fix(genome): generate GENOME.md for timmy-home itself

The codebase-genome pipeline was in place but timmy-home's own
GENOME.md was either missing or contained content for another repo.
Run the pipeline to produce the correct analysis in place.

Closes #665

GENOME.md

@@ -1,209 +1,144 @@
-# GENOME.md — the-nexus
+# GENOME.md — Timmy_Foundation/timmy-home
+
+Generated by `pipelines/codebase_genome.py`.
 
 ## Project Overview
 
-`the-nexus` is a hybrid repo that combines three layers in one codebase:
+Timmy Foundation's home repository for development operations and configurations.
 
-1. A browser-facing world shell rooted in `index.html`, `boot.js`, `bootstrap.mjs`, `app.js`, `style.css`, `portals.json`, `vision.json`, `manifest.json`, and `gofai_worker.js`
-2. A Python realtime bridge centered on `server.py` plus harness code under `nexus/`
-3. A memory / fleet / operator layer spanning `mempalace/`, `mcp_servers/`, `multi_user_bridge.py`, and supporting scripts
+- Text files indexed: 3181
+- Source and script files: 231
+- Test files: 95
+- Documentation files: 755
 
-The repo is not a clean single-purpose frontend and not just a backend harness. It is a mixed world/runtime/ops repository where browser rendering, WebSocket telemetry, MCP-driven game harnesses, and fleet memory tooling coexist.
-
-Grounded repo facts from this checkout:
-- Browser shell files exist at repo root: `index.html`, `app.js`, `style.css`, `manifest.json`, `gofai_worker.js`
-- Data/config files also live at repo root: `portals.json`, `vision.json`
-- Realtime bridge exists in `server.py`
-- Game harnesses exist in `nexus/morrowind_harness.py` and `nexus/bannerlord_harness.py`
-- Memory/fleet sync exists in `mempalace/tunnel_sync.py`
-- Desktop/game automation MCP servers exist in `mcp_servers/desktop_control_server.py` and `mcp_servers/steam_info_server.py`
-- Validation exists in `tests/test_browser_smoke.py`, `tests/test_portals_json.py`, `tests/test_index_html_integrity.py`, and `tests/test_repo_truth.py`
-
-The current architecture is best understood as a sovereign world shell plus operator/game harness backend, with accumulated documentation drift from multiple restoration and migration efforts.
-
-## Architecture Diagram
+## Architecture
 
 ```mermaid
 graph TD
-    browser[Index HTML Shell\nindex.html -> boot.js -> bootstrap.mjs -> app.js]
-    assets[Root Assets\nstyle.css\nmanifest.json\ngofai_worker.js]
-    data[World Data\nportals.json\nvision.json]
-    ws[Realtime Bridge\nserver.py\nWebSocket broadcast hub]
-    gofai[In-browser GOFAI\nSymbolicEngine\nNeuroSymbolicBridge\nsetupGOFAI/updateGOFAI]
-    harnesses[Python Harnesses\nnexus/morrowind_harness.py\nnexus/bannerlord_harness.py]
-    mcp[MCP Adapters\nmcp_servers/desktop_control_server.py\nmcp_servers/steam_info_server.py]
-    memory[Memory + Fleet\nmempalace/tunnel_sync.py\nmempalace.js]
-    bridge[Operator / MUD Bridge\nmulti_user_bridge.py\ncommands/timmy_commands.py]
-    tests[Verification\ntests/test_browser_smoke.py\ntests/test_portals_json.py\ntests/test_repo_truth.py]
-    docs[Contracts + Drift Docs\nBROWSER_CONTRACT.md\nREADME.md\nCLAUDE.md\nINVESTIGATION_ISSUE_1145.md]
-
-    browser --> assets
-    browser --> data
-    browser --> gofai
-    browser --> ws
-    harnesses --> mcp
-    harnesses --> ws
-    bridge --> ws
-    memory --> ws
-    tests --> browser
-    tests --> data
-    tests --> docs
-    docs --> browser
+  repo_root["repo"]
+  angband["angband"]
+  ansible["ansible"]
+  briefings["briefings"]
+  codebase_genome["codebase_genome"]
+  config["config"]
+  configs["configs"]
+  conftest["conftest"]
+  dns_records["dns-records"]
+  evennia["evennia"]
+  evennia_tools["evennia_tools"]
+  repo_root --> angband
+  repo_root --> ansible
+  repo_root --> briefings
+  repo_root --> codebase_genome
+  repo_root --> config
+  repo_root --> configs
 ```
 
