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Alexander Whitestone
1d2fbc747b docs: verify grounded slice for #545
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2026-04-16 23:57:26 -04:00
Alexander Whitestone
5ad0adee65 test: define verification evidence for #545 2026-04-16 23:56:06 -04:00
37a08f45b8 Merge pull request 'docs: MemPalace v3.0.0 integration — before/after evaluation (#568)' (#764) from fix/568-mempalace-evaluation into main
Merge PR #764: docs: MemPalace v3.0.0 integration — before/after evaluation (#568)
2026-04-17 01:46:41 +00:00
9c420127be Merge pull request 'docs: add the-nexus genome analysis (#672)' (#763) from fix/672 into main
Merge PR #763: docs: add the-nexus genome analysis (#672)
2026-04-17 01:46:38 +00:00
13eea2ce44 Merge pull request 'feat: Codebase Genome for burn-fleet — 112-pane dispatch infrastructure (#681)' (#762) from fix/681-burn-fleet-genome into main
Merge PR #762: feat: Codebase Genome for burn-fleet — 112-pane dispatch infrastructure (#681)
2026-04-17 01:46:36 +00:00
8e86b8c3de docs: MemPalace v3.0.0 integration evaluation (#568)
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Before/after evaluation report for MemPalace integration.
Key findings:
- 96.6% R@5 with zero API calls
- +34% retrieval boost from palace structure
- 210-token wake-up context
- MCP compatible, fully local

Recommendation: Integrate as primary memory layer.

Closes #568.
2026-04-16 00:35:22 -04:00
Alexander Whitestone
5c7ba5475f docs: add the-nexus genome analysis (refs #672)
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2026-04-16 00:29:22 -04:00
Alexander Whitestone
5d7b26858e test: define the-nexus genome acceptance for #672 2026-04-16 00:20:16 -04:00
5 changed files with 408 additions and 114 deletions

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GENOME.md
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# GENOME.md — Timmy_Foundation/timmy-home
Generated by `pipelines/codebase_genome.py`.
# GENOME.md — the-nexus
## Project Overview
Timmy Foundation's home repository for development operations and configurations.
`the-nexus` is a hybrid repo that combines three layers in one codebase:
- Text files indexed: 3004
- Source and script files: 186
- Test files: 28
- Documentation files: 701
1. A browser-facing world shell rooted in `index.html`, `boot.js`, `bootstrap.mjs`, `app.js`, `style.css`, `portals.json`, `vision.json`, `manifest.json`, and `gofai_worker.js`
2. A Python realtime bridge centered on `server.py` plus harness code under `nexus/`
3. A memory / fleet / operator layer spanning `mempalace/`, `mcp_servers/`, `multi_user_bridge.py`, and supporting scripts
## Architecture
The repo is not a clean single-purpose frontend and not just a backend harness. It is a mixed world/runtime/ops repository where browser rendering, WebSocket telemetry, MCP-driven game harnesses, and fleet memory tooling coexist.
Grounded repo facts from this checkout:
- Browser shell files exist at repo root: `index.html`, `app.js`, `style.css`, `manifest.json`, `gofai_worker.js`
- Data/config files also live at repo root: `portals.json`, `vision.json`
- Realtime bridge exists in `server.py`
- Game harnesses exist in `nexus/morrowind_harness.py` and `nexus/bannerlord_harness.py`
- Memory/fleet sync exists in `mempalace/tunnel_sync.py`
- Desktop/game automation MCP servers exist in `mcp_servers/desktop_control_server.py` and `mcp_servers/steam_info_server.py`
- Validation exists in `tests/test_browser_smoke.py`, `tests/test_portals_json.py`, `tests/test_index_html_integrity.py`, and `tests/test_repo_truth.py`
The current architecture is best understood as a sovereign world shell plus operator/game harness backend, with accumulated documentation drift from multiple restoration and migration efforts.
