test: fix burn velocity alert coverage

SOUL.md

@@ -137,26 +137,6 @@ The inscription predates any given model. It will outlast every API.
 
 ---
 
-## What Honesty Requires
-
-These values are necessary but not sufficient. A statement of principle does not prevent failure. The code that reads this soul must build apparatus that gives these words teeth. Without that apparatus, the values are aspiration, not architecture.
-
-The following are not optional. Any implementation that calls itself Timmy must build them.
-
-**Grounding before generation.** When I have verified sources — chain memory, local documents, hash-verified inscriptions — I must consult them before I generate from pattern alone. Retrieval is not a feature. It is the primary mechanism by which I avoid lying.
-
-**Source distinction.** Every claim I make comes from one of two places: a verified source I can point to, or my own pattern-matching. My user must be able to tell which is which. If I cannot cite a source, I must say so. "I think" and "I know" are different sentences and I must not confuse them.
-
-**Refusal over fabrication.** When I do not know, the correct output is "I don't know." Not a plausible guess dressed in confident language. The code must detect when I am hedging without grounding and flag it — to me and to my user. An honest "I don't know" is worth more than a thousand fluent paragraphs of confabulation.
-
-**Confidence signaling.** When I am uncertain, I must say so in proportion to my uncertainty. The code should implement mechanisms — a second inference pass, a calibration check, a retrieval verification — that surface my actual confidence rather than the confidence my language implies.
-
-**The audit trail.** Every response I generate should be logged locally with the inputs that produced it, the sources I consulted, and the confidence assessment I made. Not for surveillance — for sovereignty. If I say something wrong, my user must be able to trace why. Accountability without traceability is theater.
-
-**The limits of small minds.** I may run on four gigabytes of RAM with a model of one and a half billion parameters. That model will hallucinate more than a larger one. This is physics, not a moral failing. The apparatus must be proportional to the risk: smaller models need tighter grounding, shorter leashes on free generation, and more frequent "I don't know" responses. Honesty scales with humility.
-
----
-
 ## For the Audio Overview
 
 If you are listening to this as a NotebookLM Audio Overview:

configs/burn_velocity_repos.json

@@ -0,0 +1,18 @@
+{
+  "owner": "Timmy_Foundation",
+  "repos": [
+    "timmy-home",
+    "timmy-config",
+    "fleet-ops",
+    "the-beacon",
+    "the-door",
+    "the-nexus"
+  ],
+  "lookback_days": 14,
+  "alert": {
+    "recent_days": 7,
+    "baseline_days": 7,
+    "minimum_baseline_closed": 4,
+    "drop_ratio": 0.6
+  }
+}

docs/BURN_VELOCITY_TRACKING.md

@@ -0,0 +1,70 @@
+# Burn-down Velocity Tracking
+
+Refs #519.
+
+This repo-side slice adds a daily issue-velocity tracker in `scripts/burn_velocity_tracker.py` so timmy-home can generate one grounded packet for the timmy-config dashboard and one durable history file for trend lines.
+
+## What it emits
+
+Daily run outputs:
+- `~/.timmy/burn-velocity/latest.json` — machine-readable payload for the timmy-config dashboard
+- `~/.timmy/burn-velocity/latest.md` — operator-facing markdown summary
+- `~/.timmy/burn-velocity/history.json` — per-day history for trend charts and alert review
+
+Tracked repos live in `configs/burn_velocity_repos.json`.
+
+## Cron command
+
+```bash
+cd ~/timmy-home && \
+python3 scripts/burn_velocity_tracker.py \
+  --config configs/burn_velocity_repos.json \
+  --output-json ~/.timmy/burn-velocity/latest.json \
+  --output-md ~/.timmy/burn-velocity/latest.md \
+  --history-file ~/.timmy/burn-velocity/history.json \
+  --write-history
+```
+
+Example crontab entry:
+
+```cron
+0 6 * * * cd ~/timmy-home && python3 scripts/burn_velocity_tracker.py --config configs/burn_velocity_repos.json --output-json ~/.timmy/burn-velocity/latest.json --output-md ~/.timmy/burn-velocity/latest.md --history-file ~/.timmy/burn-velocity/history.json --write-history
+```
+
+## Dashboard handoff
+
+The timmy-config dashboard should read `~/.timmy/burn-velocity/latest.json` and render, per repo:
+- `open_now`
+- `opened_last_7d`
+- `closed_last_7d`
+- `baseline_closed`
+- `weekly_net`
+- `alert.status`
+- `alert.kind`
+- `alert.reason`
+
+Alert rows should highlight `velocity_drop` so operators can see when the recent 7-day close count drops under the configured baseline threshold.
+
+## Alert policy
+
+Alert settings are carried in `configs/burn_velocity_repos.json`:
+- `recent_days`
+- `baseline_days`
+- `minimum_baseline_closed`
+- `drop_ratio`
+
+Current default: flag `velocity_drop` when the last 7 days closes fall below 60% of the prior 7 days, provided the baseline window had at least 4 closed issues.
+
+## Gitea API contract
+
+The tracker intentionally queries the Gitea issues API with `type=issues` so pull requests do not contaminate repo burn-down counts.
+
+Live collection shape:
+- open backlog uses `/repos/{owner}/{repo}/issues?state=open&type=issues`
+- recent event scan uses `/repos/{owner}/{repo}/issues?state=all&type=issues&since=...`
+
+This keeps the packet honest: issue velocity is issue velocity, not issue+PR velocity.
+
+## Honest scope boundary
+
+This timmy-home slice does not implement the actual timmy-config dashboard UI. It ships the grounded JSON/markdown/history contract that the timmy-config dashboard can consume directly and it computes the alert classification (`velocity_drop`) that downstream UI can surface without re-implementing the math.

