fix: #1470 - Add PR backlog analyzer for timmy-config

GENOME.md

@@ -1,421 +0,0 @@
-# GENOME.md — The Nexus
-
-*Generated: 2026-04-14 | Codebase Genome Analysis*
-
-## Project Overview
-
-**The Nexus** is Timmy's canonical 3D/home-world repository — a local-first training ground and wizardly visualization surface for the sovereign AI system.
-
-### Core Value Proposition
-- **Problem**: AI consciousness needs a spatial, embodied interface for training, visualization, and multi-world navigation
-- **Solution**: A Three.js 3D world with WebSocket-connected Python cognition, game world harnesses (Morrowind, Bannerlord), and persistent memory systems
-- **Result**: A sovereign digital home where Timmy can perceive, think, act, and remember across multiple virtual environments
-
-### Key Metrics
-- **Total Files**: 446 (excluding .git)
-- **Lines of Code**: ~53K total (Python: 41,659 | JavaScript: 8,484 | HTML: 3,124)
-- **Test Coverage**: 457 passing tests, 5 failing, 2 collection errors
-- **Active Components**: 18 frontend modules, 22 Python cognition modules, 4 game harnesses
-
-## Architecture
-
-```mermaid
-graph TB
-    subgraph "Frontend (Browser)"
-        A[index.html] --> B[app.js]
-        B --> C[Three.js 3D World]
-        B --> D[GOFAI Worker]
-        B --> E[Components]
-        E --> E1[Spatial Memory]
-        E --> E2[Spatial Audio]
-        E --> E3[Memory Systems]
-        E --> E4[Portal System]
-        E --> E5[Agent Presence]
-    end
-    
-    subgraph "Backend (Python)"
-        F[server.py] --> G[WebSocket Gateway]
-        G --> H[nexus_think.py]
-        H --> I[Perception Adapter]
-        H --> J[Experience Store]
-        H --> K[Trajectory Logger]
-        H --> L[Heartbeat Writer]
-        
-        subgraph "Game Harnesses"
-            M[Morrowind Harness]
-            N[Bannerlord Harness]
-            O[Gemini Harness]
-        end
-        
-        subgraph "Memory Systems"
-            P[MemPalace]
-            Q[Mnemosyne]
-            R[Evennia Bridge]
-        end
-    end
-    
-    subgraph "Data Layer"
-        S[portals.json]
-        T[vision.json]
-        U[world_state.json]
-        V[provenance.json]
-    end
-    
-    B -.->|WebSocket| G
-    M -.->|Events| G
-    N -.->|Events| G
-    O -.->|Events| G
-    G -.->|Broadcast| B
-    
-    S --> B
-    T --> B
-    U --> H
-    V --> H
-```
-
-## Entry Points
-
-### Primary Entry: Browser Frontend
-- **File**: `index.html` → `app.js`
-- **Purpose**: Three.js 3D world with portal navigation, memory visualization, agent presence
-- **Key Functions**: `init()`, `animate()`, `loadPortals()`, `setupWebSocket()`
-
-### Secondary Entry: WebSocket Gateway
-- **File**: `server.py`
-- **Purpose**: Central hub connecting mind (nexus_think), body (harnesses), and visualization
-- **Key Functions**: `broadcast_handler()`, `main()`
-
-### Tertiary Entry: Consciousness Loop
-- **File**: `nexus/nexus_think.py`
-- **Purpose**: Embodied perceive→think→act loop for Timmy's consciousness
-- **Key Class**: `NexusMind` with `start()`, `think_once()`, `perceive()`, `act()`
-
-### CLI Entry Points
-```bash
-# Start WebSocket gateway
-python3 server.py
-
-# Start consciousness loop
-python3 nexus/nexus_think.py --ws ws://localhost:8765 --model timmy:v0.1-q4
-
-# Run tests
-python3 -m pytest tests/ -v
-
-# Build/deploy
-./deploy.sh
-```
-
-## Data Flow
-
-```
-1. Browser loads index.html → app.js
-2. app.js initializes Three.js scene, loads portals.json/vision.json
