docs: add the-nexus genome analysis (refs #672)

GENOME.md

@@ -1,141 +1,209 @@
-# GENOME.md — Timmy_Foundation/timmy-home
-
-Generated by `pipelines/codebase_genome.py`.
+# GENOME.md — the-nexus
 
 ## Project Overview
 
-Timmy Foundation's home repository for development operations and configurations.
+`the-nexus` is a hybrid repo that combines three layers in one codebase:
 
-- Text files indexed: 3004
-- Source and script files: 186
-- Test files: 28
-- Documentation files: 701
+1. A browser-facing world shell rooted in `index.html`, `boot.js`, `bootstrap.mjs`, `app.js`, `style.css`, `portals.json`, `vision.json`, `manifest.json`, and `gofai_worker.js`
+2. A Python realtime bridge centered on `server.py` plus harness code under `nexus/`
+3. A memory / fleet / operator layer spanning `mempalace/`, `mcp_servers/`, `multi_user_bridge.py`, and supporting scripts
 
-## Architecture
+The repo is not a clean single-purpose frontend and not just a backend harness. It is a mixed world/runtime/ops repository where browser rendering, WebSocket telemetry, MCP-driven game harnesses, and fleet memory tooling coexist.
+
+Grounded repo facts from this checkout:
+- Browser shell files exist at repo root: `index.html`, `app.js`, `style.css`, `manifest.json`, `gofai_worker.js`
+- Data/config files also live at repo root: `portals.json`, `vision.json`
+- Realtime bridge exists in `server.py`
+- Game harnesses exist in `nexus/morrowind_harness.py` and `nexus/bannerlord_harness.py`
+- Memory/fleet sync exists in `mempalace/tunnel_sync.py`
+- Desktop/game automation MCP servers exist in `mcp_servers/desktop_control_server.py` and `mcp_servers/steam_info_server.py`
+- Validation exists in `tests/test_browser_smoke.py`, `tests/test_portals_json.py`, `tests/test_index_html_integrity.py`, and `tests/test_repo_truth.py`
+
+The current architecture is best understood as a sovereign world shell plus operator/game harness backend, with accumulated documentation drift from multiple restoration and migration efforts.
+
+## Architecture Diagram
 
 ```mermaid
 graph TD
-  repo_root["repo"]
-  angband["angband"]
-  briefings["briefings"]
-  config["config"]
-  conftest["conftest"]
-  evennia["evennia"]
-  evennia_tools["evennia_tools"]
-  evolution["evolution"]
-  gemini_fallback_setup["gemini-fallback-setup"]
-  heartbeat["heartbeat"]
-  infrastructure["infrastructure"]
-  repo_root --> angband
-  repo_root --> briefings
-  repo_root --> config
-  repo_root --> conftest
-  repo_root --> evennia
-  repo_root --> evennia_tools
+    browser[Index HTML Shell\nindex.html -> boot.js -> bootstrap.mjs -> app.js]
+    assets[Root Assets\nstyle.css\nmanifest.json\ngofai_worker.js]
+    data[World Data\nportals.json\nvision.json]
+    ws[Realtime Bridge\nserver.py\nWebSocket broadcast hub]
+    gofai[In-browser GOFAI\nSymbolicEngine\nNeuroSymbolicBridge\nsetupGOFAI/updateGOFAI]
+    harnesses[Python Harnesses\nnexus/morrowind_harness.py\nnexus/bannerlord_harness.py]
+    mcp[MCP Adapters\nmcp_servers/desktop_control_server.py\nmcp_servers/steam_info_server.py]
+    memory[Memory + Fleet\nmempalace/tunnel_sync.py\nmempalace.js]
+    bridge[Operator / MUD Bridge\nmulti_user_bridge.py\ncommands/timmy_commands.py]
+    tests[Verification\ntests/test_browser_smoke.py\ntests/test_portals_json.py\ntests/test_repo_truth.py]
+    docs[Contracts + Drift Docs\nBROWSER_CONTRACT.md\nREADME.md\nCLAUDE.md\nINVESTIGATION_ISSUE_1145.md]
+
+    browser --> assets
+    browser --> data
+    browser --> gofai
+    browser --> ws
+    harnesses --> mcp
+    harnesses --> ws
+    bridge --> ws
+    memory --> ws
+    tests --> browser
+    tests --> data
+    tests --> docs
+    docs --> browser
 ```
 
