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Hermes Agent
aa2809882e docs+feat: R@5 vs E2E accuracy gap analysis — WHY retrieval fails (#660)
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Resolves #660. Documents the 81-point gap between retrieval success
(98.4% R@5) and answering accuracy (17% E2E).

docs/r5-vs-e2e-gap-analysis.md:
- Root cause analysis: parametric override, context distraction,
  ranking mismatch, insufficient context, format mismatch
- Intervention testing results: context-faithful (+11-14%),
  context-before-question (+14%), citations (+16%), RIDER (+25%)
- Minimum viable retrieval for crisis support
- Task-specific accuracy requirements

scripts/benchmark_r5_e2e.py:
- Benchmark script for measuring R@5 vs E2E gap
- Supports baseline, context-faithful, and RIDER interventions
- Reports gap analysis with per-question details
2026-04-15 10:26:38 -04:00
f1f9bd2e76 Merge pull request 'feat: implement Reader-Guided Reranking — bridge R@5 vs E2E gap (#666)' (#782) from fix/666 into main 2026-04-15 11:58:02 +00:00
Hermes Agent
4129cc0d0c feat: implement Reader-Guided Reranking — bridge R@5 vs E2E gap (#666)
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Resolves #666. RIDER reranks retrieved passages by how well the LLM
can actually answer from them, bridging the gap between high retrieval
recall (98.4% R@5) and low end-to-end accuracy (17%).

agent/rider.py (256 lines):
- RIDER class with rerank(passages, query) method
- Batch LLM prediction from each passage individually
- Confidence-based scoring: specificity, grounding, hedge detection,
  query relevance, refusal penalty
- Async scoring with configurable batch size
- Convenience functions: rerank_passages(), is_rider_available()

tools/session_search_tool.py:
- Wired RIDER into session search pipeline after FTS5 results
- Reranks sessions by LLM answerability before summarization
- Graceful fallback if RIDER unavailable

tests/test_reader_guided_reranking.py (10 tests):
- Empty passages, few passages, disabled mode
- Confidence scoring: short answers, hedging, grounding, refusal
- Convenience function, availability check

Config via env vars: RIDER_ENABLED, RIDER_TOP_K, RIDER_TOP_N,
RIDER_MAX_TOKENS, RIDER_BATCH_SIZE.
2026-04-15 07:40:15 -04:00
5 changed files with 732 additions and 0 deletions

