL"}}],
+        "affected": [{
+            "ranges": [{
+                "events": [
+                    {"introduced": "0"},
+                    {"fixed": "3.2.14"}
+                ]
+            }]
+        }]
+    },
+    {
+        "id": "PYSEC-2024-1234",
+        "summary": " Denial of service in cryptography",
+        "severity": [{"type": "CVSS_V3", "score": {"baseScore": 5.3, "baseSeverity": "MEDIUM"}}],
+        "affected": [{
+            "ranges": [{
+                "events": [
+                    {"introduced": "0"},
+                    {"fixed": "42.0.0"}
+                ]
+            }]
+        }]
+    }
+]
+
+
+# --- Tests ---
+
+
+def test_parse_requirements_simple():
+    """Should parse a simple requirements file."""
+    with tempfile.NamedTemporaryFile(mode='w', suffix='.txt', delete=False) as f:
+        f.write("django==4.2.0\n")
+        f.write("requests>=2.28.0\n")
+        f.write("click~=8.0\n")
+        f.flush()
+        pkgs = parse_requirements_file(f.name)
+        os.unlink(f.name)
+
+    assert "django" in pkgs
+    assert pkgs["django"] == "==4.2.0"
+    assert "requests" in pkgs
+    assert pkgs["requests"] == ">=2.28.0"
+    assert "click" in pkgs
+    print("PASS: test_parse_requirements_simple")
+
+
+def test_parse_requirements_extras_and_comments():
+    """Should skip comments, blank lines, and handle package extras."""
+    with tempfile.NamedTemporaryFile(mode='w', suffix='.txt', delete=False) as f:
+        f.write("# This is a comment\n")
+        f.write("django[argon2]==4.2.0\n")
+        f.write("\n")
+        f.write("   requests   >=2.28.0   # inline comment\n")
+        f.flush()
+        pkgs = parse_requirements_file(f.name)
+        os.unlink(f.name)
+
+    assert "django" in pkgs
+    assert pkgs["django"] == "==4.2.0"
+    assert "requests" in pkgs
+    # Version should capture the comparison
+    assert ">=" in pkgs["requests"]
+    print("PASS: test_parse_requirements_extras_and_comments")
+
+
+def test_parse_requirements_include_recursive():
+    """Should follow -r includes up to depth 3."""
+    with tempfile.TemporaryDirectory() as tmpdir:
+        # Main requirements.txt
+        main = os.path.join(tmpdir, "requirements.txt")
+        with open(main, 'w') as f:
+            f.write("django==4.2.0\n")
+            f.write("-r base.txt\n")
+
+        # base.txt
+        base = os.path.join(tmpdir, "base.txt")
+        with open(base, 'w') as f:
+            f.write("requests>=2.28.0\n")
+            f.write("-r deep.txt\n")
+
+        # deep.txt
+        deep = os.path.join(tmpdir, "deep.txt")
+        with open(deep, 'w') as f:
+            f.write("click~=8.0\n")
+
+        pkgs = parse_requirements_file(main)
+
+        assert "django" in pkgs
+        assert "requests" in pkgs
+        assert "click" in pkgs
+        print("PASS: test_parse_requirements_include_recursive")
+
+
+def test_parse_requirements_skip_editable():
+    """Should skip -e editable installs and other flags."""
+    with tempfile.NamedTemporaryFile(mode='w', suffix='.txt', delete=False) as f:
+        f.write("-e git+https://github.com/user/repo.git@branch#egg=package\n")
+        f.write("--index-url https://pypi.org/simple\n")
+        f.write("django==4.2.0\n")
+        f.flush()
+        pkgs = parse_requirements_file(f.name)
+        os.unlink(f.name)
+
+    assert "django" in pkgs
+    assert "package" not in pkgs  # should not pick up editable name
+    print("PASS: test_parse_requirements_skip_editable")
+
+
+def test_parse_requirements_nonexistent():
+    """Should exit with error on missing file."""