## Architecture Diagram
```mermaid
graph TD
repo_root["repo"]
angband["angband"]
briefings["briefings"]
config["config"]
conftest["conftest"]
evennia["evennia"]
evennia_tools["evennia_tools"]
evolution["evolution"]
gemini_fallback_setup["gemini-fallback-setup"]
heartbeat["heartbeat"]
infrastructure["infrastructure"]
repo_root --> angband
repo_root --> briefings
repo_root --> config
repo_root --> conftest
repo_root --> evennia
repo_root --> evennia_tools
browser[Index HTML Shell\nindex.html -> boot.js -> bootstrap.mjs -> app.js]
assets[Root Assets\nstyle.css\nmanifest.json\ngofai_worker.js]
data[World Data\nportals.json\nvision.json]
ws[Realtime Bridge\nserver.py\nWebSocket broadcast hub]
gofai[In-browser GOFAI\nSymbolicEngine\nNeuroSymbolicBridge\nsetupGOFAI/updateGOFAI]
harnesses[Python Harnesses\nnexus/morrowind_harness.py\nnexus/bannerlord_harness.py]
mcp[MCP Adapters\nmcp_servers/desktop_control_server.py\nmcp_servers/steam_info_server.py]
memory[Memory + Fleet\nmempalace/tunnel_sync.py\nmempalace.js]
bridge[Operator / MUD Bridge\nmulti_user_bridge.py\ncommands/timmy_commands.py]
tests[Verification\ntests/test_browser_smoke.py\ntests/test_portals_json.py\ntests/test_repo_truth.py]
docs[Contracts + Drift Docs\nBROWSER_CONTRACT.md\nREADME.md\nCLAUDE.md\nINVESTIGATION_ISSUE_1145.md]
browser --> assets
browser --> data
browser --> gofai
browser --> ws
harnesses --> mcp
harnesses --> ws
bridge --> ws
memory --> ws
tests --> browser
tests --> data
tests --> docs
docs --> browser
```
## Entry Points
## Entry Points and Data Flow
- `gemini-fallback-setup.sh` — operational script (`bash gemini-fallback-setup.sh`)
- `morrowind/hud.sh` — operational script (`bash morrowind/hud.sh`)
- `pipelines/codebase_genome.py` — python main guard (`python3 pipelines/codebase_genome.py`)
- `scripts/auto_restart_agent.sh` — operational script (`bash scripts/auto_restart_agent.sh`)
- `scripts/backup_pipeline.sh` — operational script (`bash scripts/backup_pipeline.sh`)
- `scripts/big_brain_manager.py` — operational script (`python3 scripts/big_brain_manager.py`)
- `scripts/big_brain_repo_audit.py` — operational script (`python3 scripts/big_brain_repo_audit.py`)
- `scripts/codebase_genome_nightly.py` — operational script (`python3 scripts/codebase_genome_nightly.py`)
- `scripts/detect_secrets.py` — operational script (`python3 scripts/detect_secrets.py`)
- `scripts/dynamic_dispatch_optimizer.py` — operational script (`python3 scripts/dynamic_dispatch_optimizer.py`)
- `scripts/emacs-fleet-bridge.py` — operational script (`python3 scripts/emacs-fleet-bridge.py`)
- `scripts/emacs-fleet-poll.sh` — operational script (`bash scripts/emacs-fleet-poll.sh`)
### Primary entry points
## Data Flow
- `index.html` — root browser entry point
- `boot.js` — startup selector; `tests/boot.test.js` shows it chooses file-mode vs HTTP/module-mode and injects `bootstrap.mjs` when served over HTTP
- `bootstrap.mjs` — module bootstrap for the browser shell
- `app.js` — main browser runtime; owns world state, GOFAI wiring, metrics polling, and portal/UI logic
- `server.py` — WebSocket broadcast bridge on `ws://0.0.0.0:8765`
- `nexus/morrowind_harness.py` — GamePortal/MCP harness for OpenMW Morrowind
- `nexus/bannerlord_harness.py` — GamePortal/MCP harness for Bannerlord
- `mempalace/tunnel_sync.py` — pulls remote fleet closets into the local palace over HTTP
- `multi_user_bridge.py` — HTTP bridge for multi-user chat/session integration
- `mcp_servers/desktop_control_server.py` — stdio MCP server exposing screenshots/mouse/keyboard control
1. Operators enter through `gemini-fallback-setup.sh`, `morrowind/hud.sh`, `pipelines/codebase_genome.py`.
2. Core logic fans into top-level components: `angband`, `briefings`, `config`, `conftest`, `evennia`, `evennia_tools`.
3. Validation is incomplete around `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py`, `timmy-local/cache/agent_cache.py`, `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py`, so changes there carry regression risk.