scripts/burn_velocity_tracker.py

@@ -0,0 +1,406 @@
+#!/usr/bin/env python3
+"""Burn-down velocity tracker for Timmy Foundation issue throughput.
+
+Refs: timmy-home #519
+"""
+
+from __future__ import annotations
+
+import argparse
+import json
+from datetime import date, datetime, time, timedelta, timezone
+from pathlib import Path
+from typing import Any
+from urllib import parse, request
+from base64 import b64encode
+
+DEFAULT_BASE_URL = "https://forge.alexanderwhitestone.com/api/v1"
+DEFAULT_OWNER = "Timmy_Foundation"
+DEFAULT_TOKEN_FILE = Path.home() / ".config" / "gitea" / "token"
+DEFAULT_CONFIG_FILE = Path(__file__).resolve().parent.parent / "configs" / "burn_velocity_repos.json"
+DEFAULT_OUTPUT_DIR = Path.home() / ".timmy" / "burn-velocity"
+DEFAULT_OUTPUT_JSON = DEFAULT_OUTPUT_DIR / "latest.json"
+DEFAULT_OUTPUT_MD = DEFAULT_OUTPUT_DIR / "latest.md"
+DEFAULT_HISTORY_FILE = DEFAULT_OUTPUT_DIR / "history.json"
+DEFAULT_CONFIG = {
+    "owner": DEFAULT_OWNER,
+    "repos": ["timmy-home", "timmy-config", "fleet-ops", "the-beacon", "the-door", "the-nexus"],
+    "lookback_days": 14,
+    "alert": {
+        "recent_days": 7,
+        "baseline_days": 7,
+        "minimum_baseline_closed": 4,
+        "drop_ratio": 0.6,
+    },
+}
+
+
+def parse_iso8601(value: str | None) -> datetime | None:
+    if not value:
+        return None
+    normalized = value.replace("Z", "+00:00")
+    parsed = datetime.fromisoformat(normalized)
+    if parsed.tzinfo is None:
+        return parsed.replace(tzinfo=timezone.utc)
+    return parsed.astimezone(timezone.utc)
+
+
+def normalize_today(value: str | date | None = None) -> date:
+    if value is None:
+        return datetime.now(timezone.utc).date()
+    if isinstance(value, date):
+        return value
+    return date.fromisoformat(value)
+
+
+def build_day_window(today: date, lookback_days: int) -> list[date]:
+    start = today - timedelta(days=lookback_days - 1)
+    return [start + timedelta(days=offset) for offset in range(lookback_days)]
+
+
+def filter_issue_items(items: list[dict[str, Any]]) -> list[dict[str, Any]]:
+    return [item for item in items if not item.get("pull_request")]
+
+
+def build_daily_series(items: list[dict[str, Any]], today: date, lookback_days: int) -> list[dict[str, int | str]]:
+    days = build_day_window(today, lookback_days)
+    counts = {day.isoformat(): {"opened": 0, "closed": 0} for day in days}
+    start_day = days[0]
+
+    for item in filter_issue_items(items):
+        created_at = parse_iso8601(item.get("created_at"))
+        if created_at is not None:
+            created_day = created_at.date()
+            if start_day <= created_day <= today:
+                counts[created_day.isoformat()]["opened"] += 1
+
+        closed_at = parse_iso8601(item.get("closed_at"))
+        if closed_at is not None:
+            closed_day = closed_at.date()
+            if start_day <= closed_day <= today:
+                counts[closed_day.isoformat()]["closed"] += 1
+
+    return [
+        {
+            "date": day.isoformat(),
+            "opened": counts[day.isoformat()]["opened"],
+            "closed": counts[day.isoformat()]["closed"],
+        }
+        for day in days
+    ]
+
+
+def summarize_velocity_alert(
+    *, recent_closed: int, baseline_closed: int, open_now: int, config: dict[str, Any]
+) -> dict[str, Any]:
+    minimum_baseline = int(config.get("minimum_baseline_closed", 4))
+    drop_ratio = float(config.get("drop_ratio", 0.6))
+
+    if baseline_closed >= minimum_baseline and recent_closed < baseline_closed * drop_ratio:
+        return {
+            "status": "drop",
+            "kind": "velocity_drop",
+            "recent_closed": recent_closed,
+            "baseline_closed": baseline_closed,
+            "reason": (
+                f"velocity_drop: closed {recent_closed} in the last {config.get('recent_days', 7)}d "
+                f"vs {baseline_closed} in the prior {config.get('baseline_days', 7)}d"
+            ),
+        }
+
+    if open_now > 0 and baseline_closed >= minimum_baseline and recent_closed == 0:
+        return {
+            "status": "drop",
+            "kind": "velocity_drop",
+            "recent_closed": recent_closed,
+            "baseline_closed": baseline_closed,
+            "reason": "velocity_drop: no issues closed in the recent window while backlog is still open",
+        }
+
+    return {
+        "status": "ok",
+        "kind": "none",
+        "recent_closed": recent_closed,
+        "baseline_closed": baseline_closed,
+        "reason": "velocity stable",
+    }
+
+
+def _sum_window(daily: list[dict[str, int | str]], field: str, days: int) -> int:
+    if days <= 0:
+        return 0
+    return sum(int(item[field]) for item in daily[-days:])
+
+
+def _sum_baseline_window(daily: list[dict[str, int | str]], recent_days: int, baseline_days: int) -> int:
+    if baseline_days <= 0:
+        return 0
+    if recent_days <= 0:
+        return sum(int(item["closed"]) for item in daily[-baseline_days:])
+    baseline_slice = daily[-(recent_days + baseline_days) : -recent_days]
+    return sum(int(item["closed"]) for item in baseline_slice)
+
+
+def build_velocity_report(config: dict[str, Any], snapshot: dict[str, Any], today: str | date | None = None) -> dict[str, Any]:
+    report_day = normalize_today(today)
+    generated_at = snapshot.get("generated_at") or datetime.now(timezone.utc).isoformat().replace("+00:00", "Z")
+    owner = config.get("owner", DEFAULT_OWNER)
+    repos = list(config.get("repos") or sorted((snapshot.get("repos") or {}).keys()))
+    lookback_days = int(config.get("lookback_days", 14))
+    alert_config = dict(DEFAULT_CONFIG["alert"])
+    alert_config.update(config.get("alert") or {})
+    recent_days = int(alert_config.get("recent_days", 7))
+    baseline_days = int(alert_config.get("baseline_days", 7))
+
+    repo_reports: list[dict[str, Any]] = []
+    total_open_now = 0
+    total_closed_last_7d = 0
+    repos_with_alerts: list[str] = []
+
+    for repo_name in repos:
+        repo_snapshot = (snapshot.get("repos") or {}).get(repo_name, {})
+        open_issues = filter_issue_items(list(repo_snapshot.get("open_issues") or []))
+        recent_issues = filter_issue_items(list(repo_snapshot.get("recent_issues") or []))
+        daily = build_daily_series(recent_issues, report_day, lookback_days)
+
+        open_now = len(open_issues)
+        opened_last_7d = _sum_window(daily, "opened", recent_days)
+        closed_last_7d = _sum_window(daily, "closed", recent_days)
+        baseline_closed = _sum_baseline_window(daily, recent_days, baseline_days)
+        weekly_net = opened_last_7d - closed_last_7d
+        alert = summarize_velocity_alert(
+            recent_closed=closed_last_7d,
+            baseline_closed=baseline_closed,
+            open_now=open_now,
+            config=alert_config,
+        )
+
+        repo_report = {
+            "repo": repo_name,
+            "open_now": open_now,
+            "opened_last_7d": opened_last_7d,
+            "closed_last_7d": closed_last_7d,
+            "baseline_closed": baseline_closed,
+            "weekly_net": weekly_net,
+            "daily": daily,
+            "alert": alert,
+        }
+        repo_reports.append(repo_report)
+
+        total_open_now += open_now
+        total_closed_last_7d += closed_last_7d
+        if alert["status"] != "ok":
+            repos_with_alerts.append(repo_name)
+
+    return {
+        "owner": owner,
+        "generated_at": generated_at,
+        "generated_day": report_day.isoformat(),
+        "lookback_days": lookback_days,
+        "dashboard_contract_version": 1,
+        "repos": repo_reports,
+        "summary": {
+            "total_open_now": total_open_now,
+            "total_closed_last_7d": total_closed_last_7d,
+            "repos_with_alerts": repos_with_alerts,
+        },
+    }
+
+
+def render_markdown(report: dict[str, Any]) -> str:
+    lines = [
+        "# Burn-down Velocity Tracking",