+    with patch('sys.exit') as mock_exit:
+        pkgs = parse_requirements_file("/nonexistent/requirements.txt")
+        mock_exit.assert_called_once_with(1)
+    print("PASS: test_parse_requirements_nonexistent")
+
+
+def test_filter_by_severity():
+    """Should filter vulnerabilities by severity threshold."""
+    vulns = [
+        Vulnerability("pkg1", "==1.0", "V1", "critical", 9.8, "summary", "url", []),
+        Vulnerability("pkg2", "==2.0", "V2", "high", 7.5, "summary", "url", []),
+        Vulnerability("pkg3", "==3.0", "V3", "medium", 5.0, "summary", "url", []),
+        Vulnerability("pkg4", "==4.0", "V4", "low", 2.0, "summary", "url", []),
+    ]
+
+    # min_severity: low includes all
+    filtered = filter_by_severity(vulns, "low")
+    assert len(filtered) == 4
+
+    # min_severity: medium excludes low
+    filtered = filter_by_severity(vulns, "medium")
+    assert len(filtered) == 3
+    assert all(v.severity in ("critical", "high", "medium") for v in filtered)
+
+    # min_severity: high excludes medium + low
+    filtered = filter_by_severity(vulns, "high")
+    assert len(filtered) == 2
+
+    # min_severity: critical only
+    filtered = filter_by_severity(vulns, "critical")
+    assert len(filtered) == 1
+
+    print("PASS: test_filter_by_severity")
+
+
+def test_parse_osv_vuln():
+    """Should parse OSV API response correctly."""
+    parsed = parse_osv_vuln(SAMPLE_OSV_RESPONSE, "django", "==4.2.0")
+
+    assert len(parsed) == 2
+    assert parsed[0].package == "django"
+    assert parsed[0].vuln_id == "GHSA-xxxx-xxxx-xxxx"
+    assert parsed[0].severity == "critical"
+    assert parsed[0].cvss_score == 9.8
+    assert parsed[1].severity == "medium"
+    assert parsed[1].cvss_score == 5.3
+    print("PASS: test_parse_osv_vuln")
+
+
+def test_parse_osv_vuln_empty():
+    """Should handle empty OSV response."""
+    parsed = parse_osv_vuln([], "django", "==4.2.0")
+    assert parsed == []
+    print("PASS: test_parse_osv_vuln_empty")
+
+
+def test_query_osv_network_success():
+    """Should successfully query OSV API for a real known vulnerable package."""
+    # Query for an old django version that likely has known CVEs
+    # This test actually hits the network — tagged as integration
+    vulns = query_osv("django", "==3.2.0")
+    # We don't assert specific results since vulns change over time
+    # But we assert the function returns a list and doesn't error
+    assert isinstance(vulns, list)
+    print("PASS: test_query_osv_network_success")
+
+
+def test_query_osv_404_no_vulns():
+    """OSV returns empty list for packages with no vulns (404-like)."""
+    # Mock a 404 response from OSV API
+    with patch('urllib.request.urlopen') as mock_urlopen:
+        mock_response = MagicMock()
+        mock_response.read.return_value = b'{"vulns": []}'
+        mock_response.__enter__ = lambda self: self
+        mock_response.__exit__ = lambda self, *args: None
+        mock_urlopen.return_value = mock_response
+
+        result = query_osv("nonexistent-package-xyz123", "==1.0.0")
+        assert result == []
+    print("PASS: test_query_osv_404_no_vulns")
+
+
+if __name__ == '__main__':
+    # Run all tests
+    test_parse_requirements_simple()
+    test_parse_requirements_extras_and_comments()
+    test_parse_requirements_include_recursive()
+    test_parse_requirements_skip_editable()
+    test_parse_requirements_nonexistent()
+    test_filter_by_severity()
+    test_parse_osv_vuln()
+    test_parse_osv_vuln_empty()
+    test_query_osv_network_success()
+    test_query_osv_404_no_vulns()
+    print("\nAll tests passed.")