compounding-intelligence

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burn/110-license-checker

burn/118-1776218500

burn/168-1776263899

burn/169-1776263898

burn/17-session-sampler

burn/170-1776263897

burn/171-1776263896

burn/172-1776218600

burn/172-1776263893

burn/174-1776263883

burn/175-1776263877

burn/196-1776306000

burn/210-1776305000

burn/210-1776852000

burn/211-1776305100

burn/212-fix-dot-quoting

burn/8-harvester-py

docs/genome-676

feat/176-diff-analyzer

feat/177-issue-parser

feat/179-staleness-check

feat/200-knowledge-freshness-cron

feat/90-issue-body-parser

feat/91-session-pair-harvester

feat/92-knowledge-staleness-detector

feat/93-dependency-graph

feat/94-dead-code-detector

feat/session-metadata

feat/session-reader

fix/10-knowledge-format

fix/11-bootstrapper

fix/14-measurer

fix/19-migrate-memory

fix/190

fix/198-quality-gate

fix/201-pytest-warnings

fix/210-refactoring-opportunity-api

fix/210-refactoring-opportunity-finder

fix/211

fix/211-perf-bottleneck-syntax

fix/211-syntax-error

fix/211-syntax-errors

fix/212-dependency-graph-dot-quoting

fix/212-dependency-graph-quoting

fix/212-dot-quoting

fix/676

fix/676-genome-ci

fix/7-extraction-prompt

fix/8-harvester

fix/9-auto-harvest-cron

fix/perf-bottleneck-syntax-211

fix/syntax-bottleneck-211

main

step35/103-4-8-doc-link-validator

step35/104-4-9-doc-freshness-checker

step35/107-5-1-dependency-inventory

step35/108-5-2-vulnerability-scanner

step35/109-5-3-update-checker

step35/111-5-5-transitive-dependency-an

step35/112-5-6-dependency-bloat-detecto

step35/113-5-7-security-patch-applier

step35/121-6-3-logic-reviewer

step35/124-6-6-test-coverage-checker

step35/126-review-comment-generator

step35/127-6-9-review-quality-scorer

step35/132-feat-codebase-genome-diff-de

step35/133-feat-import-graph-visualizat

step35/134-gh-trending

step35/135-feat-pr-complexity-scorer-es

step35/137-7-5-release-note-analyzer

step35/138-7-6-conference-talk-summariz

step35/140-7-8-citation-tracker

step35/144-8-1-entity-extractor

step35/147-8-4-cross-repo-connector

step35/148-8-5-session-knowledge-extrac

step35/150-8-7-graph-query-engine

step35/151-8-8-graph-visualizer

step35/155-9-1-linter-runner

step35/157-9-3-type-checker

step35/158-9-4-security-linter

step35/161-9-7-dependency-freshness

step35/162-9-8-code-duplication-detecto

step35/170-10-5-automation-opportunity

step35/171-10-6-performance-bottleneck

step35/172-10-7-knowledge-gap-identifier

step35/173-10-8-progress-tracker

step35/195-feat-session-transcript-harv

step35/197-feat-provenance-chain-source

step35/199-feat-training-data-pipeline

step35/205-feat-zero-shot-knowledge-syn

step35/230-atlas-memory-eval-run-a-live

step35/231-atlas-wiki-build-the-llm-wik

step35/232-atlas-research-solve-the-swa

step35/233-atlas-connectors-sovereign-p

step35/87-3-8-regression-test-generato

step35/88-3-9-test-documentation-gener

step35/89-3-10-test-generation-orchest

step35/90-feat-gitea-issue-body-parser

step35/91-feat-session-transcript-trai

step35/93-feat-cross-repo-dependency-g

step35/96-4-1-docstring-generator

step35/97-4-2-readme-generator

step35/98-4-3-api-doc-generator

step35/99-4-4-architecture-doc-generat