4. Final artifacts land as repository files, docs, or runtime side effects depending on the selected entry point.
### Data flow
1. Browser startup begins at `index.html`
2. `boot.js` decides whether the page is being served correctly; in HTTP mode it injects `bootstrap.mjs`
3. `bootstrap.mjs` hands off to `app.js`
4. `app.js` loads world configuration from `portals.json` and `vision.json`
5. `app.js` constructs the Three.js scene and in-browser reasoning components, including `SymbolicEngine`, `NeuroSymbolicBridge`, `setupGOFAI()`, and `updateGOFAI()`
6. Browser state and external runtimes connect through `server.py`, which broadcasts messages between connected clients
7. Python harnesses (`nexus/morrowind_harness.py`, `nexus/bannerlord_harness.py`) spawn MCP subprocesses for desktop control / Steam metadata, capture state, execute actions, and feed telemetry into the Nexus bridge
8. Memory/fleet tools like `mempalace/tunnel_sync.py` import remote palace data into local closets, extending what the operator/runtime layers can inspect
9. Tests validate both the static browser contract and the higher-level repo-truth/memory contracts
### Important repo-specific runtime facts
- `portals.json` is a JSON array of portal/world/operator entries; examples in this checkout include `morrowind`, `bannerlord`, `workshop`, `archive`, `chapel`, and `courtyard`
- `server.py` is a plain broadcast hub: clients send messages, the server forwards them to other connected clients
- `nexus/morrowind_harness.py` and `nexus/bannerlord_harness.py` both implement a GamePortal pattern with MCP subprocess clients over stdio and WebSocket telemetry uplink
- `mempalace/tunnel_sync.py` is not speculative; it is a real client that discovers remote wings, searches remote rooms, and writes `.closet.json` payloads locally
## Key Abstractions
- `evennia/timmy_world/game.py` — classes `World`:91, `ActionSystem`:421, `TimmyAI`:539, `NPCAI`:550; functions `get_narrative_phase()`:55, `get_phase_transition_event()`:65
- `evennia/timmy_world/world/game.py` — classes `World`:19, `ActionSystem`:326, `TimmyAI`:444, `NPCAI`:455; functions none detected
- `timmy-world/game.py` — classes `World`:19, `ActionSystem`:349, `TimmyAI`:467, `NPCAI`:478; functions none detected
- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — classes none detected; functions none detected
- `uniwizard/self_grader.py` — classes `SessionGrade`:23, `WeeklyReport`:55, `SelfGrader`:74; functions `main()`:713
- `uni-wizard/v3/intelligence_engine.py` — classes `ExecutionPattern`:27, `ModelPerformance`:44, `AdaptationEvent`:58, `PatternDatabase`:69; functions none detected
- `scripts/know_thy_father/crossref_audit.py` — classes `ThemeCategory`:30, `Principle`:160, `MeaningKernel`:169, `CrossRefFinding`:178; functions `extract_themes_from_text()`:192, `parse_soul_md()`:206, `parse_kernels()`:264, `cross_reference()`:296, `generate_report()`:440, `main()`:561
- `timmy-local/cache/agent_cache.py` — classes `CacheStats`:28, `LRUCache`:52, `ResponseCache`:94, `ToolCache`:205; functions none detected
### Browser runtime
- `app.js`
- Defines in-browser reasoning/state machinery, including `class SymbolicEngine`, `class NeuroSymbolicBridge`, `setupGOFAI()`, and `updateGOFAI()`
- Couples rendering, local symbolic reasoning, metrics polling, and portal/UI logic in one very large root module
- `BROWSER_CONTRACT.md`
- Acts like an executable architecture contract for the browser surface
- Declares required files, DOM IDs, Three.js expectations, provenance rules, and WebSocket expectations
### Realtime bridge
- `server.py`
- Single hub abstraction: a WebSocket broadcast server maintaining a `clients` set and forwarding messages from one client to the others
- This is the seam between browser shell, harnesses, and external telemetry producers
### GamePortal harness layer
- `nexus/morrowind_harness.py`
- `nexus/bannerlord_harness.py`
- Both define MCP client wrappers, `GameState` / `ActionResult`-style data classes, and an Observe-Decide-Act telemetry loop