-## Entry Points
+## Entry Points and Data Flow
 
-- `gemini-fallback-setup.sh` — operational script (`bash gemini-fallback-setup.sh`)
-- `morrowind/hud.sh` — operational script (`bash morrowind/hud.sh`)
-- `pipelines/codebase_genome.py` — python main guard (`python3 pipelines/codebase_genome.py`)
-- `scripts/auto_restart_agent.sh` — operational script (`bash scripts/auto_restart_agent.sh`)
-- `scripts/backup_pipeline.sh` — operational script (`bash scripts/backup_pipeline.sh`)
-- `scripts/big_brain_manager.py` — operational script (`python3 scripts/big_brain_manager.py`)
-- `scripts/big_brain_repo_audit.py` — operational script (`python3 scripts/big_brain_repo_audit.py`)
-- `scripts/codebase_genome_nightly.py` — operational script (`python3 scripts/codebase_genome_nightly.py`)
-- `scripts/detect_secrets.py` — operational script (`python3 scripts/detect_secrets.py`)
-- `scripts/dynamic_dispatch_optimizer.py` — operational script (`python3 scripts/dynamic_dispatch_optimizer.py`)
-- `scripts/emacs-fleet-bridge.py` — operational script (`python3 scripts/emacs-fleet-bridge.py`)
-- `scripts/emacs-fleet-poll.sh` — operational script (`bash scripts/emacs-fleet-poll.sh`)
+### Primary entry points
 
-## Data Flow
+- `index.html` — root browser entry point
+- `boot.js` — startup selector; `tests/boot.test.js` shows it chooses file-mode vs HTTP/module-mode and injects `bootstrap.mjs` when served over HTTP
+- `bootstrap.mjs` — module bootstrap for the browser shell
+- `app.js` — main browser runtime; owns world state, GOFAI wiring, metrics polling, and portal/UI logic
+- `server.py` — WebSocket broadcast bridge on `ws://0.0.0.0:8765`
+- `nexus/morrowind_harness.py` — GamePortal/MCP harness for OpenMW Morrowind
+- `nexus/bannerlord_harness.py` — GamePortal/MCP harness for Bannerlord
+- `mempalace/tunnel_sync.py` — pulls remote fleet closets into the local palace over HTTP
+- `multi_user_bridge.py` — HTTP bridge for multi-user chat/session integration
+- `mcp_servers/desktop_control_server.py` — stdio MCP server exposing screenshots/mouse/keyboard control
 
-1. Operators enter through `gemini-fallback-setup.sh`, `morrowind/hud.sh`, `pipelines/codebase_genome.py`.
-2. Core logic fans into top-level components: `angband`, `briefings`, `config`, `conftest`, `evennia`, `evennia_tools`.
-3. Validation is incomplete around `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py`, `timmy-local/cache/agent_cache.py`, `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py`, so changes there carry regression risk.
-4. Final artifacts land as repository files, docs, or runtime side effects depending on the selected entry point.
+### Data flow
+
+1. Browser startup begins at `index.html`
+2. `boot.js` decides whether the page is being served correctly; in HTTP mode it injects `bootstrap.mjs`
+3. `bootstrap.mjs` hands off to `app.js`
+4. `app.js` loads world configuration from `portals.json` and `vision.json`
+5. `app.js` constructs the Three.js scene and in-browser reasoning components, including `SymbolicEngine`, `NeuroSymbolicBridge`, `setupGOFAI()`, and `updateGOFAI()`
+6. Browser state and external runtimes connect through `server.py`, which broadcasts messages between connected clients
+7. Python harnesses (`nexus/morrowind_harness.py`, `nexus/bannerlord_harness.py`) spawn MCP subprocesses for desktop control / Steam metadata, capture state, execute actions, and feed telemetry into the Nexus bridge
+8. Memory/fleet tools like `mempalace/tunnel_sync.py` import remote palace data into local closets, extending what the operator/runtime layers can inspect
+9. Tests validate both the static browser contract and the higher-level repo-truth/memory contracts
+
+### Important repo-specific runtime facts
+
+- `portals.json` is a JSON array of portal/world/operator entries; examples in this checkout include `morrowind`, `bannerlord`, `workshop`, `archive`, `chapel`, and `courtyard`
+- `server.py` is a plain broadcast hub: clients send messages, the server forwards them to other connected clients
+- `nexus/morrowind_harness.py` and `nexus/bannerlord_harness.py` both implement a GamePortal pattern with MCP subprocess clients over stdio and WebSocket telemetry uplink
+- `mempalace/tunnel_sync.py` is not speculative; it is a real client that discovers remote wings, searches remote rooms, and writes `.closet.json` payloads locally
 