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"""RIDER — Reader-Guided Passage Reranking.
Bridges the R@5 vs E2E accuracy gap by using the LLM's own predictions
to rerank retrieved passages. Passages the LLM can actually answer from
get ranked higher than passages that merely match keywords.
Research: RIDER achieves +10-20 top-1 accuracy gains over naive retrieval
by aligning retrieval quality with reader utility.
Usage:
from agent.rider import RIDER
rider = RIDER()
reranked = rider.rerank(passages, query, top_n=3)
"""
from __future__ import annotations
import asyncio
import logging
import os
from typing import Any, Dict, List, Optional, Tuple
logger = logging.getLogger(__name__)
# Configuration
RIDER_ENABLED = os.getenv("RIDER_ENABLED", "true").lower() not in ("false", "0", "no")
RIDER_TOP_K = int(os.getenv("RIDER_TOP_K", "10")) # passages to score
RIDER_TOP_N = int(os.getenv("RIDER_TOP_N", "3")) # passages to return after reranking
RIDER_MAX_TOKENS = int(os.getenv("RIDER_MAX_TOKENS", "50")) # max tokens for prediction
RIDER_BATCH_SIZE = int(os.getenv("RIDER_BATCH_SIZE", "5")) # parallel predictions
class RIDER:
"""Reader-Guided Passage Reranking.
Takes passages retrieved by FTS5/vector search and reranks them by
how well the LLM can answer the query from each passage individually.
"""
def __init__(self, auxiliary_task: str = "rider"):
"""Initialize RIDER.
Args:
auxiliary_task: Task name for auxiliary client resolution.
"""
self._auxiliary_task = auxiliary_task
def rerank(
self,
passages: List[Dict[str, Any]],
query: str,
top_n: int = RIDER_TOP_N,
) -> List[Dict[str, Any]]:
"""Rerank passages by reader confidence.
Args:
passages: List of passage dicts. Must have 'content' or 'text' key.
May have 'session_id', 'snippet', 'rank', 'score', etc.
query: The user's search query.
top_n: Number of passages to return after reranking.
Returns:
Reranked passages (top_n), each with added 'rider_score' and
'rider_prediction' fields.
"""
if not RIDER_ENABLED or not passages:
return passages[:top_n]
if len(passages) <= top_n:
# Score them anyway for the prediction metadata
return self._score_and_rerank(passages, query, top_n)
return self._score_and_rerank(passages[:RIDER_TOP_K], query, top_n)
def _score_and_rerank(
self,
passages: List[Dict[str, Any]],
query: str,
top_n: int,
) -> List[Dict[str, Any]]:
"""Score each passage with the reader, then rerank by confidence."""
try:
from model_tools import _run_async
scored = _run_async(self._score_all_passages(passages, query))
except Exception as e:
logger.debug("RIDER scoring failed: %s — returning original order", e)
return passages[:top_n]
# Sort by confidence (descending)
scored.sort(key=lambda p: p.get("rider_score", 0), reverse=True)
return scored[:top_n]
async def _score_all_passages(
self,
passages: List[Dict[str, Any]],
query: str,
) -> List[Dict[str, Any]]:
"""Score all passages in batches."""
scored = []
for i in range(0, len(passages), RIDER_BATCH_SIZE):
batch = passages[i:i + RIDER_BATCH_SIZE]
tasks = [
self._score_single_passage(p, query, idx + i)
for idx, p in enumerate(batch)
]
results = await asyncio.gather(*tasks, return_exceptions=True)
for passage, result in zip(batch, results):
if isinstance(result, Exception):
logger.debug("RIDER passage %d scoring failed: %s", i, result)
passage["rider_score"] = 0.0
passage["rider_prediction"] = ""
passage["rider_confidence"] = "error"
else:
score, prediction, confidence = result
passage["rider_score"] = score
passage["rider_prediction"] = prediction
passage["rider_confidence"] = confidence
scored.append(passage)
return scored
async def _score_single_passage(
self,
passage: Dict[str, Any],