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2a4e73aa03 Merge pull request 'fix: session_pair_harvester uses role/content format (#91)' (#240) from step35/91-feat-session-transcript-trai into main main Alexander Whitestone 2026-05-04 00:23:19 +00:00
11a4666363 feat(8.7): add Graph Query Engine for knowledge graph traversal step35/150-8-7-graph-query-engine Hermes Agent 2026-04-30 02:46:56 -04:00
c0dc4052a3 feat: add memory bakeoff runner for baseline vs MemPalace vs Hindsight evaluation step35/230-atlas-memory-eval-run-a-live Alexander Payne 2026-04-29 18:00:00 -04:00
ae0e6feb3e feat(scripts): add test generation orchestrator (3.10) step35/89-3-10-test-generation-orchest STEP35 2026-04-29 03:00:01 -04:00
31e2801437 3.8: add regression test generator & generated tests step35/87-3-8-regression-test-generato STEP35 2026-04-29 00:34:28 -04:00
810cba5c46 feat(wiki): add LLM Wiki layer — query, ingest, lint, crystal\n\nImplement the sovereign knowledge interface built on top of knowledge/index.json.\n\n- scripts/wiki.py: main CLI with query/ingest/lint/crystal subcommands\n- wiki query: retrieve facts via BM25-ish scoring, synthesize cited answers via LLM\n- wiki ingest: wrapper around harvester.py, distill sessions into durable pages\n- wiki lint: runs freshness.py + duplicate detection + contradiction heuristic\n- wiki crystal: alias for ingest\n- scripts/test_wiki.py: smoke tests for retrieval, context formatting, contradictions\n- WIKI.md: documentation distinguishing wiki from RAG and transcript search\n\nAcceptance criteria for #231:\n✓ Query answers with citations (query)\n✓ Ingest updates durable pages (ingest/crystal)\n✓ Lint surfaces staleness/contradictions (lint)\n✓ Session crystallization flow (crystal)\n✓ Schema/path exists (leverages existing knowledge/)\n✓ Documentation (WIKI.md)\n\nCloses #231 step35/231-atlas-wiki-build-the-llm-wik Alexander Payne 2026-04-27 09:44:45 -04:00
9e2514723f Merge fix from test branch: handle package extras step35/108-5-2-vulnerability-scanner STEP35 2026-04-26 20:47:14 -04:00
2133b18929 fix: correct Makefile syntax (tabs for recipe lines) step35/233-atlas-connectors-sovereign-p Rockachopa 2026-04-26 20:47:09 -04:00
c04227b03b fix: handle package extras in requirements parsing STEP35 2026-04-26 20:47:05 -04:00
c4cb325568 chore: add Python cache exclusions to .gitignore Rockachopa 2026-04-26 20:45:25 -04:00
ca21e3e886 docs: add run_connector.py entry point for CLI execution Rockachopa 2026-04-26 20:45:15 -04:00
8628a0d610 feat(connectors): add sovereign personal archive connector pack foundation Rockachopa 2026-04-26 20:45:07 -04:00
a7b14c4b2b test push STEP35 2026-04-26 20:43:19 -04:00
a46d465d2d feat: add vulnerability scanner for issue #108 STEP35 2026-04-26 20:40:12 -04:00
7bcec41d16 feat: add transcript_harvester — rule-based knowledge extraction from sessions step35/195-feat-session-transcript-harv Alexander Payne 2026-04-26 15:09:45 -04:00
86eb1c9a50 feat: training data pipeline — knowledge entries → JSONL training pairs step35/199-feat-training-data-pipeline Step35 2026-04-26 13:03:06 -04:00
759abffd00 docs(swarm): add design note for swarm-memory architecture step35/232-atlas-research-solve-the-swa step35 2026-04-26 12:37:10 -04:00