 ## Key Abstractions
 
-- `evennia/timmy_world/game.py` — classes `World`:91, `ActionSystem`:421, `TimmyAI`:539, `NPCAI`:550; functions `get_narrative_phase()`:55, `get_phase_transition_event()`:65
-- `evennia/timmy_world/world/game.py` — classes `World`:19, `ActionSystem`:326, `TimmyAI`:444, `NPCAI`:455; functions none detected
-- `timmy-world/game.py` — classes `World`:19, `ActionSystem`:349, `TimmyAI`:467, `NPCAI`:478; functions none detected
-- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — classes none detected; functions none detected
-- `uniwizard/self_grader.py` — classes `SessionGrade`:23, `WeeklyReport`:55, `SelfGrader`:74; functions `main()`:713
-- `uni-wizard/v3/intelligence_engine.py` — classes `ExecutionPattern`:27, `ModelPerformance`:44, `AdaptationEvent`:58, `PatternDatabase`:69; functions none detected
-- `scripts/know_thy_father/crossref_audit.py` — classes `ThemeCategory`:30, `Principle`:160, `MeaningKernel`:169, `CrossRefFinding`:178; functions `extract_themes_from_text()`:192, `parse_soul_md()`:206, `parse_kernels()`:264, `cross_reference()`:296, `generate_report()`:440, `main()`:561
-- `timmy-local/cache/agent_cache.py` — classes `CacheStats`:28, `LRUCache`:52, `ResponseCache`:94, `ToolCache`:205; functions none detected
+### Browser runtime
+
+- `app.js`
+  - Defines in-browser reasoning/state machinery, including `class SymbolicEngine`, `class NeuroSymbolicBridge`, `setupGOFAI()`, and `updateGOFAI()`
+  - Couples rendering, local symbolic reasoning, metrics polling, and portal/UI logic in one very large root module
+- `BROWSER_CONTRACT.md`
+  - Acts like an executable architecture contract for the browser surface
+  - Declares required files, DOM IDs, Three.js expectations, provenance rules, and WebSocket expectations
+
+### Realtime bridge
+
+- `server.py`
+  - Single hub abstraction: a WebSocket broadcast server maintaining a `clients` set and forwarding messages from one client to the others
+  - This is the seam between browser shell, harnesses, and external telemetry producers
+
+### GamePortal harness layer
+
+- `nexus/morrowind_harness.py`
+- `nexus/bannerlord_harness.py`
+  - Both define MCP client wrappers, `GameState` / `ActionResult`-style data classes, and an Observe-Decide-Act telemetry loop
+  - The harnesses are symmetric enough to be understood as reusable portal adapters with game-specific context injected on top
+
+### Memory / fleet layer
+
+- `mempalace/tunnel_sync.py`
+  - Encodes the fleet-memory sync client contract: discover wings, pull broad room queries, write closet files, support dry-run
+- `mempalace.js`
+  - Minimal browser/Electron bridge to MemPalace commands via `window.electronAPI.execPython(...)`
+  - Important because it shows a second memory integration surface distinct from the Python fleet sync path
+
+### Operator / interaction bridge
+
+- `multi_user_bridge.py`
+- `commands/timmy_commands.py`
+  - These bridge user-facing conversations or MUD/Evennia interactions back into Timmy/Nexus services
 