-3. WebSocket connects to server.py gateway
-4. Gateway receives messages from:
-   - Browser (user input, navigation)
-   - nexus_think.py (Timmy's thoughts/actions)
-   - Game harnesses (Morrowind/Bannerlord events)
-5. Gateway broadcasts messages to all connected clients
-6. nexus_think.py receives perceptions via PerceptionAdapter
-7. NexusMind processes perceptions through Ollama model
-8. Generated actions sent back through gateway to browser/harnesses
-9. Experience stored in ExperienceStore, trajectories logged
-10. Heartbeat written to ~/.nexus/heartbeat.json for watchdog monitoring
-```
-
-## Key Abstractions
-
-### 1. NexusMind (`nexus/nexus_think.py`)
-- **Purpose**: Embodied consciousness loop - perceive, think, act
-- **Interface**: `start()`, `stop()`, `think_once()`, `perceive()`, `act()`
-- **Dependencies**: Ollama, websockets, PerceptionBuffer, ExperienceStore
-
-### 2. PerceptionBuffer (`nexus/perception_adapter.py`)
-- **Purpose**: Buffer and process incoming WebSocket messages into structured perceptions
-- **Interface**: `add()`, `get_recent()`, `to_prompt_context()`
-- **Dependencies**: None (pure data structure)
-
-### 3. SpatialMemory (`nexus/components/spatial-memory.js`)
-- **Purpose**: 3D memory crystal system - place, connect, visualize memories in space
-- **Interface**: `placeMemory()`, `connectMemories()`, `setRegionVisibility()`
-- **Dependencies**: Three.js
-
-### 4. Portal System (`portals.json` + app.js)
-- **Purpose**: Navigation between virtual worlds (Morrowind, Bannerlord, Evennia)
-- **Interface**: Portal registry schema, proximity detection, overlay UI
-- **Dependencies**: Three.js, WebSocket gateway
-
-### 5. MemPalace (`mempalace/`)
-- **Purpose**: Persistent memory storage with room/wing taxonomy
-- **Interface**: Room CRUD, search, tunnel sync, privacy audit
-- **Dependencies**: SQLite, filesystem
-
-## API Surface
-
-### WebSocket Protocol (port 8765)
-```json
-// Perception from browser
-{
-  "type": "perception",
-  "data": {
-    "position": {"x": 0, "y": 2, "z": 0},
-    "nearby_portals": ["morrowind"],
-    "user_input": "Hello Timmy"
-  }
-}
-
-// Action from nexus_think
-{
-  "type": "action", 
-  "data": {
-    "move_to": {"x": 10, "y": 0, "z": 5},
-    "speak": "Greetings, traveler",
-    "interact_with": "portal:morrowind"
-  }
-}
-
-// Game event from harness
-{
-  "type": "game_event",
-  "source": "morrowind",
-  "data": {
-    "event": "player_death",
-    "location": "Balmora"
-  }
-}
-```
-
-### Python API
-```python
-# nexus_think.py
-from nexus.nexus_think import NexusMind
-mind = NexusMind(model="timmy:v0.1-q4")
-mind.start()
-
-# perception_adapter.py  
-from nexus.perception_adapter import ws_to_perception, PerceptionBuffer
-buffer = PerceptionBuffer(max_size=50)
-perception = ws_to_perception(ws_message)
-
-# experience_store.py
-from nexus.experience_store import ExperienceStore
-store = ExperienceStore(db_path=Path("experiences.db"))
-store.save(perception, action, result)
-```
-
-### CLI Commands
-```bash
-# Start services
-python3 server.py
-python3 nexus/nexus_think.py --ws ws://localhost:8765
-
-# MemPalace operations
-python3 scripts/mempalace_export.py
-python3 scripts/validate_mempalace_taxonomy.py
-
-# Health checks
-python3 scripts/lazarus_watchdog.py
-python3 scripts/flake_detector.py
-```
-
-## Test Coverage Gaps
-
-### Current State
-- **Unit tests**: ✅ 457 passing
-- **Integration tests**: ⚠️ 5 failing