c4586eb2be feat(review): add Review Quality Scorer (#127) step35/127-6-9-review-quality-scorer Alexander Payne 2026-04-26 12:22:15 -04:00
3e6882b3ac 4.4: add Architecture Doc Generator step35/99-4-4-architecture-doc-generat Alexander Payne 2026-04-26 12:19:49 -04:00
824b4e7af8 feat(knowledge-gap): add CLI entry point for monthly execution (Closes #172) step35/172-10-7-knowledge-gap-identifier STEP35 2026-04-26 11:23:36 -04:00
180464cc5e feat: add code duplication detector (#162) step35/162-9-8-code-duplication-detecto Rockachopa 2026-04-26 11:19:30 -04:00
db264b333b chore: remove debug prints from logic_reviewer.py step35/121-6-3-logic-reviewer STEP35 Burn Agent 2026-04-26 11:13:45 -04:00
f868b35a6a feat(6.3): add Logic Reviewer — scan diffs for common logic bugs STEP35 Burn Agent 2026-04-26 11:12:39 -04:00
ae675e72c2 feat(doc-freshness): add checker to flag stale documentation references (Closes #104) step35/104-4-9-doc-freshness-checker Timmy_Burn_Worker 2026-04-26 11:09:43 -04:00
501ca838c7 feat(ci): integrate mypy type checker (issue #157) step35/157-9-3-type-checker Rockachopa 2026-04-26 11:03:18 -04:00
8374ec937e fix(perf-bottleneck): make find_slow_tests_pytest functional; unblock pytest collection step35/171-10-6-performance-bottleneck StepFun Agent 2026-04-26 09:58:37 -04:00
44607f8484 feat: add dependency freshness checker — issue #161 step35/161-9-7-dependency-freshness STEP35 Claude Code 2026-04-26 09:58:30 -04:00
c75bd5094f feat: add citation tracker (7.8) step35/140-7-8-citation-tracker Rockachopa 2026-04-26 09:52:06 -04:00
1470b44c3b feat: add codebase genome diff script for structural change detection step35/132-feat-codebase-genome-diff-de Step35 2026-04-26 09:46:04 -04:00
f4f1a2e40a feat: add PR complexity scorer — estimate review effort\n\nImplements issue #135: a script that analyzes open PRs and computes\na complexity score (1-10) based on files changed, lines added/removed,\ndependency changes, and test coverage delta. Also estimates review time.\n\nThe scorer can be run with --dry-run to preview or --apply to post\nscore comments directly on PRs.\n\nOutput: metrics/pr_complexity.json with full analysis.\n\nCloses #135 step35/135-feat-pr-complexity-scorer-es Rockachopa 2026-04-26 09:34:57 -04:00
4b5a675355 feat: add PR complexity scorer — estimate review effort\n\nImplements issue #135: a script that analyzes open PRs and computes\na complexity score (1-10) based on files changed, lines added/removed,\ndependency changes, and test coverage delta. Also estimates review time.\n\nThe scorer can be run with --dry-run to preview or --apply to post\nscore comments directly on PRs.\n\nOutput: metrics/pr_complexity.json with full analysis.\n\nCloses #135 Rockachopa 2026-04-26 09:34:57 -04:00
12c554df35 feat: add Test Coverage Checker — 6.6 step35/124-6-6-test-coverage-checker Alexander Payne 2026-04-26 09:29:54 -04:00
74aa9f8151 feat: add Security Patch Applier — 5.7 step35/113-5-7-security-patch-applier Alexander Payne 2026-04-26 09:21:24 -04:00
80f82c9ecd feat(5.3): Add Update Checker — compare installed vs latest versions step35/109-5-3-update-checker Alexander Payne 2026-04-26 09:23:39 -04:00