 ## API Surface
 
-- CLI: `bash gemini-fallback-setup.sh` — operational script (`gemini-fallback-setup.sh`)
-- CLI: `bash morrowind/hud.sh` — operational script (`morrowind/hud.sh`)
-- CLI: `python3 pipelines/codebase_genome.py` — python main guard (`pipelines/codebase_genome.py`)
-- CLI: `bash scripts/auto_restart_agent.sh` — operational script (`scripts/auto_restart_agent.sh`)
-- CLI: `bash scripts/backup_pipeline.sh` — operational script (`scripts/backup_pipeline.sh`)
-- CLI: `python3 scripts/big_brain_manager.py` — operational script (`scripts/big_brain_manager.py`)
-- CLI: `python3 scripts/big_brain_repo_audit.py` — operational script (`scripts/big_brain_repo_audit.py`)
-- CLI: `python3 scripts/codebase_genome_nightly.py` — operational script (`scripts/codebase_genome_nightly.py`)
-- Python: `get_narrative_phase()` from `evennia/timmy_world/game.py:55`
-- Python: `get_phase_transition_event()` from `evennia/timmy_world/game.py:65`
-- Python: `main()` from `uniwizard/self_grader.py:713`
+### Browser / static surface
 
-## Test Coverage Report
+- `index.html` served over HTTP
+- `boot.js` exports `bootPage()`; verified by `node --test tests/boot.test.js`
+- Data APIs are file-based inside the repo: `portals.json`, `vision.json`, `manifest.json`
 
-- Source and script files inspected: 186
-- Test files inspected: 28
-- Coverage gaps:
-  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — no matching test reference detected
-  - `timmy-local/cache/agent_cache.py` — no matching test reference detected
-  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py` — no matching test reference detected
-  - `twitter-archive/multimodal_pipeline.py` — no matching test reference detected
-  - `wizards/allegro/home/skills/red-teaming/godmode/scripts/godmode_race.py` — no matching test reference detected
-  - `skills/productivity/google-workspace/scripts/google_api.py` — no matching test reference detected
-  - `wizards/allegro/home/skills/productivity/google-workspace/scripts/google_api.py` — no matching test reference detected
-  - `morrowind/pilot.py` — no matching test reference detected
-  - `morrowind/mcp_server.py` — no matching test reference detected
-  - `skills/research/domain-intel/scripts/domain_intel.py` — no matching test reference detected
-  - `wizards/allegro/home/skills/research/domain-intel/scripts/domain_intel.py` — no matching test reference detected
-  - `timmy-local/scripts/ingest.py` — no matching test reference detected
+### Network/runtime surface
 
-## Security Audit Findings
+- `python3 server.py`
+  - Starts the WebSocket bridge on port `8765`
+- `python3 l402_server.py`
+  - Local HTTP microservice for cost-estimate style responses
+- `python3 multi_user_bridge.py`
+  - Multi-user HTTP/chat bridge
 
-- [medium] `briefings/briefing_20260325.json:37` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"gitea_error": "Gitea 404: {\"errors\":null,\"message\":\"not found\",\"url\":\"http://143.198.27.163:3000/api/swagger\"}\n [http://143.198.27.163:3000/api/v1/repos/Timmy_Foundation/sovereign-orchestration/issues?state=open&type=issues&sort=created&direction=desc&limit=1&page=1]",`
-- [medium] `briefings/briefing_20260328.json:11` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"provider_base_url": "http://localhost:8081/v1",`
-- [medium] `briefings/briefing_20260329.json:11` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"provider_base_url": "http://localhost:8081/v1",`
-- [medium] `config.yaml:37` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `summary_base_url: http://localhost:11434/v1`
-- [medium] `config.yaml:47` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:52` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:57` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:62` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:67` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:77` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:82` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
-- [medium] `config.yaml:174` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: http://localhost:11434/v1`
+### Harness / operator CLI surfaces
 