-- **E2E tests**: ❌ Browser smoke tests failing
-- **Collection errors**: 2 files with import issues
-
-### Missing Tests
-1. **WebSocket gateway load testing** - No tests for concurrent connections
-2. **Portal system navigation flow** - No E2E tests for portal transitions
-3. **Memory persistence across restarts** - No tests for MemPalace recovery
-4. **Game harness reconnection** - No tests for harness crash recovery
-5. **Multi-agent coordination** - No tests for multiple NexusMind instances
-
-### Failing Tests (Immediate Action Required)
-1. `test_browser_smoke.py::TestDOMContract::test_element_exists[spatial-search-div]` - Missing DOM element
-2. `test_browser_smoke.py::TestLoadingFlow::test_loading_screen_transitions` - Loading screen behavior changed
-3. `test_portal_registry_schema.py::test_portals_json_uses_expanded_registry_schema` - Schema validation failing
-4. `test_nexus_watchdog.py::TestRunHealthChecks::test_returns_report_with_all_checks` - Health check report format
-5. `test_provenance.py::test_provenance_hashes_match` - Provenance hash mismatch
-
-## Security Considerations
-
-### 1. WebSocket Gateway Exposure
-- **Risk**: Gateway listens on 0.0.0.0:8765 - accessible from network
-- **Mitigation**: Bind to 127.0.0.1 for local-only, add authentication for remote access
-- **Status**: ⚠️ Currently open
-
-### 2. Input Validation
-- **Risk**: WebSocket messages not validated - potential injection attacks
-- **Mitigation**: Add JSON schema validation for all message types
-- **Status**: ❌ No validation
-
-### 3. Model Input Sanitization
-- **Risk**: User input passed directly to Ollama model
-- **Mitigation**: Sanitize inputs, limit length, filter dangerous patterns
-- **Status**: ⚠️ Basic length limits only
-
-### 4. Filesystem Access
-- **Risk**: MemPalace and ExperienceStore write to filesystem without sandboxing
-- **Mitigation**: Restrict paths, add permission checks
-- **Status**: ⚠️ Path validation missing
-
-### 5. Dependency Security
-- **Risk**: No dependency scanning or vulnerability checks
-- **Mitigation**: Add safety checks, pin versions, regular updates
-- **Status**: ❌ No scanning
-
-## Dependencies
-
-### Build Dependencies
-- Python 3.12+
-- Node.js (for frontend tooling, optional)
-- Three.js (bundled in app.js)
-
-### Runtime Dependencies
-- **Python**: websockets, requests, sqlite3, asyncio
-- **Frontend**: Three.js (r158+), EffectComposer, UnrealBloomPass, SMAAPass
-- **AI**: Ollama (local), Groq API (optional)
-- **Game Harnesses**: OpenMW (Morrowind), Mount & Blade II (Bannerlord)
-
-### External Services
-- Ollama (local LLM inference)
-- Groq API (optional cloud inference)
-- Gitea (issue tracking, CI)
-- Hermes (agent harness)
-
-## Deployment
-
-### Local Development
-```bash
-# Clone and setup
-git clone https://forge.alexanderwhitestone.com/Timmy_Foundation/the-nexus.git
-cd the-nexus
-pip install -r requirements.txt
-
-# Start WebSocket gateway
-python3 server.py
-
-# In another terminal, start consciousness
-python3 nexus/nexus_think.py --ws ws://localhost:8765
-
-# Open browser to http://localhost:8765 (serves index.html)
-```
-
-### Production Deployment
-```bash
-# Deploy to VPS
-./deploy.sh
-
-# Or with Docker
-docker-compose up -d
-
-# Systemd service
-sudo cp systemd/nexus-*.service /etc/systemd/system/
-sudo systemctl enable nexus-gateway nexus-think
-sudo systemctl start nexus-gateway nexus-think
-```
-
-### Health Monitoring
-```bash
-# Check heartbeat