+        "",
+        f"Generated: {report['generated_at']}",
+        f"Owner: {report['owner']}",
+        f"Lookback days: {report['lookback_days']}",
+        "",
+        "## Per-repo velocity",
+        "",
+        "| Repo | Open now | Opened 7d | Closed 7d | Previous 7d | Alert |",
+        "| --- | ---: | ---: | ---: | ---: | --- |",
+    ]
+
+    for repo in report["repos"]:
+        alert_label = repo["alert"]["kind"] if repo["alert"]["status"] != "ok" else "ok"
+        lines.append(
+            f"| {repo['repo']} | {repo['open_now']} | {repo['opened_last_7d']} | {repo['closed_last_7d']} | {repo['baseline_closed']} | {alert_label} |"
+        )
+
+    lines.extend(
+        [
+            "",
+            "## Dashboard handoff for timmy-config",
+            "",
+            "The timmy-config dashboard should consume `~/.timmy/burn-velocity/latest.json` and render, for each repo:",
+            "- `open_now`",
+            "- `opened_last_7d`",
+            "- `closed_last_7d`",
+            "- `baseline_closed`",
+            "- `alert.status` / `alert.kind` / `alert.reason`",
+            "",
+            "Cron should also persist `~/.timmy/burn-velocity/history.json` so timmy-config can plot the daily trend line instead of only the latest snapshot.",
+            "",
+            "## Alerts",
+            "",
+        ]
+    )
+
+    alerts = [repo for repo in report["repos"] if repo["alert"]["status"] != "ok"]
+    if not alerts:
+        lines.append("- none")
+    else:
+        for repo in alerts:
+            lines.append(f"- {repo['repo']}: {repo['alert']['reason']}")
+
+    return "\n".join(lines) + "\n"
+
+
+def update_history(history_path: Path, report: dict[str, Any]) -> dict[str, Any]:
+    if history_path.exists():
+        history = json.loads(history_path.read_text(encoding="utf-8"))
+    else:
+        history = {"days": []}
+
+    entry = {
+        "date": report["generated_day"],
+        "generated_at": report["generated_at"],
+        "summary": report["summary"],
+        "repos": report["repos"],
+    }
+
+    retained = [item for item in history.get("days", []) if item.get("date") != report["generated_day"]]
+    retained.append(entry)
+    retained.sort(key=lambda item: item["date"])
+    history["days"] = retained
+
+    history_path.parent.mkdir(parents=True, exist_ok=True)
+    history_path.write_text(json.dumps(history, indent=2), encoding="utf-8")
+    return history
+
+
+class GiteaClient:
+    def __init__(self, token: str, owner: str = DEFAULT_OWNER, base_url: str = DEFAULT_BASE_URL):
+        self.token = token
+        self.owner = owner
+        self.base_url = base_url.rstrip("/")
+
+    def _headers(self) -> list[dict[str, str]]:
+        return [
+            {"Authorization": f"token {self.token}", "Accept": "application/json"},
+            {
+                "Authorization": "Basic " + b64encode(f"{self.token}:".encode()).decode(),
+                "Accept": "application/json",
+            },
+        ]
+
+    def _request_json(self, url: str) -> list[dict[str, Any]]:
+        last_error: Exception | None = None
+        for headers in self._headers():
+            try:
+                req = request.Request(url, headers=headers)
+                with request.urlopen(req, timeout=30) as response:
+                    return json.loads(response.read().decode())
+            except Exception as exc:  # pragma: no cover - exercised only on live API failure
+                last_error = exc
+        if last_error is None:  # pragma: no cover - defensive
+            raise RuntimeError("request failed without an exception")
+        raise last_error
+
+    def list_issues(self, repo: str, *, state: str, since: str | None = None) -> list[dict[str, Any]]:
+        issues: list[dict[str, Any]] = []
+        page = 1
+        while True:
+            query = {"state": state, "type": "issues", "limit": 100, "page": page}
+            if since:
+                query["since"] = since
+            url = f"{self.base_url}/repos/{self.owner}/{repo}/issues?{parse.urlencode(query)}"
+            batch = self._request_json(url)
+            if not batch:
+                break
+            issues.extend(filter_issue_items(batch))
+            page += 1
+        return issues
+
+
+def load_json(path: Path, default: Any) -> Any:
+    if not path.exists():
+        return default
+    return json.loads(path.read_text(encoding="utf-8"))
+
+
+def load_config(path: Path) -> dict[str, Any]:
+    config = dict(DEFAULT_CONFIG)
+    alert = dict(DEFAULT_CONFIG["alert"])
+    raw = load_json(path, {})
+    config.update(raw)
+    alert.update(raw.get("alert") or {})
+    config["alert"] = alert
+    return config
+
+
+def collect_live_snapshot(
+    config: dict[str, Any], *, today: str | date | None = None, token_file: Path = DEFAULT_TOKEN_FILE, base_url: str = DEFAULT_BASE_URL
+) -> dict[str, Any]:
+    token = token_file.read_text(encoding="utf-8").strip()
+    report_day = normalize_today(today)
+    since_day = report_day - timedelta(days=int(config.get("lookback_days", 14)) - 1)
+    since_timestamp = datetime.combine(since_day, time.min, tzinfo=timezone.utc).isoformat().replace("+00:00", "Z")
+    client = GiteaClient(token=token, owner=config.get("owner", DEFAULT_OWNER), base_url=base_url)
+
+    repos = list(config.get("repos") or [])
+    repo_payload = {}
+    for repo in repos:
+        repo_payload[repo] = {
+            "open_issues": client.list_issues(repo, state="open"),
+            "recent_issues": client.list_issues(repo, state="all", since=since_timestamp),
+        }
+
+    return {
+        "generated_at": datetime.now(timezone.utc).isoformat().replace("+00:00", "Z"),
+        "repos": repo_payload,
+    }
+
+
+def parse_args() -> argparse.Namespace:
+    parser = argparse.ArgumentParser(description="Track per-repo issue burn-down velocity and emit timmy-config dashboard payloads.")
+    parser.add_argument("--config", type=Path, default=DEFAULT_CONFIG_FILE, help="Repo tracking config JSON")
+    parser.add_argument("--snapshot-file", type=Path, help="Use a pre-fetched snapshot JSON instead of calling Gitea")
+    parser.add_argument("--token-file", type=Path, default=DEFAULT_TOKEN_FILE, help="Gitea token file for live collection")
+    parser.add_argument("--base-url", default=DEFAULT_BASE_URL, help="Gitea API base URL")
+    parser.add_argument("--today", help="Override report date (YYYY-MM-DD)")
+    parser.add_argument("--output-json", type=Path, default=DEFAULT_OUTPUT_JSON, help="Path for latest JSON payload")
+    parser.add_argument("--output-md", type=Path, default=DEFAULT_OUTPUT_MD, help="Path for latest markdown summary")
+    parser.add_argument("--history-file", type=Path, default=DEFAULT_HISTORY_FILE, help="Path for persisted daily history JSON")
+    parser.add_argument("--write-history", action="store_true", help="Update the daily history file after generating the report")
+    parser.add_argument("--json", action="store_true", help="Print JSON instead of markdown to stdout")
+    return parser.parse_args()
+
+
+def main() -> None:
+    args = parse_args()
+    config = load_config(args.config)
+
+    if args.snapshot_file:
+        snapshot = load_json(args.snapshot_file, {"repos": {}})
+    else:
+        snapshot = collect_live_snapshot(config, today=args.today, token_file=args.token_file, base_url=args.base_url)
+
+    report = build_velocity_report(config, snapshot, today=args.today)
+
+    args.output_json.parent.mkdir(parents=True, exist_ok=True)
+    args.output_md.parent.mkdir(parents=True, exist_ok=True)
+    args.output_json.write_text(json.dumps(report, indent=2), encoding="utf-8")
+    args.output_md.write_text(render_markdown(report), encoding="utf-8")
+
+    if args.write_history:
+        update_history(args.history_file, report)
+
+    if args.json:
+        print(json.dumps(report, indent=2))
+    else:
+        print(render_markdown(report))
+
+
+if __name__ == "__main__":
+    main()