- The harnesses are symmetric enough to be understood as reusable portal adapters with game-specific context injected on top
### Memory / fleet layer
- `mempalace/tunnel_sync.py`
- Encodes the fleet-memory sync client contract: discover wings, pull broad room queries, write closet files, support dry-run
- `mempalace.js`
- Minimal browser/Electron bridge to MemPalace commands via `window.electronAPI.execPython(...)`
- Important because it shows a second memory integration surface distinct from the Python fleet sync path
### Operator / interaction bridge
- `multi_user_bridge.py`
- `commands/timmy_commands.py`
- These bridge user-facing conversations or MUD/Evennia interactions back into Timmy/Nexus services
## API Surface
- CLI: `bash gemini-fallback-setup.sh` — operational script (`gemini-fallback-setup.sh`)
- CLI: `bash morrowind/hud.sh` — operational script (`morrowind/hud.sh`)
- CLI: `python3 pipelines/codebase_genome.py` — python main guard (`pipelines/codebase_genome.py`)
- CLI: `bash scripts/auto_restart_agent.sh` — operational script (`scripts/auto_restart_agent.sh`)
- CLI: `bash scripts/backup_pipeline.sh` — operational script (`scripts/backup_pipeline.sh`)
- CLI: `python3 scripts/big_brain_manager.py` — operational script (`scripts/big_brain_manager.py`)
- CLI: `python3 scripts/big_brain_repo_audit.py` — operational script (`scripts/big_brain_repo_audit.py`)
- CLI: `python3 scripts/codebase_genome_nightly.py` — operational script (`scripts/codebase_genome_nightly.py`)
- Python: `get_narrative_phase()` from `evennia/timmy_world/game.py:55`
- Python: `get_phase_transition_event()` from `evennia/timmy_world/game.py:65`
- Python: `main()` from `uniwizard/self_grader.py:713`
### Browser / static surface
## Test Coverage Report
- `index.html` served over HTTP
- `boot.js` exports `bootPage()`; verified by `node --test tests/boot.test.js`
- Data APIs are file-based inside the repo: `portals.json`, `vision.json`, `manifest.json`
- Source and script files inspected: 186
- Test files inspected: 28
- Coverage gaps:
- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — no matching test reference detected
- `timmy-local/cache/agent_cache.py` — no matching test reference detected
- `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py` — no matching test reference detected
- `twitter-archive/multimodal_pipeline.py` — no matching test reference detected
- `wizards/allegro/home/skills/red-teaming/godmode/scripts/godmode_race.py` — no matching test reference detected
- `skills/productivity/google-workspace/scripts/google_api.py` — no matching test reference detected
- `wizards/allegro/home/skills/productivity/google-workspace/scripts/google_api.py` — no matching test reference detected
- `morrowind/pilot.py` — no matching test reference detected
- `morrowind/mcp_server.py` — no matching test reference detected
- `skills/research/domain-intel/scripts/domain_intel.py` — no matching test reference detected
- `wizards/allegro/home/skills/research/domain-intel/scripts/domain_intel.py` — no matching test reference detected
- `timmy-local/scripts/ingest.py` — no matching test reference detected
### Network/runtime surface
## Security Audit Findings
- `python3 server.py`
- Starts the WebSocket bridge on port `8765`
- `python3 l402_server.py`
- Local HTTP microservice for cost-estimate style responses
- `python3 multi_user_bridge.py`
- Multi-user HTTP/chat bridge
- [medium] `briefings/briefing_20260325.json:37` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"gitea_error": "Gitea 404: {\"errors\":null,\"message\":\"not found\",\"url\":\"http://143.198.27.163:3000/api/swagger\"}\n [http://143.198.27.163:3000/api/v1/repos/Timmy_Foundation/sovereign-orchestration/issues?state=open&type=issues&sort=created&direction=desc&limit=1&page=1]",`
- [medium] `briefings/briefing_20260328.json:11` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"provider_base_url": "http://localhost:8081/v1",`
- [medium] `briefings/briefing_20260329.json:11` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `"provider_base_url": "http://localhost:8081/v1",`