-## Entry Points and Data Flow
+## Entry Points
 
-### Primary entry points
+- `codebase_genome.py` — python main guard (`python3 codebase_genome.py`)
+- `gemini-fallback-setup.sh` — operational script (`bash gemini-fallback-setup.sh`)
+- `morrowind/hud.sh` — operational script (`bash morrowind/hud.sh`)
+- `pipelines/codebase_genome.py` — python main guard (`python3 pipelines/codebase_genome.py`)
+- `scripts/agent_pr_gate.py` — operational script (`python3 scripts/agent_pr_gate.py`)
+- `scripts/audit_trail.py` — operational script (`python3 scripts/audit_trail.py`)
+- `scripts/auto_restart_agent.sh` — operational script (`bash scripts/auto_restart_agent.sh`)
+- `scripts/autonomous_issue_creator.py` — operational script (`python3 scripts/autonomous_issue_creator.py`)
+- `scripts/backlog_cleanup.py` — operational script (`python3 scripts/backlog_cleanup.py`)
+- `scripts/backlog_triage.py` — operational script (`python3 scripts/backlog_triage.py`)
+- `scripts/backlog_triage_cron.sh` — operational script (`bash scripts/backlog_triage_cron.sh`)
+- `scripts/backup_pipeline.sh` — operational script (`bash scripts/backup_pipeline.sh`)
 
-- `index.html` — root browser entry point
-- `boot.js` — startup selector; `tests/boot.test.js` shows it chooses file-mode vs HTTP/module-mode and injects `bootstrap.mjs` when served over HTTP
-- `bootstrap.mjs` — module bootstrap for the browser shell
-- `app.js` — main browser runtime; owns world state, GOFAI wiring, metrics polling, and portal/UI logic
-- `server.py` — WebSocket broadcast bridge on `ws://0.0.0.0:8765`
-- `nexus/morrowind_harness.py` — GamePortal/MCP harness for OpenMW Morrowind
-- `nexus/bannerlord_harness.py` — GamePortal/MCP harness for Bannerlord
-- `mempalace/tunnel_sync.py` — pulls remote fleet closets into the local palace over HTTP
-- `multi_user_bridge.py` — HTTP bridge for multi-user chat/session integration
-- `mcp_servers/desktop_control_server.py` — stdio MCP server exposing screenshots/mouse/keyboard control
+## Data Flow
 
-### Data flow
-
-1. Browser startup begins at `index.html`
-2. `boot.js` decides whether the page is being served correctly; in HTTP mode it injects `bootstrap.mjs`
-3. `bootstrap.mjs` hands off to `app.js`
-4. `app.js` loads world configuration from `portals.json` and `vision.json`
-5. `app.js` constructs the Three.js scene and in-browser reasoning components, including `SymbolicEngine`, `NeuroSymbolicBridge`, `setupGOFAI()`, and `updateGOFAI()`
-6. Browser state and external runtimes connect through `server.py`, which broadcasts messages between connected clients
-7. Python harnesses (`nexus/morrowind_harness.py`, `nexus/bannerlord_harness.py`) spawn MCP subprocesses for desktop control / Steam metadata, capture state, execute actions, and feed telemetry into the Nexus bridge
-8. Memory/fleet tools like `mempalace/tunnel_sync.py` import remote palace data into local closets, extending what the operator/runtime layers can inspect
-9. Tests validate both the static browser contract and the higher-level repo-truth/memory contracts
-
-### Important repo-specific runtime facts
-
-- `portals.json` is a JSON array of portal/world/operator entries; examples in this checkout include `morrowind`, `bannerlord`, `workshop`, `archive`, `chapel`, and `courtyard`
-- `server.py` is a plain broadcast hub: clients send messages, the server forwards them to other connected clients
-- `nexus/morrowind_harness.py` and `nexus/bannerlord_harness.py` both implement a GamePortal pattern with MCP subprocess clients over stdio and WebSocket telemetry uplink
-- `mempalace/tunnel_sync.py` is not speculative; it is a real client that discovers remote wings, searches remote rooms, and writes `.closet.json` payloads locally
+1. Operators enter through `codebase_genome.py`, `gemini-fallback-setup.sh`, `morrowind/hud.sh`.
+2. Core logic fans into top-level components: `angband`, `ansible`, `briefings`, `codebase_genome`, `config`, `configs`.
+3. Validation is incomplete around `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py`, `timmy-local/cache/agent_cache.py`, `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py`, so changes there carry regression risk.
+4. Final artifacts land as repository files, docs, or runtime side effects depending on the selected entry point.
 