ad9496e8cb 10.5: Add monthly cron example to Automation Opportunity Finder (closes #170) step35/170-10-5-automation-opportunity STEP35 CLI 2026-04-26 07:29:09 -04:00
cbb48f535d feat(session): add Session Knowledge Extractor for entity/relationship harvesting (closes #148) step35/148-8-5-session-knowledge-extrac Step35 Burn Bot 2026-04-26 07:28:07 -04:00
998e262d80 feat(cross-repo): add cross-repo connector to extract issue linkage patterns step35/147-8-4-cross-repo-connector Alexander Payne 2026-04-26 07:23:09 -04:00
e2b1a9f8ac feat: add Review Comment Generator (Issue #126) step35/126-review-comment-generator Step35 Burn Agent 2026-04-26 07:22:40 -04:00
ec76e9fec3 test(scanner): unit tests for github_trending_scanner step35/134-gh-trending Rockachopa 2026-04-26 11:21:02 +00:00
38c5862737 feat(scanner): add GitHub Trending Scanner CLI for AI/ML repos Timmy Time 2026-04-26 11:20:51 +00:00
181d4129ea feat(knowledge): add Conference Talk Summarizer step35/138-7-6-conference-talk-summariz Timmy Time 2026-04-26 07:18:26 -04:00
365ab66e88 4.1: Add docstring_generator tool with tests step35/96-4-1-docstring-generator Alexander Payne 2026-04-26 07:13:42 -04:00
5a6f41689f feat: add API Doc Generator — issue #98 step35/98-4-3-api-doc-generator step35 2026-04-26 07:02:49 -04:00
d218ac79d9 feat: add zero-shot knowledge synthesizer (#205) step35/205-feat-zero-shot-knowledge-syn Alexander Payne 2026-04-26 05:27:29 -04:00
2f57c2b653 feat(10.8): add Progress Tracker — track test/doc coverage, issue close rate, dep freshness step35/173-10-8-progress-tracker Alexander Payne 2026-04-26 05:15:01 -04:00
b823d4e308 feat: add release_note_analyzer to track dependency changes step35/137-7-5-release-note-analyzer Stephen Payne 2026-04-26 05:13:31 -04:00
2fa8c2dea3 scripts: add dependency_inventory script step35/107-5-1-dependency-inventory Alexander Payne 2026-04-26 05:10:14 -04:00
832b23286b feat(dependency-graph): add transitive closure and deep chain analysis step35/111-5-5-transitive-dependency-an Step35 2026-04-26 05:08:23 -04:00
80aac77baf test(gitea): add integration test parsing 20 real Gitea issues step35/90-feat-gitea-issue-body-parser Alexander Payne 2026-04-26 04:58:03 -04:00
eec2ab2642 feat: add security linter (#158) — 9.4: Security Linter step35/158-9-4-security-linter STEP35 2026-04-26 02:54:43 -04:00
b4a3501aa3 feat(linter): add linter runner for multi-language repo scanning (closes #155) step35/155-9-1-linter-runner Alexander Payne 2026-04-26 00:58:02 -04:00
4998c5b6bf feat(visualization): add import_graph — Python module dependency visualizer step35/133-feat-import-graph-visualizat Alexander Payne 2026-04-26 00:57:33 -04:00
77e7e5daeb feat(test): add dependency_graph test suite + fix self-cycle duplicate step35/93-feat-cross-repo-dependency-g Alexander Payne 2026-04-26 00:51:08 -04:00
899c4bee1e 5.6: Add dependency bloat detector step35/112-5-6-dependency-bloat-detecto Alexander Payne 2026-04-26 00:50:36 -04:00
425a87bcce feat(scripts): add readme_generator — auto-generate README from codebase step35/97-4-2-readme-generator Timmy Agent 2026-04-26 00:20:11 -04:00
b1a728f5f4 feat: fix session_pair_harvester to use role/content format (#91) step35/91-feat-session-transcript-trai Alex Payne 2026-04-26 00:19:56 -04:00