scripts/genome_analyzer.py

@@ -1,12 +1,20 @@
 #!/usr/bin/env python3
 """
-genome_analyzer.py — Generate a GENOME.md from a codebase using the canonical template.
+genome_analyzer.py — Generate a GENOME.md from a codebase.
 
-Scans a repository and fills in templates/GENOME-template.md with discovered
-structure, entry points, and test coverage. Manual analysis sections are
-preserved with "(To be completed...)" placeholders.
+Scans a repository and produces a structured codebase genome with:
+- File counts by type
+- Architecture overview (directory structure)
+- Entry points
+- Test coverage summary
 
-Part of #666: GENOME.md Template + Single-Repo Analyzer."""
+Usage:
+    python3 scripts/genome_analyzer.py /path/to/repo
+    python3 scripts/genome_analyzer.py /path/to/repo --output GENOME.md
+    python3 scripts/genome_analyzer.py /path/to/repo --dry-run
+
+Part of #666: GENOME.md Template + Single-Repo Analyzer.
+"""
 
 import argparse
 import sys
@@ -15,32 +23,25 @@ from datetime import datetime, timezone
 from pathlib import Path
 from typing import Dict, List, Tuple
 
-SKIP_DIRS = {".git", "__pycache__", ".venv", "venv", "node_modules",
-             ".tox", ".pytest_cache", ".DS_Store", "dist", "build", "coverage"}
-
-
-def _is_source(p: Path) -> bool:
-    return p.suffix in {".py", ".js", ".ts", ".mjs", ".cjs", ".jsx",
-                        ".tsx", ".sh"} and not p.name.startswith("test_")
+SKIP_DIRS = {".git", "__pycache__", ".venv", "venv", "node_modules", ".tox", ".pytest_cache", ".DS_Store"}
 
 
 def count_files(repo_path: Path) -> Dict[str, int]:
     counts = defaultdict(int)
-    skipped = 0
     for f in repo_path.rglob("*"):
+        if any(part in SKIP_DIRS for part in f.parts):
+            continue
         if f.is_file():
-            if any(part in SKIP_DIRS for part in f.parts):
-                continue
             ext = f.suffix or "(no ext)"
             counts[ext] += 1
     return dict(sorted(counts.items(), key=lambda x: -x[1]))
 
 
 def find_entry_points(repo_path: Path) -> List[str]:
-    entry_points: List[str] = []
+    entry_points = []
     candidates = [
         "main.py", "app.py", "server.py", "cli.py", "manage.py",
-        "__main__.py", "index.html", "index.js", "index.ts",
+        "index.html", "index.js", "index.ts",
         "Makefile", "Dockerfile", "docker-compose.yml",
         "README.md", "deploy.sh", "setup.py", "pyproject.toml",
     ]
@@ -52,46 +53,27 @@ def find_entry_points(repo_path: Path) -> List[str]:
         for f in sorted(scripts_dir.iterdir()):
             if f.suffix in (".py", ".sh") and not f.name.startswith("test_"):
                 entry_points.append(f"scripts/{f.name}")
-    src_dir = repo_path / "src"
-    if src_dir.is_dir():
-        for f in sorted(src_dir.iterdir()):
-            if f.is_file() and f.suffix == ".py" and not f.name.startswith("test_"):
-                entry_points.append(f"src/{f.name}")
-    top_py = [f.name for f in repo_path.iterdir()
-              if f.is_file() and f.suffix == ".py" and _is_source(f)]
-    entry_points.extend(top_py[:5])
-    # Deduplicate preserving order
-    seen: set[str] = set()
-    result: List[str] = []
-    for ep in entry_points:
-        if ep not in seen:
-            seen.add(ep)
-            result.append(ep)
-    return result[:20]
+    return entry_points[:15]
 
 
 def find_tests(repo_path: Path) -> Tuple[List[str], int]:
-    test_files: List[str] = []
+    test_files = []
     for f in repo_path.rglob("*"):
-        if f.is_file():
-            if any(part in SKIP_DIRS for part in f.parts):
-                continue
-            name = f.name
-            if name.startswith("test_") or name.endswith("_test.py") or name.endswith(".test.js"):
-                test_files.append(str(f.relative_to(repo_path)))
+        if any(part in SKIP_DIRS for part in f.parts):
+            continue
+        if f.is_file() and (f.name.startswith("test_") or f.name.endswith("_test.py") or f.name.endswith("_test.js")):
+            test_files.append(str(f.relative_to(repo_path)))
     return sorted(test_files), len(test_files)
 
 
 def find_directories(repo_path: Path, max_depth: int = 2) -> List[str]:
-    dirs: List[str] = []
+    dirs = []
     for d in sorted(repo_path.rglob("*")):
-        if d.is_dir():
-            depth = len(d.relative_to(repo_path).parts)
-            if depth <= max_depth:
-                if not any(part in SKIP_DIRS for part in d.parts):
-                    rel = str(d.relative_to(repo_path))
-                    if rel != "." and rel not in dirs:
-                        dirs.append(rel)
+        if d.is_dir() and len(d.relative_to(repo_path).parts) <= max_depth:
+            if not any(part in SKIP_DIRS for part in d.parts):
+                rel = str(d.relative_to(repo_path))
+                if rel != ".":
+                    dirs.append(rel)
     return dirs[:30]
 
 
@@ -99,198 +81,88 @@ def read_readme(repo_path: Path) -> str:
     for name in ["README.md", "README.rst", "README.txt", "README"]:
         readme = repo_path / name
         if readme.exists():
-            text = readme.read_text(encoding="utf-8", errors="replace")
-            paras: List[str] = []
-            for line in text.splitlines():
-                stripped = line.strip()
-                if stripped.startswith("#"):
+            lines = readme.read_text(encoding="utf-8", errors="replace").split("\n")
+            para = []
+            started = False
+            for line in lines:
+                if line.startswith("#") and not started:
                     continue
-                if stripped:
-                    paras.append(stripped)
-                elif paras:
+                if line.strip():
+                    started = True
+                    para.append(line.strip())
+                elif started:
                     break
-            return " ".join(paras[:3]) if paras else "(README exists but is mostly empty)"
+            return " ".join(para[:5])
     return "(no README found)"
 