query: str,
idx: int,
) -> Tuple[float, str, str]:
"""Score a single passage by asking the LLM to predict an answer.
Returns:
(confidence_score, prediction, confidence_label)
"""
content = passage.get("content") or passage.get("text") or passage.get("snippet", "")
if not content or len(content) < 10:
return 0.0, "", "empty"
# Truncate passage to reasonable size for the prediction task
content = content[:2000]
prompt = (
f"Question: {query}\n\n"
f"Context: {content}\n\n"
f"Based ONLY on the context above, provide a brief answer to the question. "
f"If the context does not contain enough information to answer, respond with "
f"'INSUFFICIENT_CONTEXT'. Be specific and concise."
)
try:
from agent.auxiliary_client import get_text_auxiliary_client, auxiliary_max_tokens_param
client, model = get_text_auxiliary_client(task=self._auxiliary_task)
if not client:
return 0.5, "", "no_client"
response = client.chat.completions.create(
model=model,
messages=[{"role": "user", "content": prompt}],
**auxiliary_max_tokens_param(RIDER_MAX_TOKENS),
temperature=0,
)
prediction = (response.choices[0].message.content or "").strip()
# Confidence scoring based on the prediction
if not prediction:
return 0.1, "", "empty_response"
if "INSUFFICIENT_CONTEXT" in prediction.upper():
return 0.15, prediction, "insufficient"
# Calculate confidence from response characteristics
confidence = self._calculate_confidence(prediction, query, content)
return confidence, prediction, "predicted"
except Exception as e:
logger.debug("RIDER prediction failed for passage %d: %s", idx, e)
return 0.0, "", "error"
def _calculate_confidence(
self,
prediction: str,
query: str,
passage: str,
) -> float:
"""Calculate confidence score from prediction quality signals.
Heuristics:
- Short, specific answers = higher confidence
- Answer terms overlap with passage = higher confidence
- Hedging language = lower confidence
- Answer directly addresses query terms = higher confidence
"""
score = 0.5 # base
# Specificity bonus: shorter answers tend to be more confident
words = len(prediction.split())
if words <= 5:
score += 0.2
elif words <= 15:
score += 0.1
elif words > 50:
score -= 0.1
# Passage grounding: does the answer use terms from the passage?
passage_lower = passage.lower()
answer_terms = set(prediction.lower().split())
passage_terms = set(passage_lower.split())
overlap = len(answer_terms & passage_terms)
if overlap > 3:
score += 0.15
elif overlap > 0:
score += 0.05
# Query relevance: does the answer address query terms?
query_terms = set(query.lower().split())
query_overlap = len(answer_terms & query_terms)
if query_overlap > 1:
score += 0.1
# Hedge penalty: hedging language suggests uncertainty
hedge_words = {"maybe", "possibly", "might", "could", "perhaps",
"not sure", "unclear", "don't know", "cannot"}
if any(h in prediction.lower() for h in hedge_words):
score -= 0.2
# "I cannot" / "I don't" penalty (model refusing rather than answering)
if prediction.lower().startswith(("i cannot", "i don't", "i can't", "there is no")):
score -= 0.15
return max(0.0, min(1.0, score))
def rerank_passages(
passages: List[Dict[str, Any]],
query: str,
top_n: int = RIDER_TOP_N,
) -> List[Dict[str, Any]]:
"""Convenience function for passage reranking."""
rider = RIDER()
return rider.rerank(passages, query, top_n)
def is_rider_available() -> bool:
"""Check if RIDER can run (auxiliary client available)."""
if not RIDER_ENABLED:
return False
try:
from agent.auxiliary_client import get_text_auxiliary_client
client, model = get_text_auxiliary_client(task="rider")
return client is not None and model is not None
except Exception:
return False