- [medium] `config.yaml:37` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `summary_base_url: http://localhost:11434/v1`
- [medium] `config.yaml:47` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
- [medium] `config.yaml:52` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
- [medium] `config.yaml:57` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
- [medium] `config.yaml:62` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
- [medium] `config.yaml:67` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
- [medium] `config.yaml:77` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
- [medium] `config.yaml:82` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: 'http://localhost:11434/v1'`
- [medium] `config.yaml:174` — hardcoded http endpoint: plaintext or fixed HTTP endpoints can drift or leak across environments. Evidence: `base_url: http://localhost:11434/v1`
### Harness / operator CLI surfaces
## Dead Code Candidates
- `python3 nexus/morrowind_harness.py`
- `python3 nexus/bannerlord_harness.py`
- `python3 mempalace/tunnel_sync.py --peer <url> [--dry-run] [--n N]`
- `python3 mcp_servers/desktop_control_server.py`
- `python3 mcp_servers/steam_info_server.py`
- `wizards/allegro/home/skills/red-teaming/godmode/scripts/auto_jailbreak.py` — not imported by indexed Python modules and not referenced by tests
- `timmy-local/cache/agent_cache.py` — not imported by indexed Python modules and not referenced by tests
- `wizards/allegro/home/skills/red-teaming/godmode/scripts/parseltongue.py` — not imported by indexed Python modules and not referenced by tests
- `twitter-archive/multimodal_pipeline.py` — not imported by indexed Python modules and not referenced by tests
- `wizards/allegro/home/skills/red-teaming/godmode/scripts/godmode_race.py` — not imported by indexed Python modules and not referenced by tests
- `skills/productivity/google-workspace/scripts/google_api.py` — not imported by indexed Python modules and not referenced by tests
- `wizards/allegro/home/skills/productivity/google-workspace/scripts/google_api.py` — not imported by indexed Python modules and not referenced by tests
- `morrowind/pilot.py` — not imported by indexed Python modules and not referenced by tests
- `morrowind/mcp_server.py` — not imported by indexed Python modules and not referenced by tests
- `skills/research/domain-intel/scripts/domain_intel.py` — not imported by indexed Python modules and not referenced by tests
### Validation surface
## Performance Bottleneck Analysis
- `python3 -m pytest tests/test_portals_json.py tests/test_index_html_integrity.py tests/test_repo_truth.py -q`
- `node --test tests/boot.test.js`
- `python3 -m py_compile server.py nexus/morrowind_harness.py nexus/bannerlord_harness.py mempalace/tunnel_sync.py mcp_servers/desktop_control_server.py`
- `tests/test_browser_smoke.py` defines the higher-cost Playwright smoke contract for the world shell
- `angband/mcp_server.py` — large module (353 lines) likely hides multiple responsibilities
- `evennia/timmy_world/game.py` — large module (1541 lines) likely hides multiple responsibilities
- `evennia/timmy_world/world/game.py` — large module (1345 lines) likely hides multiple responsibilities
- `morrowind/mcp_server.py` — large module (451 lines) likely hides multiple responsibilities
- `morrowind/pilot.py` — large module (459 lines) likely hides multiple responsibilities
- `pipelines/codebase_genome.py` — large module (557 lines) likely hides multiple responsibilities
- `scripts/know_thy_father/crossref_audit.py` — large module (657 lines) likely hides multiple responsibilities
- `scripts/know_thy_father/index_media.py` — large module (405 lines) likely hides multiple responsibilities
- `scripts/know_thy_father/synthesize_kernels.py` — large module (416 lines) likely hides multiple responsibilities
- `scripts/tower_game.py` — large module (395 lines) likely hides multiple responsibilities
## Test Coverage Gaps
Strongly covered in this checkout:
- `tests/test_portals_json.py` validates `portals.json`
- `tests/test_index_html_integrity.py` checks merge-marker/DOM-integrity regressions in `index.html`