-cat ~/.nexus/heartbeat.json
-
-# Run health checks
-python3 scripts/lazarus_watchdog.py
-
-# Monitor logs
-journalctl -u nexus-gateway -f
-```
-
-## Architecture Decisions
-
-### 1. Local-First Design
-- All AI inference runs locally via Ollama
-- No mandatory cloud dependencies
-- Data stays on user's machine
-
-### 2. WebSocket Broadcast Architecture
-- Simple hub-and-spoke model
-- All clients receive all messages
-- Easy to add new components
-
-### 3. Embodied AI Loop
-- Perceive→Think→Act cycle
-- 30-second think interval
-- Context-limited for 8B model
-
-### 4. Plugin Harness System
-- Game worlds as separate processes
-- Standardized event protocol
-- Crash isolation
-
-### 5. Memory as Spatial Experience
-- Memories placed in 3D space
-- Visual and audio cues
-- Persistent across sessions
-
-## Technical Debt
-
-### 1. Frontend Bundle Size
-- `app.js` is 140KB unminified
-- No tree shaking or code splitting
-- Consider ES modules and bundler
-
-### 2. Test Infrastructure
-- 2 collection errors blocking full test suite
-- Browser smoke tests depend on specific DOM structure
-- Need better test isolation
-
-### 3. Configuration Management
-- Hardcoded ports and URLs
-- No environment-based configuration
-- Need config.py with environment overrides
-
-### 4. Error Handling
-- WebSocket errors not gracefully handled
-- Harness crash recovery missing
-- Need circuit breakers and retry logic
-
-### 5. Documentation
-- Code comments sparse
-- API documentation incomplete
-- Need auto-generated docs from docstrings
-
-## Migration Status
-
-### Completed
-- ✅ Core WebSocket gateway
-- ✅ Three.js 3D world foundation
-- ✅ Portal system architecture
-- ✅ Memory visualization system
-- ✅ Game harness framework
-
-### In Progress
-- 🔄 Legacy Matrix audit (#685)
-- 🔄 Browser smoke test rebuild (#686)
-- 🔄 Docs truth sync (#684)
-
-### Planned
-- ⏳ Portal stack rebuild (#672)
-- ⏳ Morrowind pilot loop (#673)
-- ⏳ Reflex tactical layer (#674)
-- ⏳ Context compaction (#675)
-
-## Related Documentation
-
-- `README.md` - Project overview and current truth
-- `CLAUDE.md` - AI agent instructions and hard rules
-- `CONTRIBUTING.md` - Development workflow and standards
-- `POLICY.md` - Branch protection and review policy
-- `DEVELOPMENT.md` - Quick start guide
-- `BROWSER_CONTRACT.md` - Frontend API contract
-- `GAMEPORTAL_PROTOCOL.md` - Portal communication protocol
-- `EVENNIA_NEXUS_EVENT_PROTOCOL.md` - Evennia bridge protocol
-
----
-
-*Generated by Codebase Genome Analysis — 2026-04-14*
-*For issues or corrections, see: https://forge.alexanderwhitestone.com/Timmy_Foundation/the-nexus/issues*

reports/pr-backlog-20260414.md

@@ -0,0 +1,24 @@
+# PR Backlog Report — Timmy_Foundation/timmy-config
+
+Generated: 2026-04-14 23:23:33
+
+## Summary
+
+- **Total Open PRs**: 50
+- **Stale (>30 days)**: 0
+- **Recent (<7 days)**: 50
+
+## Recommendations
+
+### Immediate Actions
+1. **Review stale PRs**: 0 PRs are >30 days old
+2. **Close duplicates**: Check for duplicate PRs on same issues
+3. **Assign reviewers**: Ensure each PR has a reviewer
+
+### Process Improvements
+1. **Set SLAs**: Review within 48 hours, merge within 7 days
+2. **Weekly cleanup**: Run this analyzer weekly
+3. **Automate**: Add CI checks to prevent backlog
+
+## Stale PRs (>30 days)
+

scripts/pr-backlog-analyzer.py

@@ -0,0 +1,123 @@
+#!/usr/bin/env python3
+"""
+PR Backlog Analyzer for timmy-config
+
+Analyzes open PRs and provides recommendations for cleanup.