 ## Key Abstractions
 
-### Browser runtime
-
-- `app.js`
-  - Defines in-browser reasoning/state machinery, including `class SymbolicEngine`, `class NeuroSymbolicBridge`, `setupGOFAI()`, and `updateGOFAI()`
-  - Couples rendering, local symbolic reasoning, metrics polling, and portal/UI logic in one very large root module
-- `BROWSER_CONTRACT.md`
-  - Acts like an executable architecture contract for the browser surface
-  - Declares required files, DOM IDs, Three.js expectations, provenance rules, and WebSocket expectations
-
-### Realtime bridge
-
-- `server.py`
-  - Single hub abstraction: a WebSocket broadcast server maintaining a `clients` set and forwarding messages from one client to the others
-  - This is the seam between browser shell, harnesses, and external telemetry producers
-
-### GamePortal harness layer
-
-- `nexus/morrowind_harness.py`
-- `nexus/bannerlord_harness.py`
-  - Both define MCP client wrappers, `GameState` / `ActionResult`-style data classes, and an Observe-Decide-Act telemetry loop
-  - The harnesses are symmetric enough to be understood as reusable portal adapters with game-specific context injected on top
-
-### Memory / fleet layer
-
-- `mempalace/tunnel_sync.py`
-  - Encodes the fleet-memory sync client contract: discover wings, pull broad room queries, write closet files, support dry-run
-- `mempalace.js`
-  - Minimal browser/Electron bridge to MemPalace commands via `window.electronAPI.execPython(...)`
-  - Important because it shows a second memory integration surface distinct from the Python fleet sync path
-
-### Operator / interaction bridge
-
-- `multi_user_bridge.py`
-- `commands/timmy_commands.py`
-  - These bridge user-facing conversations or MUD/Evennia interactions back into Timmy/Nexus services
+- `codebase_genome.py` — classes `FunctionInfo`:19; functions `extract_functions()`:58, `generate_test()`:116, `scan_repo()`:191, `find_existing_tests()`:209, `main()`:231
+- `evennia/timmy_world/game.py` — classes `World`:91, `ActionSystem`:421, `TimmyAI`:539, `NPCAI`:550; functions `get_narrative_phase()`:55, `get_phase_transition_event()`:65
+- `evennia/timmy_world/world/game.py` — classes `World`:19, `ActionSystem`:326, `TimmyAI`:444, `NPCAI`:455; functions none detected
+- `timmy-world/game.py` — classes `World`:19, `ActionSystem`:349, `TimmyAI`:467, `NPCAI`:478; functions none detected
+- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — classes none detected; functions none detected
+- `uniwizard/self_grader.py` — classes `SessionGrade`:23, `WeeklyReport`:55, `SelfGrader`:74; functions `main()`:713
+- `uni-wizard/v3/intelligence_engine.py` — classes `ExecutionPattern`:27, `ModelPerformance`:44, `AdaptationEvent`:58, `PatternDatabase`:69; functions none detected
+- `scripts/know_thy_father/crossref_audit.py` — classes `ThemeCategory`:30, `Principle`:160, `MeaningKernel`:169, `CrossRefFinding`:178; functions `extract_themes_from_text()`:192, `parse_soul_md()`:206, `parse_kernels()`:264, `cross_reference()`:296, `generate_report()`:440, `main()`:561
 
 ## API Surface
 
-### Browser / static surface
+- CLI: `python3 codebase_genome.py` — python main guard (`codebase_genome.py`)
+- CLI: `bash gemini-fallback-setup.sh` — operational script (`gemini-fallback-setup.sh`)
+- CLI: `bash morrowind/hud.sh` — operational script (`morrowind/hud.sh`)
+- CLI: `python3 pipelines/codebase_genome.py` — python main guard (`pipelines/codebase_genome.py`)
+- CLI: `python3 scripts/agent_pr_gate.py` — operational script (`scripts/agent_pr_gate.py`)
+- CLI: `python3 scripts/audit_trail.py` — operational script (`scripts/audit_trail.py`)
+- CLI: `bash scripts/auto_restart_agent.sh` — operational script (`scripts/auto_restart_agent.sh`)
+- CLI: `python3 scripts/autonomous_issue_creator.py` — operational script (`scripts/autonomous_issue_creator.py`)
+- Python: `extract_functions()` from `codebase_genome.py:58`
+- Python: `generate_test()` from `codebase_genome.py:116`
+- Python: `scan_repo()` from `codebase_genome.py:191`
+- Python: `find_existing_tests()` from `codebase_genome.py:209`
+- Python: `main()` from `codebase_genome.py:231`
+- Python: `get_narrative_phase()` from `evennia/timmy_world/game.py:55`
 