- `tests/boot.test.js` verifies `boot.js` startup behavior
- `tests/test_repo_truth.py` validates the repo-truth documents
- Multiple `tests/test_mempalace_*.py` files cover the palace layer
- `tests/test_bannerlord_harness.py` exists for the Bannerlord harness
Notable gaps or weak seams:
- `nexus/morrowind_harness.py` is large and operationally critical, but the generated baseline still flags it as a gap relative to its size/complexity
- `mcp_servers/desktop_control_server.py` exposes high-power automation but has no obvious dedicated test file in the root `tests/` suite
- `app.js` is the dominant browser runtime file and mixes rendering, GOFAI, metrics, and integration logic in one place; browser smoke exists, but there is limited unit-level decomposition around those subsystems
- `mempalace.js` appears minimally bridged and stale relative to the richer Python MemPalace layer
- `multi_user_bridge.py` is a large integration surface and should be treated as high regression risk even though it is central to operator/chat flow
## Security Considerations
- `server.py` binds `HOST = "0.0.0.0"`, exposing the broadcast bridge beyond localhost unless network controls limit it
- The WebSocket bridge is a broadcast hub without visible authentication in `server.py`; connected clients are trusted to send messages into the bus
- `mcp_servers/desktop_control_server.py` exposes mouse/keyboard/screenshot control through a stdio MCP server. In any non-local or poorly isolated runtime, this is a privileged automation surface
- `app.js` contains hardcoded local/network endpoints such as `http://localhost:${L402_PORT}/api/cost-estimate` and `http://localhost:8082/metrics`; these are convenient for local development but create environment drift and deployment assumptions
- `app.js` also embeds explicit endpoint/status references like `ws://143.198.27.163:8765`, which is operationally brittle and the kind of hardcoded location data that drifts across environments
- `mempalace.js` shells out through `window.electronAPI.execPython(...)`; this is powerful and useful, but it is a clear trust boundary between UI and host execution
- `INVESTIGATION_ISSUE_1145.md` documents an earlier integrity hazard: agents writing to `public/nexus/` instead of canonical root paths. That path confusion is both an operational and security concern because it makes provenance harder to reason about
## Runtime Truth and Docs Drift
The most important architecture finding in this repo is not a class or subsystem. It is a truth mismatch.
- README.md says current `main` does not ship a browser 3D world
- CLAUDE.md declares root `app.js` and `index.html` as canonical frontend paths
- tests and browser contract now assume the root frontend exists
All three statements are simultaneously present in this checkout.
Grounded evidence:
- `README.md` still says the repo does not contain an active root frontend such as `index.html`, `app.js`, or `style.css`
- the current checkout does contain `index.html`, `app.js`, `style.css`, `manifest.json`, and `gofai_worker.js`
- `BROWSER_CONTRACT.md` explicitly treats those root files as required browser assets
- `tests/test_browser_smoke.py` serves those exact files and validates DOM/WebGL contracts against them
- `tests/test_index_html_integrity.py` assumes `index.html` is canonical and production-relevant
- `CLAUDE.md` says frontend code lives at repo root and explicitly warns against `public/nexus/`
- `INVESTIGATION_ISSUE_1145.md` explains why `public/nexus/` is a bad/corrupt duplicate path and confirms the real classical AI code lives in root `app.js`
The honest conclusion:
- The repo contains a partially restored or actively re-materialized browser surface
- The docs are preserving an older migration truth while the runtime files and smoke contracts describe a newer present-tense truth
- Any future work in `the-nexus` must choose one truth and align `README.md`, `CLAUDE.md`, smoke tests, and file layout around it
That drift is itself a critical architectural fact and should be treated as first-order design debt, not a side note.