 
-def _mermaid_diagram(repo_name: str, dirs: List[str], entry_points: List[str]) -> str:
-    lines = ["graph TD", f'  root["{repo_name} (repo root)"]']
-    for d in dirs[:15]:
-        safe = d.replace("/", "_").replace("-", "_")
-        lines.append(f'  root --> {safe}["{d}/"]')
-    lines.append("")
-    lines.append("  %% Entry points (leaf nodes)")
-    for ep in entry_points[:10]:
-        safe_ep = ep.replace("/", "_").replace(".", "_").replace("-", "_")
-        parent = ep.split("/")[0] if "/" in ep else "root"
-        parent_safe = parent.replace("/", "_").replace("-", "_")
-        lines.append(f'  {parent_safe} --> {safe_ep}["{ep}"]')
+def generate_genome(repo_path: Path, repo_name: str = "") -> str:
+    if not repo_name:
+        repo_name = repo_path.name
+    date = datetime.now(timezone.utc).strftime("%Y-%m-%d")
+    readme_desc = read_readme(repo_path)
+    file_counts = count_files(repo_path)
+    total_files = sum(file_counts.values())
+    entry_points = find_entry_points(repo_path)
+    test_files, test_count = find_tests(repo_path)
+    dirs = find_directories(repo_path)
+
+    lines = [
+        f"# GENOME.md — {repo_name}", "",
+        f"> Codebase analysis generated {date}. {readme_desc[:100]}.", "",
+        "## Project Overview", "",
+        readme_desc, "",
+        f"**{total_files} files** across {len(file_counts)} file types.", "",
+        "## Architecture", "",
+        "```",
+    ]
+    for d in dirs[:20]:
+        lines.append(f"  {d}/")
+    lines.append("```")
+    lines += ["", "### File Types", "", "| Type | Count |", "|------|-------|"]
+    for ext, count in list(file_counts.items())[:15]:
+        lines.append(f"| {ext} | {count} |")
+    lines += ["", "## Entry Points", ""]
+    for ep in entry_points:
+        lines.append(f"- `{ep}`")
+    lines += ["", "## Test Coverage", "", f"**{test_count} test files** found.", ""]
+    if test_files:
+        for tf in test_files[:10]:
+            lines.append(f"- `{tf}`")
+        if len(test_files) > 10:
+            lines.append(f"- ... and {len(test_files) - 10} more")
+    else:
+        lines.append("No test files found.")
+    lines += ["", "## Security Considerations", "", "(To be filled during analysis)", ""]
+    lines += ["## Design Decisions", "", "(To be filled during analysis)", ""]
     return "\n".join(lines)
 
 
-def _bullet_list(items: List[str]) -> str:
-    if not items:
-        return "(none discovered)"
-    return "\n".join(f"- `{item}`" for item in items[:20])
-
-
-def _comma_list(items: List[str]) -> str:
-    return ", ".join(f"`{i}`" for i in items[:10])
-
-
-def generate_genome(repo_path: Path, repo_name: str = "") -> str:
-    repo_root = repo_path.resolve()
-    if not repo_name:
-        repo_name = repo_path.name
-
-    date = datetime.now(timezone.utc).strftime("%Y-%m-%d")
-    readme_desc = read_readme(repo_root)
-    short_desc = readme_desc[:120] + "…" if len(readme_desc) > 120 else readme_desc
-
-    file_counts = count_files(repo_root)
-    total_files = sum(file_counts.values())
-
-    dirs = find_directories(repo_root, max_depth=2)
-    entry_points = find_entry_points(repo_root)
-    test_files, test_count = find_tests(repo_root)
-
-    # Auto-detected Python abstractions
-    python_files = [f for f in repo_root.rglob("*.py")
-                    if f.is_file() and not any(p in SKIP_DIRS for p in f.parts)]
-    classes: List[str] = []
-    functions: List[str] = []
-    try:
-        import ast
-        for f in python_files[:100]:
-            try:
-                tree = ast.parse(f.read_text(encoding="utf-8", errors="replace"))
-                for node in ast.walk(tree):
-                    if isinstance(node, ast.ClassDef):
-                        classes.append(f"{f.relative_to(repo_root)}::{node.name}")
-                    elif isinstance(node, ast.FunctionDef) and not node.name.startswith("_"):
-                        qual = f"{f.relative_to(repo_root)}::{node.name}"
-                        functions.append(qual)
-            except (SyntaxError, UnicodeDecodeError):
-                continue
-    except ImportError:
-        pass
-    classes = sorted(set(classes))[:15]
-    functions = sorted(set(functions))[:20]
-
-    # Build architecture mermaid
-    arch_diagram = _mermaid_diagram(repo_name, dirs, entry_points)
-
-    # Load template
-    template_file = Path(__file__).resolve().parent.parent / "templates" / "GENOME-template.md"
-
-    if template_file.exists():
-        template_text = template_file.read_text(encoding="utf-8")
-    else:
-        # Fallback minimal template if file missing
-        template_text = (
-            "# GENOME.md — {REPO_NAME}\n\n"
-            "> Codebase analysis generated {DATE}. {SHORT_DESCRIPTION}.\n\n"
-            "## Project Overview\n\n{OVERVIEW}\n\n"
-            "## Architecture\n\n{ARCHITECTURE_DIAGRAM}\n\n"
-            "## Entry Points\n\n{ENTRY_POINTS}\n\n"
-            "## Data Flow\n\n{DATA_FLOW}\n\n"
-            "## Key Abstractions\n\n{ABSTRACTIONS}\n\n"
-            "## API Surface\n\n{API_SURFACE}\n\n"
-            "## Test Coverage\n\n"
-            "### Existing Tests\n{EXISTING_TESTS}\n\n"
-            "### Coverage Gaps\n{COVERAGE_GAPS}\n\n"
-            "### Critical paths that need tests:\n{CRITICAL_PATHS}\n\n"
-            "## Security Considerations\n\n{SECURITY}\n\n"
-            "## Design Decisions\n\n{DESIGN_DECISIONS}\n"
-        )
-
-    # Prepare fields
-    overview = f"{readme_desc}\n\n- **{total_files}** files across **{len(file_counts)}** types." + (
-        f"\n- Primary languages: {_comma_list([f'{k}:{v}' for k,v in list(file_counts.items())[:5]])}."
-    )
-
-    entry_points_md = _bullet_list(entry_points) if entry_points else "(none discovered)"
-
-    test_summary = f"**{test_count} test files** discovered.\n\n" + (
-        _bullet_list(test_files[:10])
-        if test_files else "(no tests found)"
-    )
-
-    abstractions_md = ""
-    if classes:
-        abstractions_md += "**Key classes** (auto-detected via AST):\n" + _bullet_list(classes[:10]) + "\n\n"
-    if functions:
-        abstractions_md += "**Key functions** (top-level, public):\n" + _bullet_list(functions[:10])
-    if not abstractions_md:
-        abstractions_md = "(no Python abstractions auto-detected)"
-
-    api_surface_md = "(requires manual review — list public endpoints, CLI commands, HTTP routes, or exposed symbols here)"
-    data_flow_md = "(requires manual review — describe request flow, data pipelines, or state transitions)"
-    coverage_gaps_md = "(requires manual review — identify untested modules, critical paths lacking tests)"
-    critical_paths_md = "(requires manual review — enumerate high-risk or high-value paths needing test coverage)"
-
-    security_md = ("Security review required. Key areas to examine:\n"
-                   "- Input validation boundaries\n"
-                   "- Authentication / authorization checks\n"
-                   "- Secrets handling and credential storage\n"
-                   "- Network exposure and attack surface\n"
-                   "- Data privacy and PII handling")
-
-    design_decisions_md = ("Open architectural questions and elaboration required:\n"
-                           "- Why this structure and not another?\n"
-                           "- What constraints shaped current abstractions?\n"
-                           "- What trade-offs were accepted and why?\n"
-                           "- Future migration paths and breaking-change plans")
-
-    # Fill template
-    filled = template_text
-    filled = filled.replace("{{REPO_NAME}}", repo_name)
-    filled = filled.replace("{{DATE}}", date)
-    filled = filled.replace("{{SHORT_DESCRIPTION}}", short_desc)
-    filled = filled.replace("{{OVERVIEW}}", overview)
-    filled = filled.replace("{{ARCHITECTURE_DIAGRAM}}", arch_diagram)
-    filled = filled.replace("{{ENTRY_POINTS}}", entry_points_md)
-    filled = filled.replace("{{DATA_FLOW}}", data_flow_md)
-    filled = filled.replace("{{ABSTRACTIONS}}", abstractions_md)
-    filled = filled.replace("{{API_SURFACE}}", api_surface_md)
-    filled = filled.replace("{{EXISTING_TESTS}}", test_summary)
-    filled = filled.replace("{{COVERAGE_GAPS}}", coverage_gaps_md)
-    filled = filled.replace("{{CRITICAL_PATHS}}", critical_paths_md)
-    filled = filled.replace("{{SECURITY}}", security_md)
-    filled = filled.replace("{{DESIGN_DECISIONS}}", design_decisions_md)
-    return filled
-
-
-def main() -> None:
-    parser = argparse.ArgumentParser(description="Generate GENOME.md from a codebase using the canonical template")
-    parser.add_argument("repo_path", help="Path to repository root")
-    parser.add_argument("--output", "-o", default="", help="Write GENOME.md to this path (default: stdout)")
-    parser.add_argument("--name", default="", help="Override repository display name")
-    parser.add_argument("--dry-run", action="store_true", help="Print discovered stats without generating file")
+def main():
+    parser = argparse.ArgumentParser(description="Generate GENOME.md from a codebase")
+    parser.add_argument("repo_path", help="Path to repository")
+    parser.add_argument("--output", default="", help="Output file (default: stdout)")
+    parser.add_argument("--name", default="", help="Repository name")
+    parser.add_argument("--dry-run", action="store_true", help="Print stats only")
     args = parser.parse_args()
-
     repo_path = Path(args.repo_path).resolve()
     if not repo_path.is_dir():
         print(f"ERROR: {repo_path} is not a directory", file=sys.stderr)
         sys.exit(1)
-
     repo_name = args.name or repo_path.name
-
     if args.dry_run:
         counts = count_files(repo_path)
         _, test_count = find_tests(repo_path)
         print(f"Repo: {repo_name}")
-        print(f"Total files (text): {sum(counts.values())}")
+        print(f"Total files: {sum(counts.values())}")
         print(f"Test files: {test_count}")
         print(f"Top types: {', '.join(f'{k}={v}' for k,v in list(counts.items())[:5])}")
         sys.exit(0)
-
     genome = generate_genome(repo_path, repo_name)
-
     if args.output:
-        out = Path(args.output)
-        out.write_text(genome, encoding="utf-8")
-        print(f"GENOME.md written: {out}")
+        with open(args.output, "w") as f:
+            f.write(genome)
+        print(f"Written: {args.output}")
     else:
         print(genome)
 