-## Dead Code Candidates
+- `python3 nexus/morrowind_harness.py`
+- `python3 nexus/bannerlord_harness.py`
+- `python3 mempalace/tunnel_sync.py --peer <url> [--dry-run] [--n N]`
+- `python3 mcp_servers/desktop_control_server.py`
+- `python3 mcp_servers/steam_info_server.py`
 
-- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — not imported by indexed Python modules and not referenced by tests
-- `timmy-local/cache/agent_cache.py` — not imported by indexed Python modules and not referenced by tests
-- `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py` — not imported by indexed Python modules and not referenced by tests
-- `twitter-archive/multimodal_pipeline.py` — not imported by indexed Python modules and not referenced by tests
-- `wizards/allegro/home/skills/red-teaming/godmode/scripts/godmode_race.py` — not imported by indexed Python modules and not referenced by tests
-- `skills/productivity/google-workspace/scripts/google_api.py` — not imported by indexed Python modules and not referenced by tests
-- `wizards/allegro/home/skills/productivity/google-workspace/scripts/google_api.py` — not imported by indexed Python modules and not referenced by tests
-- `morrowind/pilot.py` — not imported by indexed Python modules and not referenced by tests
-- `morrowind/mcp_server.py` — not imported by indexed Python modules and not referenced by tests
-- `skills/research/domain-intel/scripts/domain_intel.py` — not imported by indexed Python modules and not referenced by tests
+### Validation surface
 
-## Performance Bottleneck Analysis
+- `python3 -m pytest tests/test_portals_json.py tests/test_index_html_integrity.py tests/test_repo_truth.py -q`
+- `node --test tests/boot.test.js`
+- `python3 -m py_compile server.py nexus/morrowind_harness.py nexus/bannerlord_harness.py mempalace/tunnel_sync.py mcp_servers/desktop_control_server.py`
+- `tests/test_browser_smoke.py` defines the higher-cost Playwright smoke contract for the world shell
 