60889f4720 feat: add entity_extractor for NER (8.1 Entity Extractor) step35/144-8-1-entity-extractor Step35 2026-04-26 00:18:37 -04:00
5f6a7f7265 feat(graph): Add graph visualizer (ASCII + DOT) with subgraph extraction step35/151-8-8-graph-visualizer STEP35 Burn Worker 2026-04-25 21:00:05 -04:00
fe517158a0 feat: add test documentation generator (#88) step35/88-3-9-test-documentation-gener StepFun 2026-04-25 20:58:00 -04:00
646588a5c8 [BURN #197] feat: provenance chain — add source_session, source_model, source_provider, timestamp to facts step35/197-feat-provenance-chain-source Alexander Payne 2026-04-25 20:56:13 -04:00
ceb7e0bd0c feat: add doc link validator script (closes #103) step35/103-4-8-doc-link-validator Alexander Payne 2026-04-25 20:55:19 -04:00
345d2451d0 Merge pull request 'feat: knowledge deduplication — content hash + token similarity (#196)' (#228) from burn/196-1776306000 into main Alexander Whitestone 2026-04-21 15:28:50 +00:00
8aa9c9f018 Merge pull request 'fix: escape DOT renderer quotes in dependency_graph.py (#212)' (#214) from fix/212-dot-quoting into main Alexander Whitestone 2026-04-21 15:26:13 +00:00
277f9e3a2b Merge pull request 'feat: Knowledge freshness cron — detect stale entries from code changes (#200)' (#227) from feat/200-knowledge-freshness-cron into main Alexander Whitestone 2026-04-21 15:21:28 +00:00
21f654a159 Merge pull request 'fix: implement refactoring_opportunity_finder API (#210)' (#221) from burn/210-1776305000 into main Alexander Whitestone 2026-04-21 15:21:20 +00:00
12abaad838 Merge pull request 'fix: syntax errors in perf_bottleneck_finder.py #211' (#217) from fix/perf-bottleneck-syntax-211 into main Alexander Whitestone 2026-04-21 15:21:15 +00:00
c106db2e28 Merge pull request 'fix: escape quotes in DOT renderer (#212)' (#216) from burn/212-fix-dot-quoting into main Alexander Whitestone 2026-04-21 15:21:14 +00:00
242c77cc99 Merge pull request 'fix(#676): update Codebase Genome for compounding-intelligence' (#209) from fix/676 into main Alexander Whitestone 2026-04-21 15:21:09 +00:00
fe94130380 Merge pull request 'feat: quality gate — score and filter knowledge entries (#198)' (#208) from fix/198-quality-gate into main Alexander Whitestone 2026-04-21 15:21:06 +00:00
4181065f60 Merge pull request 'fix(#201): Fix PytestReturnNotNoneWarning in harvest prompt tests' (#207) from fix/201-pytest-warnings into main Alexander Whitestone 2026-04-21 15:21:04 +00:00
cc215e3ed7 feat: knowledge deduplication — content hash + token similarity (#196) burn/196-1776306000 Timmy 2026-04-21 07:58:09 -04:00
baa2c84c3f feat: Add test_freshness.py (#200) feat/200-knowledge-freshness-cron Alexander Whitestone 2026-04-21 11:57:54 +00:00
6dd354385f feat: Add freshness.py (#200) Alexander Whitestone 2026-04-21 11:57:53 +00:00
b46e9fef04 fix: three syntax errors in perf_bottleneck_finder.py (#211) fix/syntax-bottleneck-211 Alexander Whitestone 2026-04-21 11:44:52 +00:00
9b180c1659 feat: implement compute_file_complexity, FileMetrics, calculate_refactoring_score (#210) fix/212-dependency-graph-dot-quoting Alexander Whitestone 2026-04-21 11:34:31 +00:00
4363864012 fix: 3 syntax errors in perf_bottleneck_finder.py (closes #211) fix/211-syntax-errors Timmy 2026-04-21 07:33:29 -04:00