-- `index.html` served over HTTP
-- `boot.js` exports `bootPage()`; verified by `node --test tests/boot.test.js`
-- Data APIs are file-based inside the repo: `portals.json`, `vision.json`, `manifest.json`
+## Test Coverage Report
 
-### Network/runtime surface
+- Source and script files inspected: 231
+- Test files inspected: 95
+- Coverage gaps:
+  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — no matching test reference detected
+  - `timmy-local/cache/agent_cache.py` — no matching test reference detected
+  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py` — no matching test reference detected
+  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/godmode_race.py` — no matching test reference detected
+  - `skills/productivity/google-workspace/scripts/google_api.py` — no matching test reference detected
+  - `wizards/allegro/home/skills/productivity/google-workspace/scripts/google_api.py` — no matching test reference detected
+  - `morrowind/pilot.py` — no matching test reference detected
+  - `scripts/sovereignty_audit.py` — no matching test reference detected
+  - `skills/research/domain-intel/scripts/domain_intel.py` — no matching test reference detected
+  - `wizards/allegro/home/skills/research/domain-intel/scripts/domain_intel.py` — no matching test reference detected
+  - `timmy-local/scripts/ingest.py` — no matching test reference detected
+  - `uni-wizard/scripts/generate_scorecard.py` — no matching test reference detected
 
-- `python3 server.py`
-  - Starts the WebSocket bridge on port `8765`
-- `python3 l402_server.py`
-  - Local HTTP microservice for cost-estimate style responses
-- `python3 multi_user_bridge.py`
-  - Multi-user HTTP/chat bridge
+## Security Audit Findings
 
-### Harness / operator CLI surfaces
+- [medium] `briefings/briefing_20260325.json:37` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"gitea_error": "Gitea 404: {\"errors\":null,\"message\":\"not found\",\"url\":\"http://143.198.27.163:3000/api/swagger\"}\n [http://143.198.27.163:3000/api/v1/repos/Timmy_Foundation/sovereign-orchestration/issues?state=open&type=issues&sort=created&direction=desc&limit=1&page=1]",`
+- [medium] `briefings/briefing_20260328.json:11` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"provider_base_url": "http://localhost:8081/v1",`
+- [medium] `briefings/briefing_20260329.json:11` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"provider_base_url": "http://localhost:8081/v1",`
+- [medium] `config.yaml:37` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `summary_base_url: http://localhost:11434/v1`
+- [medium] `config.yaml:47` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:52` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:57` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:62` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:67` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:77` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:82` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
+- [medium] `config.yaml:174` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: http://localhost:11434/v1`
 
-- `python3 nexus/morrowind_harness.py`
-- `python3 nexus/bannerlord_harness.py`
-- `python3 mempalace/tunnel_sync.py --peer <url> [--dry-run] [--n N]`
-- `python3 mcp_servers/desktop_control_server.py`
-- `python3 mcp_servers/steam_info_server.py`
+## Dead Code Candidates
 
-### Validation surface
+- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — not imported by indexed Python modules and not referenced by tests
+- `timmy-local/cache/agent_cache.py` — not imported by indexed Python modules and not referenced by tests
+- `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py` — not imported by indexed Python modules and not referenced by tests
+- `wizards/allegro/home/skills/red-teaming/godmode/scripts/godmode_race.py` — not imported by indexed Python modules and not referenced by tests
+- `skills/productivity/google-workspace/scripts/google_api.py` — not imported by indexed Python modules and not referenced by tests
+- `wizards/allegro/home/skills/productivity/google-workspace/scripts/google_api.py` — not imported by indexed Python modules and not referenced by tests
+- `morrowind/pilot.py` — not imported by indexed Python modules and not referenced by tests
+- `scripts/sovereignty_audit.py` — not imported by indexed Python modules and not referenced by tests
+- `skills/research/domain-intel/scripts/domain_intel.py` — not imported by indexed Python modules and not referenced by tests
+- `wizards/allegro/home/skills/research/domain-intel/scripts/domain_intel.py` — not imported by indexed Python modules and not referenced by tests
 
-- `python3 -m pytest tests/test_portals_json.py tests/test_index_html_integrity.py tests/test_repo_truth.py -q`
-- `node --test tests/boot.test.js`
-- `python3 -m py_compile server.py nexus/morrowind_harness.py nexus/bannerlord_harness.py mempalace/tunnel_sync.py mcp_servers/desktop_control_server.py`
-- `tests/test_browser_smoke.py` defines the higher-cost Playwright smoke contract for the world shell
+## Performance Bottleneck Analysis
 