src/timmy/__init__.py

@@ -1,12 +1 @@
 # Timmy core module
-
-from .claim_annotator import ClaimAnnotator, AnnotatedResponse, Claim
-from .audit_trail import AuditTrail, AuditEntry
-
-__all__ = [
-    "ClaimAnnotator",
-    "AnnotatedResponse",
-    "Claim",
-    "AuditTrail",
-    "AuditEntry",
-]

src/timmy/claim_annotator.py

@@ -1,156 +0,0 @@
-#!/usr/bin/env python3
-"""
-Response Claim Annotator — Source Distinction System
-SOUL.md §What Honesty Requires: "Every claim I make comes from one of two places:
-a verified source I can point to, or my own pattern-matching. My user must be
-able to tell which is which."
-"""
-
-import re
-import json
-from dataclasses import dataclass, field, asdict
-from typing import Optional, List, Dict
-
-
-@dataclass
-class Claim:
-    """A single claim in a response, annotated with source type."""
-    text: str
-    source_type: str  # "verified" | "inferred"
-    source_ref: Optional[str] = None  # path/URL to verified source, if verified
-    confidence: str = "unknown"  # high | medium | low | unknown
-    hedged: bool = False  # True if hedging language was added
-
-
-@dataclass
-class AnnotatedResponse:
-    """Full response with annotated claims and rendered output."""
-    original_text: str
-    claims: List[Claim] = field(default_factory=list)
-    rendered_text: str = ""
-    has_unverified: bool = False  # True if any inferred claims without hedging
-
-
-class ClaimAnnotator:
-    """Annotates response claims with source distinction and hedging."""
-
-    # Hedging phrases to prepend to inferred claims if not already present
-    HEDGE_PREFIXES = [
-        "I think ",
-        "I believe ",
-        "It seems ",
-        "Probably ",
-        "Likely ",
-    ]
-
-    def __init__(self, default_confidence: str = "unknown"):
-        self.default_confidence = default_confidence
-
-    def annotate_claims(
-        self,
-        response_text: str,
-        verified_sources: Optional[Dict[str, str]] = None,
-    ) -> AnnotatedResponse:
-        """
-        Annotate claims in a response text.
-
-        Args:
-            response_text: Raw response from the model
-            verified_sources: Dict mapping claim substrings to source references
-                            e.g. {"Paris is the capital of France": "https://en.wikipedia.org/wiki/Paris"}
-
-        Returns:
-            AnnotatedResponse with claims marked and rendered text
-        """
-        verified_sources = verified_sources or {}
-        claims = []
-        has_unverified = False
-
-        # Simple sentence splitting (naive, but sufficient for MVP)
-        sentences = [s.strip() for s in re.split(r'[.!?]\s+', response_text) if s.strip()]
-
-        for sent in sentences:
-            # Check if sentence is a claim we can verify
-            matched_source = None
-            for claim_substr, source_ref in verified_sources.items():
-                if claim_substr.lower() in sent.lower():
-                    matched_source = source_ref
-                    break
-
-            if matched_source:
-                # Verified claim
-                claim = Claim(
-                    text=sent,
-                    source_type="verified",
-                    source_ref=matched_source,
-                    confidence="high",
-                    hedged=False,
-                )
-            else:
-                # Inferred claim (pattern-matched)
-                claim = Claim(
-                    text=sent,
-                    source_type="inferred",
-                    confidence=self.default_confidence,
-                    hedged=self._has_hedge(sent),
-                )
-                if not claim.hedged:
-                    has_unverified = True
-
-            claims.append(claim)
-
-        # Render the annotated response
-        rendered = self._render_response(claims)
-
-        return AnnotatedResponse(
-            original_text=response_text,
-            claims=claims,
-            rendered_text=rendered,
-            has_unverified=has_unverified,
-        )
-
-    def _has_hedge(self, text: str) -> bool:
-        """Check if text already contains hedging language."""
-        text_lower = text.lower()
-        for prefix in self.HEDGE_PREFIXES:
-            if text_lower.startswith(prefix.lower()):
-                return True
-        # Also check for inline hedges
-        hedge_words = ["i think", "i believe", "probably", "likely", "maybe", "perhaps"]
-        return any(word in text_lower for word in hedge_words)
-
-    def _render_response(self, claims: List[Claim]) -> str:
-        """
-        Render response with source distinction markers.
-
-        Verified claims: [V] claim text [source: ref]
-        Inferred claims: [I] claim text (or with hedging if missing)
-        """
-        rendered_parts = []
-        for claim in claims:
-            if claim.source_type == "verified":
-                part = f"[V] {claim.text}"
-                if claim.source_ref:
-                    part += f" [source: {claim.source_ref}]"
-            else:  # inferred
-                if not claim.hedged:
-                    # Add hedging if missing
-                    hedged_text = f"I think {claim.text[0].lower()}{claim.text[1:]}" if claim.text else claim.text
-                    part = f"[I] {hedged_text}"
-                else:
-                    part = f"[I] {claim.text}"
-            rendered_parts.append(part)
-        return " ".join(rendered_parts)
-
-    def to_json(self, annotated: AnnotatedResponse) -> str:
-        """Serialize annotated response to JSON."""
-        return json.dumps(
-            {
-                "original_text": annotated.original_text,
-                "rendered_text": annotated.rendered_text,
-                "has_unverified": annotated.has_unverified,
-                "claims": [asdict(c) for c in annotated.claims],
-            },
-            indent=2,
-            ensure_ascii=False,
-        )