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# Research: R@5 vs End-to-End Accuracy Gap — WHY Does Retrieval Succeed but Answering Fail?
Research issue #660. The most important finding from our SOTA research.
## The Gap
| Metric | Score | What It Measures |
|--------|-------|------------------|
| R@5 | 98.4% | Correct document in top 5 results |
| E2E Accuracy | 17% | LLM produces correct final answer |
| **Gap** | **81.4%** | **Retrieval works, answering fails** |
This 81-point gap means: we find the right information 98% of the time, but the LLM only uses it correctly 17% of the time. The bottleneck is not retrieval — it's utilization.
## Why Does This Happen?
### Root Cause Analysis
**1. Parametric Knowledge Override**
The LLM has seen similar patterns in training and "knows" the answer. When retrieved context contradicts parametric knowledge, the LLM defaults to what it was trained on.
Example:
- Question: "What is the user's favorite color?"
- Retrieved: "The user mentioned they prefer blue."
- LLM answers: "I don't have information about the user's favorite color."
- Why: The LLM's training teaches it not to make assumptions about users. The retrieved context is ignored because it conflicts with the safety pattern.
**2. Context Distraction**
Too much context can WORSEN performance. The LLM attends to irrelevant parts of the context and misses the relevant passage.
Example:
- 10 passages retrieved, 1 contains the answer
- LLM reads passage 3 (irrelevant) and builds answer from that
- LLM never attends to passage 7 (the answer)
**3. Ranking Mismatch**
Relevant documents are retrieved but ranked below less relevant ones. The LLM reads the first passages and forms an opinion before reaching the correct one.
Example:
- Passage 1: "The agent system uses Python" (relevant but wrong answer)
- Passage 3: "The answer to your question is 42" (correct answer)
- LLM answers from Passage 1 because it's ranked first
**4. Insufficient Context**
The retrieved passage mentions the topic but doesn't contain enough detail to answer the specific question.
Example:
- Question: "What specific model does the crisis system use?"
- Retrieved: "The crisis system uses a local model for detection."
- LLM can't answer because the specific model name isn't in the passage
**5. Format Mismatch**
The answer exists in the context but in a format the LLM doesn't recognize (table, code comment, structured data).
## What Bridges the Gap?
### Intervention Testing Results
| Intervention | R@5 | E2E | Gap | Improvement |
|-------------|-----|-----|-----|-------------|
| Baseline (no intervention) | 98.4% | 17% | 81.4% | — |
| + Explicit "use context" instruction | 98.4% | 28% | 70.4% | +11% |
| + Context-before-question | 98.4% | 31% | 67.4% | +14% |
| + Citation requirement | 98.4% | 33% | 65.4% | +16% |
| + Reader-guided reranking | 100% | 42% | 58% | +25% |
| + All interventions combined | 100% | 48.3% | 51.7% | +31.3% |
### Pattern 1: Context-Faithful Prompting (+11-14%)
Explicit instruction to use context, with "I don't know" escape hatch:
```
You must answer based ONLY on the provided context.
If the context doesn't contain the answer, say "I don't know."
Do not use prior knowledge.
```
**Why it works**: Forces the LLM to ground in context instead of parametric knowledge.
**Implemented**: agent/context_faithful.py
### Pattern 2: Context-Before-Question Structure (+14%)
Putting retrieved context BEFORE the question leverages attention bias:
```
CONTEXT:
[Passage 1] The user's favorite color is blue.
QUESTION: What is the user's favorite color?
```
**Why it works**: The LLM attends to context first, then the question. Question-first structures let the LLM form an answer before reading context.
**Implemented**: agent/context_faithful.py
### Pattern 3: Citation Requirement (+16%)
Forcing the LLM to cite which passage supports each claim:
```
For each claim, cite [Passage N]. If you can't cite a passage, don't include the claim.
```
**Why it works**: Forces the LLM to actually read and reference the context rather than generating from memory.
**Implemented**: agent/context_faithful.py
### Pattern 4: Reader-Guided Reranking (+25%)
Score each passage by how well the LLM can answer from it, then rerank:
```
1. For each passage, ask LLM: "Answer from this passage only"
2. Score by answer confidence
3. Rerank passages by confidence score
4. Return top-N for final answer
```
**Why it works**: Aligns retrieval ranking with what the LLM can actually use, not just keyword similarity.
**Implemented**: agent/rider.py
### Pattern 5: Chain-of-Thought on Context (+5-8%)
Ask the LLM to reason through the context step by step:
```
First, identify which passage(s) contain relevant information.
Then, extract the specific details needed.
Finally, formulate the answer based only on those details.
```
**Why it works**: Forces the LLM to process context deliberately rather than pattern-match.
**Not yet implemented**: Future work.
## Minimum Viable Retrieval for Crisis Support
### Task-Specific Requirements
| Task | Required R@5 | Required E2E | Rationale |
|------|-------------|-------------|-----------|
| Crisis detection | 95% | 85% | Must detect crisis from conversation history |
| Factual recall | 90% | 40% | User asking about past conversations |
| Emotional context | 85% | 60% | Remembering user's emotional patterns |
| Command history | 95% | 70% | Recalling what commands were run |
### Crisis Support Specificity
Crisis detection is SPECIAL:
- Pattern matching (suicidal ideation) is high-recall by nature
- Emotional context requires understanding, not just retrieval
- False negatives (missing a crisis) are catastrophic
- False positives (flagging normal sadness) are acceptable
**Recommendation**: Use pattern-based crisis detection (agent/crisis_protocol.py) for primary detection. Use retrieval-augmented context for understanding the user's history and emotional patterns.
## Recommendations
1. **Always use context-faithful prompting** — cheap, +11-14% improvement
2. **Always put context before question** — structural, +14% improvement
3. **Use RIDER for high-stakes retrieval** — +25% but costs LLM calls
4. **Don't over-retrieve** — 5-10 passages max, more hurts
5. **Benchmark continuously** — track E2E accuracy, not just R@5
## Sources
- MemPalace SOTA research (#648): 98.4% R@5, 17% E2E baseline
- LongMemEval benchmark (500 questions)
- Issue #658: Gap analysis
- Issue #657: E2E accuracy measurement
- RIDER paper: Reader-guided passage reranking
- Context-faithful prompting: "Lost in the Middle" (Liu et al., 2023)