-## Test Coverage Gaps
-
-Strongly covered in this checkout:
-- `tests/test_portals_json.py` validates `portals.json`
-- `tests/test_index_html_integrity.py` checks merge-marker/DOM-integrity regressions in `index.html`
-- `tests/boot.test.js` verifies `boot.js` startup behavior
-- `tests/test_repo_truth.py` validates the repo-truth documents
-- Multiple `tests/test_mempalace_*.py` files cover the palace layer
-- `tests/test_bannerlord_harness.py` exists for the Bannerlord harness
-
-Notable gaps or weak seams:
-- `nexus/morrowind_harness.py` is large and operationally critical, but the generated baseline still flags it as a gap relative to its size/complexity
-- `mcp_servers/desktop_control_server.py` exposes high-power automation but has no obvious dedicated test file in the root `tests/` suite
-- `app.js` is the dominant browser runtime file and mixes rendering, GOFAI, metrics, and integration logic in one place; browser smoke exists, but there is limited unit-level decomposition around those subsystems
-- `mempalace.js` appears minimally bridged and stale relative to the richer Python MemPalace layer
-- `multi_user_bridge.py` is a large integration surface and should be treated as high regression risk even though it is central to operator/chat flow
-
-## Security Considerations
-
-- `server.py` binds `HOST = "0.0.0.0"`, exposing the broadcast bridge beyond localhost unless network controls limit it
-- The WebSocket bridge is a broadcast hub without visible authentication in `server.py`; connected clients are trusted to send messages into the bus
-- `mcp_servers/desktop_control_server.py` exposes mouse/keyboard/screenshot control through a stdio MCP server. In any non-local or poorly isolated runtime, this is a privileged automation surface
-- `app.js` contains hardcoded local/network endpoints such as `http://localhost:${L402_PORT}/api/cost-estimate` and `http://localhost:8082/metrics`; these are convenient for local development but create environment drift and deployment assumptions
-- `app.js` also embeds explicit endpoint/status references like `ws://143.198.27.163:8765`, which is operationally brittle and the kind of hardcoded location data that drifts across environments
-- `mempalace.js` shells out through `window.electronAPI.execPython(...)`; this is powerful and useful, but it is a clear trust boundary between UI and host execution
-- `INVESTIGATION_ISSUE_1145.md` documents an earlier integrity hazard: agents writing to `public/nexus/` instead of canonical root paths. That path confusion is both an operational and security concern because it makes provenance harder to reason about
-
-## Runtime Truth and Docs Drift
-
-The most important architecture finding in this repo is not a class or subsystem. It is a truth mismatch.
-
-- README.md says current `main` does not ship a browser 3D world
-- CLAUDE.md declares root `app.js` and `index.html` as canonical frontend paths
-- tests and browser contract now assume the root frontend exists
-
-All three statements are simultaneously present in this checkout.
-
-Grounded evidence:
-- `README.md` still says the repo does not contain an active root frontend such as `index.html`, `app.js`, or `style.css`
-- the current checkout does contain `index.html`, `app.js`, `style.css`, `manifest.json`, and `gofai_worker.js`
-- `BROWSER_CONTRACT.md` explicitly treats those root files as required browser assets
-- `tests/test_browser_smoke.py` serves those exact files and validates DOM/WebGL contracts against them
-- `tests/test_index_html_integrity.py` assumes `index.html` is canonical and production-relevant
-- `CLAUDE.md` says frontend code lives at repo root and explicitly warns against `public/nexus/`
-- `INVESTIGATION_ISSUE_1145.md` explains why `public/nexus/` is a bad/corrupt duplicate path and confirms the real classical AI code lives in root `app.js`
-
-The honest conclusion:
-- The repo contains a partially restored or actively re-materialized browser surface
-- The docs are preserving an older migration truth while the runtime files and smoke contracts describe a newer present-tense truth
-- Any future work in `the-nexus` must choose one truth and align `README.md`, `CLAUDE.md`, smoke tests, and file layout around it
-
-That drift is itself a critical architectural fact and should be treated as first-order design debt, not a side note.
+- `angband/mcp_server.py` — large module (353 lines) likely hides multiple responsibilities
+- `evennia/timmy_world/game.py` — large module (1541 lines) likely hides multiple responsibilities
+- `evennia/timmy_world/world/game.py` — large module (1345 lines) likely hides multiple responsibilities
+- `morrowind/mcp_server.py` — large module (451 lines) likely hides multiple responsibilities
+- `morrowind/pilot.py` — large module (459 lines) likely hides multiple responsibilities
+- `pipelines/codebase_genome.py` — large module (557 lines) likely hides multiple responsibilities
+- `scripts/fleet_progression.py` — large module (361 lines) likely hides multiple responsibilities
+- `scripts/know_thy_father/crossref_audit.py` — large module (657 lines) likely hides multiple responsibilities
+- `scripts/know_thy_father/index_media.py` — large module (405 lines) likely hides multiple responsibilities
+- `scripts/know_thy_father/synthesize_kernels.py` — large module (416 lines) likely hides multiple responsibilities