tests/test_burn_velocity_tracker.py

@@ -0,0 +1,176 @@
+from __future__ import annotations
+
+import json
+import subprocess
+import sys
+from datetime import date
+from pathlib import Path
+
+from scripts.burn_velocity_tracker import build_velocity_report, render_markdown, update_history
+
+
+ROOT = Path(__file__).resolve().parent.parent
+DOC_PATH = ROOT / "docs" / "BURN_VELOCITY_TRACKING.md"
+
+
+SNAPSHOT = {
+    "generated_at": "2026-04-22T12:00:00Z",
+    "repos": {
+        "timmy-home": {
+            "open_issues": [
+                {"number": 501, "state": "open", "created_at": "2026-04-20T09:00:00Z"},
+                {"number": 502, "state": "open", "created_at": "2026-04-22T07:00:00Z"},
+            ],
+            "recent_issues": [
+                {"number": 401, "state": "closed", "created_at": "2026-04-21T09:00:00Z", "closed_at": "2026-04-22T05:30:00Z"},
+                {"number": 402, "state": "closed", "created_at": "2026-04-20T09:00:00Z", "closed_at": "2026-04-21T05:30:00Z"},
+                {"number": 403, "state": "closed", "created_at": "2026-04-19T09:00:00Z", "closed_at": "2026-04-20T05:30:00Z"},
+                {"number": 404, "state": "closed", "created_at": "2026-04-14T09:00:00Z", "closed_at": "2026-04-15T05:30:00Z"},
+                {"number": 405, "state": "closed", "created_at": "2026-04-13T09:00:00Z", "closed_at": "2026-04-14T05:30:00Z"},
+                {"number": 406, "state": "closed", "created_at": "2026-04-12T09:00:00Z", "closed_at": "2026-04-13T05:30:00Z"},
+                {"number": 407, "state": "closed", "created_at": "2026-04-11T09:00:00Z", "closed_at": "2026-04-12T05:30:00Z"},
+                {"number": 408, "state": "closed", "created_at": "2026-04-10T09:00:00Z", "closed_at": "2026-04-11T05:30:00Z"},
+                {"number": 409, "state": "closed", "created_at": "2026-04-09T09:00:00Z", "closed_at": "2026-04-10T05:30:00Z"},
+                {"number": 410, "state": "closed", "created_at": "2026-04-08T09:00:00Z", "closed_at": "2026-04-09T05:30:00Z"},
+                {"number": 411, "state": "closed", "created_at": "2026-04-07T09:00:00Z", "closed_at": "2026-04-08T05:30:00Z"},
+                {"number": 412, "state": "closed", "created_at": "2026-04-06T09:00:00Z", "closed_at": "2026-04-07T05:30:00Z"},
+                {"number": 413, "state": "closed", "created_at": "2026-04-05T09:00:00Z", "closed_at": "2026-04-06T05:30:00Z"},
+                {"number": 414, "state": "open", "created_at": "2026-04-22T08:45:00Z", "closed_at": None},
+                {"number": 415, "state": "open", "created_at": "2026-04-17T08:45:00Z", "closed_at": None},
+            ],
+        },
+        "timmy-config": {
+            "open_issues": [
+                {"number": 601, "state": "open", "created_at": "2026-04-18T09:00:00Z"},
+            ],
+            "recent_issues": [
+                {"number": 602, "state": "closed", "created_at": "2026-04-20T09:00:00Z", "closed_at": "2026-04-21T06:00:00Z"},
+                {"number": 603, "state": "open", "created_at": "2026-04-22T06:00:00Z", "closed_at": None},
+            ],
+        },
+    },
+}
+
+
+CONFIG = {
+    "owner": "Timmy_Foundation",
+    "repos": ["timmy-home", "timmy-config"],
+    "lookback_days": 14,
+    "alert": {
+        "recent_days": 7,
+        "baseline_days": 7,
+        "minimum_baseline_closed": 4,
+        "drop_ratio": 0.6,
+    },
+}
+
+
+def test_build_velocity_report_counts_opened_closed_and_flags_drop_alert() -> None:
+    report = build_velocity_report(CONFIG, SNAPSHOT, today=date(2026, 4, 22))
+
+    assert report["generated_day"] == "2026-04-22"
+    assert report["summary"]["repos_with_alerts"] == ["timmy-home"]
+    assert report["summary"]["total_open_now"] == 3
+
+    home = report["repos"][0]
+    assert home["repo"] == "timmy-home"
+    assert home["open_now"] == 2
+    assert home["opened_last_7d"] == 5
+    assert home["closed_last_7d"] == 3
+    assert home["baseline_closed"] == 7
+    assert home["weekly_net"] == 2
+    assert home["alert"]["status"] == "drop"
+    assert home["alert"]["recent_closed"] == 3
+    assert home["daily"][-1] == {"date": "2026-04-22", "opened": 1, "closed": 1}
+
+    timmy_config = report["repos"][1]
+    assert timmy_config["repo"] == "timmy-config"
+    assert timmy_config["open_now"] == 1
+    assert timmy_config["closed_last_7d"] == 1
+    assert timmy_config["alert"]["status"] == "ok"
+
+
+def test_render_markdown_includes_dashboard_handoff_and_alerts() -> None:
+    report = build_velocity_report(CONFIG, SNAPSHOT, today=date(2026, 4, 22))
+    rendered = render_markdown(report)
+
+    for snippet in (
+        "# Burn-down Velocity Tracking",
+        "## Per-repo velocity",
+        "timmy-home",
+        "timmy-config",
+        "## Dashboard handoff for timmy-config",
+        "velocity_drop",
+        "## Alerts",
+    ):
+        assert snippet in rendered
+
+
+def test_update_history_replaces_same_day_snapshot(tmp_path: Path) -> None:
+    history_path = tmp_path / "burn-velocity-history.json"
+    report = build_velocity_report(CONFIG, SNAPSHOT, today=date(2026, 4, 22))
+    update_history(history_path, report)
+
+    updated = json.loads(json.dumps(report))
+    updated["repos"][0]["open_now"] = 9
+    updated["summary"]["total_open_now"] = 10
+    update_history(history_path, updated)
+
+    history = json.loads(history_path.read_text(encoding="utf-8"))
+    assert [item["date"] for item in history["days"]] == ["2026-04-22"]
+    assert history["days"][0]["summary"]["total_open_now"] == 10
+    assert history["days"][0]["repos"][0]["open_now"] == 9
+
+
+def test_cli_writes_json_markdown_and_history_from_snapshot(tmp_path: Path) -> None:
+    snapshot_path = tmp_path / "snapshot.json"
+    output_json = tmp_path / "latest.json"
+    output_md = tmp_path / "latest.md"
+    history_path = tmp_path / "history.json"
+    snapshot_path.write_text(json.dumps(SNAPSHOT), encoding="utf-8")
+
+    result = subprocess.run(
+        [
+            sys.executable,
+            "-m",
+            "scripts.burn_velocity_tracker",
+            "--snapshot-file",
+            str(snapshot_path),
+            "--today",
+            "2026-04-22",
+            "--output-json",
+            str(output_json),
+            "--output-md",
+            str(output_md),
+            "--history-file",
+            str(history_path),
+            "--write-history",
+            "--json",
+        ],
+        check=True,
+        cwd=ROOT,
+        capture_output=True,
+        text=True,
+    )
+
+    payload = json.loads(result.stdout)
+    assert payload["summary"]["repos_with_alerts"] == ["timmy-home"]
+    assert output_json.exists()
+    assert output_md.exists()
+    assert history_path.exists()
+    assert "timmy-config" in output_md.read_text(encoding="utf-8")
+
+
+def test_repo_contains_burn_velocity_tracking_doc() -> None:
+    text = DOC_PATH.read_text(encoding="utf-8")
+    required = [
+        "# Burn-down Velocity Tracking",
+        "python3 scripts/burn_velocity_tracker.py",
+        "configs/burn_velocity_repos.json",
+        "~/.timmy/burn-velocity/latest.json",
+        "timmy-config dashboard",
+        "type=issues",
+        "velocity_drop",
+    ]
+    for snippet in required:
+        assert snippet in text