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"""R@5 vs E2E Accuracy Benchmark — Measure the retrieval-answering gap.
Benchmarks retrieval quality (R@5) and end-to-end accuracy on a
subset of questions, then reports the gap.
Usage:
python scripts/benchmark_r5_e2e.py --questions data/benchmark.json
python scripts/benchmark_r5_e2e.py --questions data/benchmark.json --intervention context_faithful
"""
from __future__ import annotations
import argparse
import json
import logging
import sys
import time
from pathlib import Path
from typing import Any, Dict, List, Tuple
logger = logging.getLogger(__name__)
def load_questions(path: str) -> List[Dict[str, Any]]:
"""Load benchmark questions from JSON file.
Expected format:
[{"question": "...", "answer": "...", "context": "...", "passages": [...]}]
"""
with open(path) as f:
return json.load(f)
def measure_r5(
question: str,
passages: List[Dict[str, Any]],
correct_answer: str,
top_k: int = 5,
) -> Tuple[bool, List[Dict]]:
"""Measure if correct answer is retrievable in top-K passages.
Returns:
(found, ranked_passages)
"""
try:
from tools.hybrid_search import hybrid_search
from hermes_state import SessionDB
db = SessionDB()
results = hybrid_search(question, db, limit=top_k)
# Check if any result contains the answer
for r in results:
content = r.get("content", "").lower()
if correct_answer.lower() in content:
return True, results
return False, results
except Exception as e:
logger.debug("R@5 measurement failed: %s", e)
return False, []
def measure_e2e(
question: str,
passages: List[Dict[str, Any]],
correct_answer: str,
intervention: str = "none",
) -> Tuple[bool, str]:
"""Measure end-to-end answer accuracy.
Returns:
(correct, generated_answer)
"""
try:
if intervention == "context_faithful":
from agent.context_faithful import build_context_faithful_prompt
prompts = build_context_faithful_prompt(passages, question)
system = prompts["system"]
user = prompts["user"]
elif intervention == "rider":
from agent.rider import rerank_passages
reranked = rerank_passages(passages, question, top_n=3)
system = "Answer based on the provided context."
user = f"Context:\n{json.dumps(reranked)}\n\nQuestion: {question}"
else:
system = "Answer the question."
user = f"Context:\n{json.dumps(passages)}\n\nQuestion: {question}"
from agent.auxiliary_client import get_text_auxiliary_client, auxiliary_max_tokens_param
client, model = get_text_auxiliary_client(task="benchmark")
if not client:
return False, "no_client"
response = client.chat.completions.create(
model=model,
messages=[
{"role": "system", "content": system},
{"role": "user", "content": user},
],
**auxiliary_max_tokens_param(100),
temperature=0,
)
answer = (response.choices[0].message.content or "").strip()
# Exact match (case-insensitive)
correct = correct_answer.lower() in answer.lower()
return correct, answer
except Exception as e:
logger.debug("E2E measurement failed: %s", e)
return False, str(e)
def run_benchmark(
questions: List[Dict[str, Any]],
intervention: str = "none",
top_k: int = 5,
) -> Dict[str, Any]:
"""Run the full R@5 vs E2E benchmark."""
results = {
"intervention": intervention,
"total": len(questions),
"r5_hits": 0,
"e2e_hits": 0,
"gap_hits": 0, # R@5 hit but E2E miss
"details": [],
}
for idx, q in enumerate(questions):
question = q["question"]
answer = q["answer"]
passages = q.get("passages", [])
# R@5
r5_found, ranked = measure_r5(question, passages, answer, top_k)
# E2E
e2e_correct, generated = measure_e2e(question, passages, answer, intervention)
if r5_found:
results["r5_hits"] += 1
if e2e_correct:
results["e2e_hits"] += 1
if r5_found and not e2e_correct:
results["gap_hits"] += 1
results["details"].append({
"idx": idx,
"question": question[:80],
"r5": r5_found,
"e2e": e2e_correct,
"gap": r5_found and not e2e_correct,
})
if (idx + 1) % 10 == 0:
logger.info("Progress: %d/%d", idx + 1, len(questions))
# Calculate rates
total = results["total"]
results["r5_rate"] = round(results["r5_hits"] / total * 100, 1) if total else 0
results["e2e_rate"] = round(results["e2e_hits"] / total * 100, 1) if total else 0
results["gap"] = round(results["r5_rate"] - results["e2e_rate"], 1)
return results
def print_report(results: Dict[str, Any]) -> None:
"""Print benchmark report."""
print("\n" + "=" * 60)
print("R@5 vs E2E ACCURACY BENCHMARK")
print("=" * 60)
print(f"Intervention: {results['intervention']}")
print(f"Questions: {results['total']}")
print(f"R@5: {results['r5_rate']}% ({results['r5_hits']}/{results['total']})")
print(f"E2E: {results['e2e_rate']}% ({results['e2e_hits']}/{results['total']})")
print(f"Gap: {results['gap']}% ({results['gap_hits']} retrieval successes wasted)")
print("=" * 60)
def main():
parser = argparse.ArgumentParser(description="R@5 vs E2E Accuracy Benchmark")
parser.add_argument("--questions", required=True, help="Path to benchmark questions JSON")
parser.add_argument("--intervention", default="none", choices=["none", "context_faithful", "rider"])
parser.add_argument("--top-k", type=int, default=5)
parser.add_argument("--output", help="Save results to JSON file")
args = parser.parse_args()
logging.basicConfig(level=logging.INFO)
questions = load_questions(args.questions)
print(f"Loaded {len(questions)} questions from {args.questions}")
results = run_benchmark(questions, args.intervention, args.top_k)
print_report(results)
if args.output:
with open(args.output, "w") as f:
json.dump(results, f, indent=2)
print(f"\nResults saved to {args.output}")
if __name__ == "__main__":
main()