scripts/agent-dispatch.sh

@@ -1,111 +0,0 @@
-#!/bin/bash
-# ============================================================================
-# Agent Dispatch — One-shot prompt generator for fleet workers
-# ============================================================================
-# Refs: timmy-home #512
-#
-# Packages context, token, repo, issue, and Git/Gitea commands into a
-# copy-pasteable prompt for any agent (Claude, Sonnet, Kimi, Grok, etc.).
-#
-# Usage:
-#   scripts/agent-dispatch.sh <agent> <repo> <issue#> [<org>]
-#
-# Supported agents:
-#   sonnet, claude, kimi, grok, gemini, ezra, bezalel, allegro, timmy
-#
-# Example:
-#   scripts/agent-dispatch.sh sonnet the-nexus 844 Timmy_Foundation
-# ============================================================================
-
-set -euo pipefail
-
-AGENT="${1:-}"
-REPO="${2:-}"
-ISSUE="${3:-}"
-ORG="${4:-Timmy_Foundation}"
-
-TOKEN="${GITEA_TOKEN:-$(cat ~/.config/gitea/token 2>/dev/null || true)}"
-FORGE="https://forge.alexanderwhitestone.com"
-
-if [ -z "$AGENT" ] || [ -z "$REPO" ] || [ -z "$ISSUE" ]; then
-    echo "Usage: $0 <agent> <repo> <issue#> [<org>]"
-    echo ""
-    echo "Supported agents:"
-    echo "  sonnet    — Anthropic Claude Sonnet (cloud, high-reasoning)"
-    echo "  claude    — Anthropic Claude (general)"
-    echo "  kimi      — Moonshot Kimi K2.5 (cloud, long-context)"
-    echo "  grok      — xAI Grok (cloud, real-time)"
-    echo "  gemini    — Google Gemini (cloud, multimodal)"
-    echo "  ezra      — Local archivist house (read-before-write)"
-    echo "  bezalel   — Local artificer house (proof-required)"
-    echo "  allegro   — Local dispatch house (tempo-and-routing)"
-    echo "  timmy     — Local sovereign house (final review)"
-    exit 1
-fi
-
-# Validate agent
-VALID_AGENTS="sonnet claude kimi grok gemini ezra bezalel allegro timmy"
-if ! echo "$VALID_AGENTS" | grep -qw "$AGENT"; then
-    echo "ERROR: Unknown agent '$AGENT'"
-    echo "Valid agents: $VALID_AGENTS"
-    exit 1
-fi
-
-# Fetch issue details
-if [ -n "$TOKEN" ]; then
-    ISSUE_JSON=$(curl -s -H "Authorization: token ${TOKEN}" \
-        "${FORGE}/api/v1/repos/${ORG}/${REPO}/issues/${ISSUE}" 2>/dev/null || true)
-    ISSUE_TITLE=$(echo "$ISSUE_JSON" | python3 -c "import sys,json; d=json.load(sys.stdin); print(d.get('title',''))" 2>/dev/null || true)
-    ISSUE_BODY=$(echo "$ISSUE_JSON" | python3 -c "import sys,json; d=json.load(sys.stdin); print(d.get('body',''))" 2>/dev/null || true)
-else
-    echo "WARNING: No Gitea token found. Issue details will be blank."
-    ISSUE_TITLE=""
-    ISSUE_BODY=""
-fi
-
-cat <<EOF
-================================================================================
-  DISPATCH PROMPT — ${AGENT} → ${ORG}/${REPO}#${ISSUE}
-================================================================================
-
-Agent: ${AGENT}
-Repo:  ${ORG}/${REPO}
-Issue: #${ISSUE}
-Title: ${ISSUE_TITLE}
-
---- ISSUE BODY ---
-${ISSUE_BODY}
-
---- INSTRUCTIONS ---
-
-1. Clone the repo:
-   git clone --depth 1 "https://\${TOKEN}@forge.alexanderwhitestone.com/${ORG}/${REPO}.git"
-   cd ${REPO}
-
-2. Create branch:
-   git checkout -b ${AGENT}/${REPO}-${ISSUE}
-
-3. Read the issue, implement the fix or feature.
-
-4. Test your changes locally.
-
-5. Commit and push:
-   git add -A
-   git commit -m "[${AGENT}] ${ISSUE_TITLE} (#${ISSUE})"
-   git push origin ${AGENT}/${REPO}-${ISSUE}
-
-6. Open PR via Gitea API:
-   curl -X POST \\
-     -H "Authorization: token \${TOKEN}" \\
-     -H "Content-Type: application/json" \\
-     "${FORGE}/api/v1/repos/${ORG}/${REPO}/pulls" \\
-     -d '{"title":"[${AGENT}] ${ISSUE_TITLE}","head":"${AGENT}/${REPO}-${ISSUE}","base":"main","body":"Closes #${ISSUE}"}'
-
-7. File new issues for anything discovered.
-
-Token: \${GITEA_TOKEN} or ~/.config/gitea/token
-Forge: ${FORGE}
-
-Sovereignty and service always.
-================================================================================
-EOF