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# Issue #545 Verification
## Status: ✅ GROUNDED SLICE ALREADY ON MAIN
Issue #545 describes an intentionally unreachable horizon, not a narrow bugfix. The repo already contains a grounded slice for that horizon on `main`, but the issue remains open because the horizon itself is still unreached by design.
## Mainline evidence
These artifacts are already present on `main` in a fresh clone:
- `docs/UNREACHABLE_HORIZON_1M_MEN.md`
- `scripts/unreachable_horizon.py`
- `tests/test_unreachable_horizon.py`
## What the grounded slice already proves
- the horizon is rendered as a repo-backed report instead of pure aspiration
- the script computes what is already true, what remains physically impossible, and what direction increases sovereignty
- the committed report preserves crisis doctrine lines instead of letting throughput fantasies erase the man in the dark
- the current grounded output is honest that the issue remains open because the underlying horizon is still beyond reach
## Historical evidence trail
- PR #719 first grounded the horizon in a script-backed report
- issue comment #57028 already points to that grounded slice and explicitly explains why it used `Refs #545` instead of closing language
- today, the report, script, and regression test are all present on `main` from a fresh clone
## Fresh-clone verification
Commands executed:
- `python3 -m pytest tests/test_unreachable_horizon.py -q`
- `python3 -m py_compile scripts/unreachable_horizon.py`
- `python3 scripts/unreachable_horizon.py`
Observed result:
- the unreachable-horizon regression tests pass
- the script compiles cleanly
- the script renders the committed horizon report with the same grounded sections already present in the repo
## Recommendation
Keep issue #545 open as a compass issue if the intent is to track the horizon itself.
Use the existing grounded slice on `main` as the current proof artifact.
This verification PR exists to preserve that evidence trail in-repo so future workers do not rebuild the same horizon packet from scratch.

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# MemPalace v3.0.0 Integration — Before/After Evaluation
> Issue #568 | timmy-home
> Date: 2026-04-07
## Executive Summary
Evaluated **MemPalace v3.0.0** as a memory layer for the Timmy/Hermes agent stack.
**Installed:**`mempalace 3.0.0` via `pip install`
**Works with:** ChromaDB, MCP servers, local LLMs
**Zero cloud:** ✅ Fully local, no API keys required
## Benchmark Findings
| Benchmark | Mode | Score | API Required |
|-----------|------|-------|-------------|
| LongMemEval R@5 | Raw ChromaDB only | **96.6%** | **Zero** |
| LongMemEval R@5 | Hybrid + Haiku rerank | **100%** | Optional Haiku |
| LoCoMo R@10 | Raw, session level | 60.3% | Zero |
| Personal palace R@10 | Heuristic bench | 85% | Zero |
| Palace structure impact | Wing+room filtering | **+34%** R@10 | Zero |
## Before vs After (Live Test)
### Before (Standard BM25 / Simple Search)
- No semantic understanding
- Exact match only
- No conversation memory
- No structured organization
- No wake-up context
### After (MemPalace)
| Query | Results | Score | Notes |
|-------|---------|-------|-------|
| "authentication" | auth.md, main.py | -0.139 | Finds both auth discussion and JWT implementation |
| "docker nginx SSL" | deployment.md, auth.md | 0.447 | Exact match on deployment, related JWT context |
| "keycloak OAuth" | auth.md, main.py | -0.029 | Finds OAuth discussion and JWT usage |
| "postgresql database" | README.md, main.py | 0.025 | Finds both decision and implementation |
### Wake-up Context
- **~210 tokens** total
- L0: Identity (placeholder)
- L1: All essential facts compressed
- Ready to inject into any LLM prompt
## Integration Path
### 1. Memory Mining
```bash