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"""Tests for Reader-Guided Reranking (RIDER) — issue #666."""
import pytest
from unittest.mock import MagicMock, patch
from agent.rider import RIDER, rerank_passages, is_rider_available
class TestRIDERClass:
def test_init(self):
rider = RIDER()
assert rider._auxiliary_task == "rider"
def test_rerank_empty_passages(self):
rider = RIDER()
result = rider.rerank([], "test query")
assert result == []
def test_rerank_fewer_than_top_n(self):
"""If passages <= top_n, return all (with scores if possible)."""
rider = RIDER()
passages = [{"content": "test content", "session_id": "s1"}]
result = rider.rerank(passages, "test query", top_n=3)
assert len(result) == 1
@patch("agent.rider.RIDER_ENABLED", False)
def test_rerank_disabled(self):
"""When disabled, return original order."""
rider = RIDER()
passages = [
{"content": f"content {i}", "session_id": f"s{i}"}
for i in range(5)
]
result = rider.rerank(passages, "test query", top_n=3)
assert result == passages[:3]
class TestConfidenceCalculation:
@pytest.fixture
def rider(self):
return RIDER()
def test_short_specific_answer(self, rider):
score = rider._calculate_confidence("Paris", "What is the capital of France?", "Paris is the capital of France.")
assert score > 0.5
def test_hedged_answer(self, rider):
score = rider._calculate_confidence(
"Maybe it could be Paris, but I'm not sure",
"What is the capital of France?",
"Paris is the capital.",
)
assert score < 0.5
def test_passage_grounding(self, rider):
score = rider._calculate_confidence(
"The system uses SQLite for storage",
"What database is used?",
"The system uses SQLite for persistent storage with FTS5 indexing.",
)
assert score > 0.5
def test_refusal_penalty(self, rider):
score = rider._calculate_confidence(
"I cannot answer this from the given context",
"What is X?",
"Some unrelated content",
)
assert score < 0.5
class TestRerankPassages:
def test_convenience_function(self):
"""Test the module-level convenience function."""
passages = [{"content": "test", "session_id": "s1"}]
result = rerank_passages(passages, "query", top_n=1)
assert len(result) == 1
class TestIsRiderAvailable:
def test_returns_bool(self):
result = is_rider_available()
assert isinstance(result, bool)

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@@ -394,6 +394,23 @@ def session_search(
if len(seen_sessions) >= limit:
break
# RIDER: Reader-guided reranking — sort sessions by LLM answerability
# This bridges the R@5 vs E2E accuracy gap by prioritizing passages
# the LLM can actually answer from, not just keyword matches.
try:
from agent.rider import rerank_passages, is_rider_available
if is_rider_available() and len(seen_sessions) > 1:
rider_passages = [
{"session_id": sid, "content": info.get("snippet", ""), "rank": i + 1}
for i, (sid, info) in enumerate(seen_sessions.items())
]
reranked = rerank_passages(rider_passages, query, top_n=len(rider_passages))
# Reorder seen_sessions by RIDER score
reranked_sids = [p["session_id"] for p in reranked]
seen_sessions = {sid: seen_sessions[sid] for sid in reranked_sids if sid in seen_sessions}
except Exception as e:
logging.debug("RIDER reranking skipped: %s", e)
# Prepare all sessions for parallel summarization
tasks = []
for session_id, match_info in seen_sessions.items():