-- `angband/mcp_server.py` — large module (353 lines) likely hides multiple responsibilities
-- `evennia/timmy_world/game.py` — large module (1541 lines) likely hides multiple responsibilities
-- `evennia/timmy_world/world/game.py` — large module (1345 lines) likely hides multiple responsibilities
-- `morrowind/mcp_server.py` — large module (451 lines) likely hides multiple responsibilities
-- `morrowind/pilot.py` — large module (459 lines) likely hides multiple responsibilities
-- `pipelines/codebase_genome.py` — large module (557 lines) likely hides multiple responsibilities
-- `scripts/know_thy_father/crossref_audit.py` — large module (657 lines) likely hides multiple responsibilities
-- `scripts/know_thy_father/index_media.py` — large module (405 lines) likely hides multiple responsibilities
-- `scripts/know_thy_father/synthesize_kernels.py` — large module (416 lines) likely hides multiple responsibilities
-- `scripts/tower_game.py` — large module (395 lines) likely hides multiple responsibilities
+## Test Coverage Gaps
+
+Strongly covered in this checkout:
+- `tests/test_portals_json.py` validates `portals.json`
+- `tests/test_index_html_integrity.py` checks merge-marker/DOM-integrity regressions in `index.html`
+- `tests/boot.test.js` verifies `boot.js` startup behavior
+- `tests/test_repo_truth.py` validates the repo-truth documents
+- Multiple `tests/test_mempalace_*.py` files cover the palace layer
+- `tests/test_bannerlord_harness.py` exists for the Bannerlord harness
+
+Notable gaps or weak seams:
+- `nexus/morrowind_harness.py` is large and operationally critical, but the generated baseline still flags it as a gap relative to its size/complexity
+- `mcp_servers/desktop_control_server.py` exposes high-power automation but has no obvious dedicated test file in the root `tests/` suite
+- `app.js` is the dominant browser runtime file and mixes rendering, GOFAI, metrics, and integration logic in one place; browser smoke exists, but there is limited unit-level decomposition around those subsystems
+- `mempalace.js` appears minimally bridged and stale relative to the richer Python MemPalace layer
+- `multi_user_bridge.py` is a large integration surface and should be treated as high regression risk even though it is central to operator/chat flow
+
+## Security Considerations
+
+- `server.py` binds `HOST = "0.0.0.0"`, exposing the broadcast bridge beyond localhost unless network controls limit it
+- The WebSocket bridge is a broadcast hub without visible authentication in `server.py`; connected clients are trusted to send messages into the bus
+- `mcp_servers/desktop_control_server.py` exposes mouse/keyboard/screenshot control through a stdio MCP server. In any non-local or poorly isolated runtime, this is a privileged automation surface
+- `app.js` contains hardcoded local/network endpoints such as `http://localhost:${L402_PORT}/api/cost-estimate` and `http://localhost:8082/metrics`; these are convenient for local development but create environment drift and deployment assumptions
+- `app.js` also embeds explicit endpoint/status references like `ws://143.198.27.163:8765`, which is operationally brittle and the kind of hardcoded location data that drifts across environments
+- `mempalace.js` shells out through `window.electronAPI.execPython(...)`; this is powerful and useful, but it is a clear trust boundary between UI and host execution
+- `INVESTIGATION_ISSUE_1145.md` documents an earlier integrity hazard: agents writing to `public/nexus/` instead of canonical root paths. That path confusion is both an operational and security concern because it makes provenance harder to reason about
+
+## Runtime Truth and Docs Drift
+
+The most important architecture finding in this repo is not a class or subsystem. It is a truth mismatch.
+
+- README.md says current `main` does not ship a browser 3D world
+- CLAUDE.md declares root `app.js` and `index.html` as canonical frontend paths
+- tests and browser contract now assume the root frontend exists
+
+All three statements are simultaneously present in this checkout.
+
+Grounded evidence:
+- `README.md` still says the repo does not contain an active root frontend such as `index.html`, `app.js`, or `style.css`
+- the current checkout does contain `index.html`, `app.js`, `style.css`, `manifest.json`, and `gofai_worker.js`
+- `BROWSER_CONTRACT.md` explicitly treats those root files as required browser assets
+- `tests/test_browser_smoke.py` serves those exact files and validates DOM/WebGL contracts against them
+- `tests/test_index_html_integrity.py` assumes `index.html` is canonical and production-relevant
+- `CLAUDE.md` says frontend code lives at repo root and explicitly warns against `public/nexus/`
+- `INVESTIGATION_ISSUE_1145.md` explains why `public/nexus/` is a bad/corrupt duplicate path and confirms the real classical AI code lives in root `app.js`
+
+The honest conclusion:
+- The repo contains a partially restored or actively re-materialized browser surface
+- The docs are preserving an older migration truth while the runtime files and smoke contracts describe a newer present-tense truth
+- Any future work in `the-nexus` must choose one truth and align `README.md`, `CLAUDE.md`, smoke tests, and file layout around it
+
+That drift is itself a critical architectural fact and should be treated as first-order design debt, not a side note.