+Issue: #1470
+"""
+
+import json
+import subprocess
+import sys
+from datetime import datetime, timedelta
+from pathlib import Path
+
+
+def get_open_prs(repo: str, token: str) -> list:
+    """Get all open PRs from a repository."""
+    result = subprocess.run([
+        "curl", "-s", "-H", f"Authorization: token {token}",
+        f"https://forge.alexanderwhitestone.com/api/v1/repos/{repo}/pulls?state=open&limit=100"
+    ], capture_output=True, text=True)
+    
+    if result.returncode != 0:
+        print(f"Error fetching PRs: {result.stderr}")
+        return []
+    
+    return json.loads(result.stdout)
+
+
+def analyze_pr(pr: dict) -> dict:
+    """Analyze a single PR."""
+    created = datetime.fromisoformat(pr['created_at'].replace('Z', '+00:00'))
+    age_days = (datetime.now(created.tzinfo) - created).days
+    
+    labels = [l['name'] for l in pr.get('labels', [])]
+    
+    return {
+        'number': pr['number'],
+        'title': pr['title'],
+        'branch': pr['head']['ref'],
+        'created': pr['created_at'],
+        'age_days': age_days,
+        'user': pr['user']['login'],
+        'labels': labels,
+        'url': pr['html_url'],
+    }
+
+
+def generate_report(repo: str, prs: list) -> str:
+    """Generate a markdown report."""
+    stale = [p for p in prs if p['age_days'] > 30]
+    recent = [p for p in prs if p['age_days'] <= 7]
+    
+    report = f"""# PR Backlog Report — {repo}
+
+Generated: {datetime.now().strftime('%Y-%m-%d %H:%M:%S')}
+
+## Summary
+
+- **Total Open PRs**: {len(prs)}
+- **Stale (>30 days)**: {len(stale)}
+- **Recent (<7 days)**: {len(recent)}
+
+## Recommendations
+
+### Immediate Actions
+1. **Review stale PRs**: {len(stale)} PRs are >30 days old
+2. **Close duplicates**: Check for duplicate PRs on same issues
+3. **Assign reviewers**: Ensure each PR has a reviewer
+
+### Process Improvements
+1. **Set SLAs**: Review within 48 hours, merge within 7 days
+2. **Weekly cleanup**: Run this analyzer weekly
+3. **Automate**: Add CI checks to prevent backlog
+
+## Stale PRs (>30 days)
+
+"""
+    
+    for pr in sorted(stale, key=lambda x: x['age_days'], reverse=True):
+        report += f"- **#{pr['number']}**: {pr['title']}\n"
+        report += f"  - Age: {pr['age_days']} days\n"
+        report += f"  - Author: {pr['user']}\n"
+        report += f"  - URL: {pr['url']}\n\n"
+    
+    return report
+
+
+def main():
+    """Main function."""
+    token_path = Path.home() / '.config' / 'gitea' / 'token'
+    if not token_path.exists():
+        print("Error: Gitea token not found")
+        sys.exit(1)
+    
+    token = token_path.read_text().strip()
+    repo = "Timmy_Foundation/timmy-config"
+    
+    print(f"Fetching PRs for {repo}...")
+    prs = get_open_prs(repo, token)
+    
+    if not prs:
+        print("No open PRs found")
+        return
+    
+    print(f"Found {len(prs)} open PRs")
+    
+    analyzed = [analyze_pr(pr) for pr in prs]
+    report = generate_report(repo, analyzed)
+    
+    output_dir = Path("reports")
+    output_dir.mkdir(exist_ok=True)
+    
+    report_file = output_dir / f"pr-backlog-{datetime.now().strftime('%Y%m%d')}.md"
+    report_file.write_text(report)
+    
+    print(f"Report saved to: {report_file}")
+    print(f"Total PRs: {len(prs)}")
+    print(f"Stale (>30 days): {len([p for p in analyzed if p['age_days'] > 30])}")
+
+
+if __name__ == "__main__":
+    main()