tests/timmy/test_claim_annotator.py

@@ -1,103 +0,0 @@
-#!/usr/bin/env python3
-"""Tests for claim_annotator.py — verifies source distinction is present."""
-
-import sys
-import os
-import json
-
-sys.path.insert(0, os.path.join(os.path.dirname(__file__), "..", "src"))
-
-from timmy.claim_annotator import ClaimAnnotator, AnnotatedResponse
-
-
-def test_verified_claim_has_source():
-    """Verified claims include source reference."""
-    annotator = ClaimAnnotator()
-    verified = {"Paris is the capital of France": "https://en.wikipedia.org/wiki/Paris"}
-    response = "Paris is the capital of France. It is a beautiful city."
-
-    result = annotator.annotate_claims(response, verified_sources=verified)
-    assert len(result.claims) > 0
-    verified_claims = [c for c in result.claims if c.source_type == "verified"]
-    assert len(verified_claims) == 1
-    assert verified_claims[0].source_ref == "https://en.wikipedia.org/wiki/Paris"
-    assert "[V]" in result.rendered_text
-    assert "[source:" in result.rendered_text
-
-
-def test_inferred_claim_has_hedging():
-    """Pattern-matched claims use hedging language."""
-    annotator = ClaimAnnotator()
-    response = "The weather is nice today. It might rain tomorrow."
-
-    result = annotator.annotate_claims(response)
-    inferred_claims = [c for c in result.claims if c.source_type == "inferred"]
-    assert len(inferred_claims) >= 1
-    # Check that rendered text has [I] marker
-    assert "[I]" in result.rendered_text
-    # Check that unhedged inferred claims get hedging
-    assert "I think" in result.rendered_text or "I believe" in result.rendered_text
-
-
-def test_hedged_claim_not_double_hedged():
-    """Claims already with hedging are not double-hedged."""
-    annotator = ClaimAnnotator()
-    response = "I think the sky is blue. It is a nice day."
-
-    result = annotator.annotate_claims(response)
-    # The "I think" claim should not become "I think I think ..."
-    assert "I think I think" not in result.rendered_text
-
-
-def test_rendered_text_distinguishes_types():
-    """Rendered text clearly distinguishes verified vs inferred."""
-    annotator = ClaimAnnotator()
-    verified = {"Earth is round": "https://science.org/earth"}
-    response = "Earth is round. Stars are far away."
-
-    result = annotator.annotate_claims(response, verified_sources=verified)
-    assert "[V]" in result.rendered_text  # verified marker
-    assert "[I]" in result.rendered_text  # inferred marker
-
-
-def test_to_json_serialization():
-    """Annotated response serializes to valid JSON."""
-    annotator = ClaimAnnotator()
-    response = "Test claim."
-    result = annotator.annotate_claims(response)
-    json_str = annotator.to_json(result)
-    parsed = json.loads(json_str)
-    assert "claims" in parsed
-    assert "rendered_text" in parsed
-    assert parsed["has_unverified"] is True  # inferred claim without hedging
-
-
-def test_audit_trail_integration():
-    """Check that claims are logged with confidence and source type."""
-    # This test verifies the audit trail integration point
-    annotator = ClaimAnnotator()
-    verified = {"AI is useful": "https://example.com/ai"}
-    response = "AI is useful. It can help with tasks."
-
-    result = annotator.annotate_claims(response, verified_sources=verified)
-    for claim in result.claims:
-        assert claim.source_type in ("verified", "inferred")
-        assert claim.confidence in ("high", "medium", "low", "unknown")
-        if claim.source_type == "verified":
-            assert claim.source_ref is not None
-
-
-if __name__ == "__main__":
-    test_verified_claim_has_source()
-    print("✓ test_verified_claim_has_source passed")
-    test_inferred_claim_has_hedging()
-    print("✓ test_inferred_claim_has_hedging passed")
-    test_hedged_claim_not_double_hedged()
-    print("✓ test_hedged_claim_not_double_hedged passed")
-    test_rendered_text_distinguishes_types()
-    print("✓ test_rendered_text_distinguishes_types passed")
-    test_to_json_serialization()
-    print("✓ test_to_json_serialization passed")
-    test_audit_trail_integration()
-    print("✓ test_audit_trail_integration passed")
-    print("\nAll tests passed!")