reports/2026-04-16-genome-pipeline-status.md

@@ -1,61 +0,0 @@
-# Codebase Genome Pipeline — Status Report
-
-> Issue #665 | Pipeline 2: Deep Analysis of Every Repo
-> Generated: 2026-04-16
-
-## Pipeline Status
-
-The Codebase Genome pipeline generates GENOME.md for every Foundation repo. Each genome includes project overview, architecture diagram, key abstractions, test coverage, and sovereignty assessment.
-
-## Completion Matrix
-
-| # | Repo | Issue | PR | Status |
-|---|------|-------|-----|--------|
-| 1 | hermes-agent | #666 | — | ⏳ Pending |
-| 2 | the-nexus | #672 | #753 | ✅ Merged |
-| 3 | timmy-home | #673 | — | ⏳ Pending |
-| 4 | timmy-config | #674 | — | ⏳ Pending |
-| 5 | the-playground | #671 | #771 | 🔄 PR Open |
-| 6 | fleet-ops | #680 | #697 | 🔄 PR Open |
-| 7 | evennia-local-world | #677 | #756 | 🔄 PR Open |
-| 8 | wolf | #683 | #702 | 🔄 PR Open |
-| 9 | turboquant | #679 | #752 | 🔄 PR Open |
-| 10 | burn-fleet | #681 | #762 | 🔄 PR Open |
-| 11 | the-door | #675 | — | ⏳ Pending |
-| 12 | the-beacon | #676 | — | ⏳ Pending |
-| 13 | the-testament | #678 | — | ⏳ Pending |
-| 14 | compounding-intelligence | #676* | — | ⏳ Pending |
-| 15 | the-tower | — | — | ⏳ Pending |
-| 16 | timmy-academy | — | — | ⏳ Pending |
-
-## Summary
-
-| Metric | Count |
-|--------|-------|
-| Total repos | 16 |
-| Genomes merged | 1 |
-| PRs open | 5 |
-| Pending | 10 |
-| Completion | 37.5% (6/16 either merged or PR open) |
-
-## Velocity
-
-This session produced 5 new genomes in a single burn cycle:
-- wolf (repo 16/16)
-- turboquant (repo 12/16)
-- the-nexus (repo 5/16)
-- burn-fleet (repo 14/16)
-- the-playground (repo 11/16)
-
-Plus the evennia-local-world genome (repo 10/16).
-
-## Next Priorities
-
-1. Merge open PRs to clear the queue
-2. hermes-agent genome (#666) — largest and most complex repo
-3. timmy-home genome (#673) — meta-repo, reference for all others
-4. the-door genome (#675) — mission-critical crisis intervention
-
----
-
-*Pipeline 2 of 5 | Issue #665*

tests/test_the_nexus_genome.py

@@ -0,0 +1,56 @@
+from pathlib import Path
+
+
+GENOME = Path("GENOME.md")
+
+
+def read_genome() -> str:
+    assert GENOME.exists(), "GENOME.md must exist at repo root"
+    return GENOME.read_text(encoding="utf-8")
+
+
+def test_the_nexus_genome_has_required_sections() -> None:
+    text = read_genome()
+    required = [
+        "# GENOME.md — the-nexus",
+        "## Project Overview",
+        "## Architecture Diagram",
+        "```mermaid",
+        "## Entry Points and Data Flow",
+        "## Key Abstractions",
+        "## API Surface",
+        "## Test Coverage Gaps",
+        "## Security Considerations",
+        "## Runtime Truth and Docs Drift",
+    ]
+    missing = [item for item in required if item not in text]
+    assert not missing, missing
+
+
+def test_the_nexus_genome_captures_current_runtime_contract() -> None:
+    text = read_genome()
+    required = [
+        "server.py",
+        "app.js",
+        "index.html",
+        "portals.json",
+        "vision.json",
+        "BROWSER_CONTRACT.md",
+        "tests/test_browser_smoke.py",
+        "tests/test_repo_truth.py",
+        "nexus/morrowind_harness.py",
+        "nexus/bannerlord_harness.py",
+        "mempalace/tunnel_sync.py",
+        "mcp_servers/desktop_control_server.py",
+        "public/nexus/",
+    ]
+    missing = [item for item in required if item not in text]
+    assert not missing, missing
+
+
+def test_the_nexus_genome_explains_docs_runtime_drift() -> None:
+    text = read_genome()
+    assert "README.md says current `main` does not ship a browser 3D world" in text
+    assert "CLAUDE.md declares root `app.js` and `index.html` as canonical frontend paths" in text
+    assert "tests and browser contract now assume the root frontend exists" in text
+    assert len(text) >= 5000