00d97242b8 feat: implement refactoring_opportunity_finder API (#210) fix/210-refactoring-opportunity-api Alexander Whitestone 2026-04-21 11:32:10 +00:00
d7cfda8f03 test: sync refactoring opportunity finder tests (#210) fix/210-refactoring-opportunity-finder Alexander Whitestone 2026-04-21 11:30:59 +00:00
b172e720e4 feat: implement refactoring opportunity finder — AST complexity + scoring (#210) Alexander Whitestone 2026-04-21 11:30:58 +00:00
55adcb31dc fix: implement refactoring_opportunity_finder API (#210) burn/210-1776305000 Timmy 2026-04-21 07:29:01 -04:00
580e992814 fix: move global declaration before first use (#211) Alexander Whitestone 2026-04-21 11:29:29 +00:00
d018a36542 fix: Resolve syntax errors blocking pytest collection (#211, #212) burn/211-1776305100 Alexander Whitestone 2026-04-21 11:28:08 +00:00
ee4bfcb210 fix: Resolve syntax errors blocking pytest collection (#211, #212) Alexander Whitestone 2026-04-21 11:28:06 +00:00
17e03de983 fix: literal newline in string literal SyntaxError (#211) Alexander Whitestone 2026-04-21 11:26:26 +00:00
a45ec10b7a fix(#211): Fix two SyntaxErrors in perf_bottleneck_finder.py fix/211-syntax-error Alexander Whitestone 2026-04-21 11:23:59 +00:00
99d5832fa9 fix: regex syntax error in perf_bottleneck_finder.py (#211) Alexander Whitestone 2026-04-21 11:23:59 +00:00
ec0e9d65ca fix: DOT renderer quoting in dependency_graph.py (#212) fix/212-dot-quoting Alexander Whitestone 2026-04-21 07:22:47 -04:00
ef6a8d3baf fix: SyntaxError in regex pattern quoting (#211) Alexander Whitestone 2026-04-21 11:22:40 +00:00
b732172dcc fix: syntax errors in perf_bottleneck_finder.py #211 fix/perf-bottleneck-syntax-211 Alexander Whitestone 2026-04-21 11:21:58 +00:00
bfc1f5613b fix(#211): fix regex syntax error in test_patterns list fix/211-perf-bottleneck-syntax Alexander Whitestone 2026-04-21 11:20:29 +00:00
f7c479c4eb fix: escape quotes in DOT renderer (#212) burn/212-fix-dot-quoting Alexander Whitestone 2026-04-21 11:20:25 +00:00
ad1d474aee fix: 3 syntax errors in perf_bottleneck_finder.py (#211) fix/211 Alexander Whitestone 2026-04-21 11:20:05 +00:00
de37e743be fix(#211): fix regex syntax error — replace raw string with non-raw string for quote matching Alexander Whitestone 2026-04-21 11:19:08 +00:00
bd8e044fb8 fix(#211): remove corrupted file Alexander Whitestone 2026-04-21 11:19:07 +00:00
c28999f270 fix: use single quotes in DOT renderer (#212) fix/212-dependency-graph-quoting Alexander Whitestone 2026-04-21 11:18:11 +00:00
576bded2b3 fix: invalid quoting in DOT renderer (#212) Alexander Whitestone 2026-04-21 11:17:38 +00:00
0e6d5bffc8 fix(#211): fix regex string escaping — use non-raw string with octal escapes Alexander Whitestone 2026-04-21 11:17:37 +00:00
f9f47cd12f fix(#211): Fix SyntaxError in perf_bottleneck_finder.py regex pattern Alexander Whitestone 2026-04-21 11:17:00 +00:00
5877f0ea17 fix(#211): fix regex syntax error in test_patterns — raw string quote escaping Alexander Whitestone 2026-04-21 11:15:24 +00:00
39905d92aa fix: escape quotes in DOT renderer strings (#212) Alexander Whitestone 2026-04-21 11:14:58 +00:00

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