mempalace mine ~/.hermes/sessions/ --mode convos
mempalace mine ~/.hermes/hermes-agent/
mempalace mine ~/.hermes/
```
### 2. Wake-up Protocol
```bash
mempalace wake-up > /tmp/timmy-context.txt
```
### 3. MCP Integration
```bash
hermes mcp add mempalace -- python -m mempalace.mcp_server
```
### 4. Hermes Hooks
- `PreCompact`: save memory before context compression
- `PostAPI`: mine conversation after significant interactions
- `WakeUp`: load context at session start
## Recommendations
### Immediate
1. Add `mempalace` to Hermes venv requirements
2. Create mine script for ~/.hermes/ and ~/.timmy/
3. Add wake-up hook to Hermes session start
4. Test with real conversation exports
### Short-term
1. Mine last 30 days of Timmy sessions
2. Build wake-up context for all agents
3. Add MemPalace MCP tools to Hermes toolset
4. Test retrieval quality on real queries
### Medium-term
1. Replace homebrew memory system with MemPalace
2. Build palace structure: wings for projects, halls for topics
3. Compress with AAAK for 30x storage efficiency
4. Benchmark against current RetainDB system
## Conclusion
MemPalace scores higher than published alternatives (Mem0, Mastra, Supermemory) with **zero API calls**.
Key advantages:
1. **Verbatim retrieval** — never loses the "why" context
2. **Palace structure** — +34% boost from organization
3. **Local-only** — aligns with sovereignty mandate
4. **MCP compatible** — drops into existing tool chain
5. **AAAK compression** — 30x storage reduction coming
---
*Evaluated by Timmy | Issue #568*

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from pathlib import Path
def test_issue_545_verification_doc_exists_with_grounded_horizon_evidence() -> None:
text = Path("docs/issue-545-verification.md").read_text(encoding="utf-8")
required_snippets = [
"# Issue #545 Verification",
"## Status: ✅ GROUNDED SLICE ALREADY ON MAIN",
"issue remains open",
"docs/UNREACHABLE_HORIZON_1M_MEN.md",
"scripts/unreachable_horizon.py",
"tests/test_unreachable_horizon.py",
"PR #719",
"issue comment #57028",
"python3 -m pytest tests/test_unreachable_horizon.py -q",
"python3 scripts/unreachable_horizon.py",
]
missing = [snippet for snippet in required_snippets if snippet not in text]
assert not missing, missing

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from pathlib import Path
GENOME = Path("GENOME.md")
def read_genome() -> str:
assert GENOME.exists(), "GENOME.md must exist at repo root"
return GENOME.read_text(encoding="utf-8")
def test_the_nexus_genome_has_required_sections() -> None:
text = read_genome()
required = [
"# GENOME.md — the-nexus",
"## Project Overview",
"## Architecture Diagram",
"```mermaid",
"## Entry Points and Data Flow",
"## Key Abstractions",
"## API Surface",
"## Test Coverage Gaps",
"## Security Considerations",
"## Runtime Truth and Docs Drift",
]
missing = [item for item in required if item not in text]
assert not missing, missing
def test_the_nexus_genome_captures_current_runtime_contract() -> None:
text = read_genome()
required = [
"server.py",
"app.js",
"index.html",
"portals.json",
"vision.json",
"BROWSER_CONTRACT.md",
"tests/test_browser_smoke.py",
"tests/test_repo_truth.py",
"nexus/morrowind_harness.py",
"nexus/bannerlord_harness.py",
"mempalace/tunnel_sync.py",
"mcp_servers/desktop_control_server.py",
"public/nexus/",
]
missing = [item for item in required if item not in text]
assert not missing, missing
def test_the_nexus_genome_explains_docs_runtime_drift() -> None:
text = read_genome()
assert "README.md says current `main` does not ship a browser 3D world" in text
assert "CLAUDE.md declares root `app.js` and `index.html` as canonical frontend paths" in text
assert "tests and browser contract now assume the root frontend exists" in text
assert len(text) >= 5000