scripts/sonnet-smoke-test.sh

@@ -1,195 +0,0 @@
-#!/bin/bash
-# ============================================================================
-# Sonnet Workforce Smoke Test
-# ============================================================================
-# Refs: timmy-home #512
-#
-# Validates that the Sonnet workforce agent can perform the full
-# clone → code → commit → push → PR workflow via Gitea HTTP.
-#
-# Usage:
-#   scripts/sonnet-smoke-test.sh [--cleanup]
-#
-# Exit codes:
-#   0 — all checks passed
-#   1 — one or more checks failed
-# ============================================================================
-
-set -euo pipefail
-
-SCRIPT_DIR="$(cd "$(dirname "$0")" && pwd)"
-REPO_ROOT="$(cd "$SCRIPT_DIR/.." && pwd)"
-TOKEN="${GITEA_TOKEN:-$(cat ~/.config/gitea/token 2>/dev/null || true)}"
-FORGE="https://forge.alexanderwhitestone.com"
-ORG="Timmy_Foundation"
-REPO="timmy-home"
-TEST_BRANCH="smoke/sonnet-$(date +%s)"
-
-# Colors
-GREEN='\\033[0;32m'
-RED='\\033[0;31m'
-YELLOW='\\033[0;33m'
-NC='\\033[0m'
-
-PASS=0
-FAIL=0
-
-log_pass() { echo -e "${GREEN}✓${NC} $1"; PASS=$((PASS + 1)); }
-log_fail() { echo -e "${RED}✗${NC} $1"; FAIL=$((FAIL + 1)); }
-log_info() { echo -e "${YELLOW}▶${NC} $1"; }
-
-# ── Prerequisites ──────────────────────────────────────────────────────────────────────────────────────
-
-log_info "Checking prerequisites..."
-
-if [ -z "$TOKEN" ]; then
-    log_fail "Gitea token not found (checked GITEA_TOKEN env and ~/.config/gitea/token)"
-    exit 1
-fi
-
-if ! command -v git &>/dev/null; then
-    log_fail "git not installed"
-    exit 1
-fi
-
-if ! command -v curl &>/dev/null; then
-    log_fail "curl not installed"
-    exit 1
-fi
-
-if ! command -v python3 &>/dev/null; then
-    log_fail "python3 not installed"
-    exit 1
-fi
-
-log_pass "Prerequisites OK"
-
-# ── 1. Clone via Gitea HTTP ───────────────────────────────────────────────────────────────────────────────────────────────────────
-
-log_info "Step 1: Clone repo via Gitea HTTP..."
-
-TMPDIR=$(mktemp -d)
-CLONE_URL="${FORGE}/${ORG}/${REPO}.git"
-
-cd "$TMPDIR"
-if git clone --depth 1 "https://${TOKEN}@${FORGE#https://}/${ORG}/${REPO}.git" smoke-clone 2>/dev/null; then
-    log_pass "Clone via Gitea HTTP"
-else
-    log_fail "Clone via Gitea HTTP"
-    rm -rf "$TMPDIR"
-    exit 1
-fi
-
-# ── 2. Commit ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
-
-log_info "Step 2: Create branch and commit..."
-
-cd "$TMPDIR/smoke-clone"
-git checkout -b "$TEST_BRANCH" 2>/dev/null || true
-
-# Make a harmless change
-printf "# Sonnet smoke test marker\\n# timestamp: %s\\n" "$(date -u +%Y-%m-%dT%H:%M:%SZ)" > SONNET_SMOKE_MARKER.md
-git add SONNET_SMOKE_MARKER.md
-
-if git -c user.email="sonnet@timmy.local" -c user.name="Sonnet Smoke Test" \
-   commit -m "test: sonnet smoke test marker" 2>/dev/null; then
-    log_pass "Commit created"
-else
-    log_fail "Commit failed"
-    rm -rf "$TMPDIR"
-    exit 1
-fi
-
-# ── 3. Push ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
-
-log_info "Step 3: Push branch..."
-
-if git push origin "$TEST_BRANCH" 2>/dev/null; then
-    log_pass "Push to origin"
-else
-    log_fail "Push to origin"
-    rm -rf "$TMPDIR"
-    exit 1
-fi
-
-# ── 4. Create PR ───────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
-
-log_info "Step 4: Create PR via Gitea API..."
-
-PR_RESPONSE=$(curl -s -X POST \
-    -H "Authorization: token ${TOKEN}" \
-    -H "Content-Type: application/json" \
-    "${FORGE}/api/v1/repos/${ORG}/${REPO}/pulls" \
-    -d "{
-      \"title\": \"test: sonnet smoke test ${TEST_BRANCH}\",
-      \"head\": \"${TEST_BRANCH}\",
-      \"base\": \"main\",
-      \"body\": \"Automated smoke test verifying Sonnet can clone, commit, push, and open a PR.\\n\\nRefs #512\"
-    }" 2>/dev/null)
-
-PR_NUMBER=$(echo "$PR_RESPONSE" | python3 -c "import sys,json; d=json.load(sys.stdin); print(d.get('number',''))")
-
-if [ -n "$PR_NUMBER" ] && [ "$PR_NUMBER" != "None" ]; then
-    log_pass "PR created (#${PR_NUMBER})"
-    PR_URL="${FORGE}/${ORG}/${REPO}/pulls/${PR_NUMBER}"
-    echo "  URL: $PR_URL"
-else
-    log_fail "PR creation failed"
-    echo "  Response: $PR_RESPONSE"
-    rm -rf "$TMPDIR"
-    exit 1
-fi
-
-# ── 5. Verify PR exists ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
-
-log_info "Step 5: Verify PR exists via API..."
-
-PR_CHECK=$(curl -s -H "Authorization: token ${TOKEN}" \
-    "${FORGE}/api/v1/repos/${ORG}/${REPO}/pulls/${PR_NUMBER}" 2>/dev/null)
-
-PR_STATE=$(echo "$PR_CHECK" | python3 -c "import sys,json; d=json.load(sys.stdin); print(d.get('state',''))")
-
-if [ "$PR_STATE" = "open" ]; then
-    log_pass "PR verified open via API"
-else
-    log_fail "PR state is '$PR_STATE', expected 'open'"
-fi
-
-# ── Cleanup (optional) ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
-
-if [ "${1:-}" = "--cleanup" ]; then
-    log_info "Cleaning up smoke test artifacts..."
-    curl -s -X PATCH -H "Authorization: token ${TOKEN}" \
-        -H "Content-Type: application/json" \
-        "${FORGE}/api/v1/repos/${ORG}/${REPO}/pulls/${PR_NUMBER}" \
-        -d '{"state":"closed"}' >/dev/null 2>&1 || true
-    git push origin --delete "$TEST_BRANCH" 2>/dev/null || true
-    log_pass "Cleanup complete"
-fi
-
-rm -rf "$TMPDIR"
-
-# ── Summary ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
-
-echo ""
-echo "================================================================"
-echo "  Sonnet Smoke Test Summary"
-echo "================================================================"
-echo -e "  Passed: ${GREEN}${PASS}${NC}"
-echo -e "  Failed: ${RED}${FAIL}${NC}"
-echo ""
-
-if [ "$FAIL" -gt 0 ]; then
-    echo -e "${RED}RESULT: FAILED${NC}"
-    exit 1
-else
-    echo -e "${GREEN}RESULT: PASSED${NC}"
-    echo ""
-    echo "Sonnet workforce is verified end-to-end:"
-    echo "  ✓ Clone via Gitea HTTP"
-    echo "  ✓ Branch + commit"
-    echo "  ✓ Push to origin"
-    echo "  ✓ Open PR via API"
-    echo "  ✓ Verify PR state"
-    exit 0
-fi

uni-wizard/v4/uni_wizard/__init__.py

@@ -38,7 +38,6 @@ class House(Enum):
     EZRA = "ezra"        # Archivist, reader
     BEZALEL = "bezalel"  # Artificer, builder
     ALLEGRO = "allegro"  # Tempo-and-dispatch, connected
-    SONNET = "sonnet"    # Anthropic Claude Sonnet (cloud, high-reasoning)
 
 
 class Mode(Enum):